RNA–Protein interactions for RNA: ENST00000540021.5

MSH6-210, Transcript of mutS homolog 6, humanhuman

TSL 2 BASIC

Gene MSH6, Length 3,930 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-210ENST00000540021 TMEM30BQ3MIR4 351 aa10.39□□□□□ -0.75
MSH6-210ENST00000540021 SPATA12Q7Z6I5 190 aa10.39□□□□□ -0.75
MSH6-210ENST00000540021 WIPF2Q8TF74 440 aaPredicted RBP10.39□□□□□ -0.75
MSH6-210ENST00000540021 RABAC1Q9UI14 185 aa10.39□□□□□ -0.75
MSH6-210ENST00000540021 ANKHD1Q8IWZ3 2542 aaKnown RBP10.38□□□□□ -0.75
MSH6-210ENST00000540021 KLF5Q13887 457 aaPredicted RBP10.38□□□□□ -0.75
MSH6-210ENST00000540021 POU2AF1Q16633 256 aa10.38□□□□□ -0.75
MSH6-210ENST00000540021 C8orf49Q96NF6 230 aa10.38□□□□□ -0.75
MSH6-210ENST00000540021 LEPP41159 167 aa10.38□□□□□ -0.75
MSH6-210ENST00000540021 RBX1P62877 108 aa10.38□□□□□ -0.75
MSH6-210ENST00000540021 SPANXN1Q5VSR9 72 aa10.38□□□□□ -0.75
MSH6-210ENST00000540021 FER1L6-AS1Q8NA97 138 aa10.38□□□□□ -0.75
MSH6-210ENST00000540021 TRGV9Q99603 122 aa10.38□□□□□ -0.75
MSH6-210ENST00000540021 SEC11AP67812 179 aa10.38□□□□□ -0.75
MSH6-210ENST00000540021 MYOZ3Q8TDC0 251 aa10.38□□□□□ -0.75
MSH6-210ENST00000540021 HIST1H4GQ99525 98 aa10.38□□□□□ -0.75
MSH6-210ENST00000540021 LOC105371242A0A075B767 164 aa10.37□□□□□ -0.75
MSH6-210ENST00000540021 CDX4O14627 284 aaPredicted RBP10.37□□□□□ -0.75
MSH6-210ENST00000540021 SCGB1D4Q6XE38 83 aa10.37□□□□□ -0.75
MSH6-210ENST00000540021 DEFB125Q8N687 156 aa10.37□□□□□ -0.75
MSH6-210ENST00000540021 RALYQ9UKM9 306 aaKnown RBP10.37□□□□□ -0.75
MSH6-210ENST00000540021 DSCAMO60469 2012 aa10.37□□□□□ -0.75
MSH6-210ENST00000540021 IGHV1-8P0DP01 117 aa10.37□□□□□ -0.75
MSH6-210ENST00000540021 ZNF833PQ6ZTB9 187 aa10.37□□□□□ -0.75
MSH6-210ENST00000540021 GTSCR1Q86UQ5 136 aa10.37□□□□□ -0.75
MSH6-210ENST00000540021 MTURNQ8N3F0 131 aa10.37□□□□□ -0.75
MSH6-210ENST00000540021 TIMD4Q96H15 378 aa10.37□□□□□ -0.75
MSH6-210ENST00000540021 DEFB104AQ8WTQ1 72 aa10.37□□□□□ -0.75
MSH6-210ENST00000540021 CD3EP07766 207 aa10.36□□□□□ -0.75
MSH6-210ENST00000540021 SIGLEC9Q9Y336 463 aa10.36□□□□□ -0.75
MSH6-210ENST00000540021 MFAP4P55083 255 aa10.36□□□□□ -0.75
MSH6-210ENST00000540021 SMAGPQ0VAQ4 97 aa10.36□□□□□ -0.75
MSH6-210ENST00000540021 BCL6BQ8N143 479 aaPredicted RBP10.36□□□□□ -0.75
MSH6-210ENST00000540021 BMI1P35226 326 aa10.36□□□□□ -0.75
MSH6-210ENST00000540021 ANKRD39Q53RE8 183 aa10.36□□□□□ -0.75
MSH6-210ENST00000540021 VWC2LB2RUY7 222 aa10.35□□□□□ -0.75
MSH6-210ENST00000540021 TIMM23O14925 209 aa10.35□□□□□ -0.75
MSH6-210ENST00000540021 COX8AP10176 69 aa10.35□□□□□ -0.75
MSH6-210ENST00000540021 FAM120AOSQ5T036 256 aa10.35□□□□□ -0.75
MSH6-210ENST00000540021 LOC107984156A0A0G2JMH3 177 aa10.35□□□□□ -0.75
MSH6-210ENST00000540021 TMEM178BH3BS89 294 aa10.35□□□□□ -0.75
MSH6-210ENST00000540021 K7EMI3 77 aa10.35□□□□□ -0.75
MSH6-210ENST00000540021 WT1P19544 449 aaPredicted RBP10.35□□□□□ -0.75
MSH6-210ENST00000540021 ARL17AQ8IVW1 177 aa10.35□□□□□ -0.75
MSH6-210ENST00000540021 DSCAML1Q8TD84 2053 aa10.35□□□□□ -0.75
MSH6-210ENST00000540021 LY6HO94772 140 aa10.35□□□□□ -0.75
MSH6-210ENST00000540021 NDUFA3O95167 84 aa10.35□□□□□ -0.75
MSH6-210ENST00000540021 MGPP08493 103 aa10.35□□□□□ -0.75
MSH6-210ENST00000540021 RHOGP84095 191 aa10.35□□□□□ -0.75
MSH6-210ENST00000540021 HSD52Q0P140 79 aa10.35□□□□□ -0.75
MSH6-210ENST00000540021 SRSF9Q13242 221 aaKnown RBP eCLIP10.35□□□□□ -0.75
MSH6-210ENST00000540021 ADIPOQQ15848 244 aa10.35□□□□□ -0.75
MSH6-210ENST00000540021 SAMD5Q5TGI4 173 aa10.35□□□□□ -0.75
MSH6-210ENST00000540021 MBD6Q96DN6 1003 aa10.35□□□□□ -0.75
MSH6-210ENST00000540021 GTSF1LQ9H1H1 148 aa10.35□□□□□ -0.75
MSH6-210ENST00000540021 TLN1Q9Y490 2541 aaKnown RBP10.34□□□□□ -0.75
MSH6-210ENST00000540021 LHBP01229 141 aa10.34□□□□□ -0.75
MSH6-210ENST00000540021 Q5PR19 223 aa10.34□□□□□ -0.75
MSH6-210ENST00000540021 LCNL1Q6ZST4 164 aa10.34□□□□□ -0.75
MSH6-210ENST00000540021 ZNF747Q9BV97 191 aa10.34□□□□□ -0.75
MSH6-210ENST00000540021 TTTY13Q9BZ97 58 aa10.34□□□□□ -0.75
MSH6-210ENST00000540021 SPRY4Q9C004 299 aa10.34□□□□□ -0.75
MSH6-210ENST00000540021 IGHV1-3A0A0C4DH29 117 aa10.34□□□□□ -0.75
MSH6-210ENST00000540021 LTAP01374 205 aa10.34□□□□□ -0.75
MSH6-210ENST00000540021 FAM106CPP0CH98 169 aa10.34□□□□□ -0.75
MSH6-210ENST00000540021 RPL7P18124 248 aaKnown RBP10.34□□□□□ -0.75
MSH6-210ENST00000540021 CEACAM3P40198 252 aa10.34□□□□□ -0.75
MSH6-210ENST00000540021 RBPJQ06330 500 aa10.34□□□□□ -0.75
MSH6-210ENST00000540021 FAM106AQ4KMX7 169 aa10.34□□□□□ -0.75
MSH6-210ENST00000540021 PCP2Q8IVA1 136 aa10.34□□□□□ -0.75
MSH6-210ENST00000540021 ZNF502Q8TBZ5 544 aa10.34□□□□□ -0.75
MSH6-210ENST00000540021 SIGLEC8Q9NYZ4 499 aa10.34□□□□□ -0.75
MSH6-210ENST00000540021 SH2D1AO60880 128 aa10.34□□□□□ -0.75
MSH6-210ENST00000540021 TMEM75Q8N9X5 138 aa10.34□□□□□ -0.75
MSH6-210ENST00000540021 OR1N2Q8NGR9 330 aa10.34□□□□□ -0.75
MSH6-210ENST00000540021 LINC01560Q8TB33 94 aa10.34□□□□□ -0.75
MSH6-210ENST00000540021 DKK4Q9UBT3 224 aa10.34□□□□□ -0.75
MSH6-210ENST00000540021 K7EP13 123 aa10.33□□□□□ -0.76
MSH6-210ENST00000540021 PSG3Q16557 428 aa10.33□□□□□ -0.76
MSH6-210ENST00000540021 ZNF492Q9P255 531 aa10.33□□□□□ -0.76
MSH6-210ENST00000540021 IGKV1D-37A0A075B6S9 117 aa10.33□□□□□ -0.76
MSH6-210ENST00000540021 SMAD7O15105 426 aaKnown RBP10.33□□□□□ -0.76
MSH6-210ENST00000540021 RNASE6Q93091 150 aaKnown RBP10.33□□□□□ -0.76
MSH6-210ENST00000540021 SCRT2Q9NQ03 307 aa10.33□□□□□ -0.76
MSH6-210ENST00000540021 MBD3L4A6NDZ8 208 aaPredicted RBP10.33□□□□□ -0.76
MSH6-210ENST00000540021 MBD3L3A6NE82 208 aaPredicted RBP10.33□□□□□ -0.76
MSH6-210ENST00000540021 MBD3L5A6NJ08 208 aaPredicted RBP10.33□□□□□ -0.76
MSH6-210ENST00000540021 SCGB1C2P0DMR2 95 aa10.33□□□□□ -0.76
MSH6-210ENST00000540021 Q6AWC8 147 aa10.33□□□□□ -0.76
MSH6-210ENST00000540021 MBD3L2Q8NHZ7 208 aaPredicted RBP10.33□□□□□ -0.76
MSH6-210ENST00000540021 K7ERJ3 54 aa10.32□□□□□ -0.76
MSH6-210ENST00000540021 GOSR1O95249 250 aa10.32□□□□□ -0.76
MSH6-210ENST00000540021 CGB3P0DN86 165 aa10.32□□□□□ -0.76
MSH6-210ENST00000540021 CGB7P0DN87 165 aa10.32□□□□□ -0.76
MSH6-210ENST00000540021 LOXL1Q08397 574 aaPredicted RBP10.32□□□□□ -0.76
MSH6-210ENST00000540021 CT83Q5H943 113 aa10.32□□□□□ -0.76
MSH6-210ENST00000540021 GFRA4Q9GZZ7 299 aa10.32□□□□□ -0.76
MSH6-210ENST00000540021 C21orf62Q9NYP8 219 aa10.32□□□□□ -0.76
MSH6-210ENST00000540021 DKK2Q9UBU2 259 aa10.32□□□□□ -0.76
MSH6-210ENST00000540021 SAMD13Q5VXD3 122 aa10.32□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms