RNA–Protein interactions for RNA: ENST00000537004.5

CLIP1-208, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,000 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-208ENST00000537004 ATP6V0E1O15342 81 aa9.24□□□□□ -0.93
CLIP1-208ENST00000537004 PFN1P07737 140 aaKnown RBP9.24□□□□□ -0.93
CLIP1-208ENST00000537004 GP9P14770 177 aa9.24□□□□□ -0.93
CLIP1-208ENST00000537004 LEMD1Q68G75 181 aa9.24□□□□□ -0.93
CLIP1-208ENST00000537004 HIST3H2BBQ8N257 126 aa9.24□□□□□ -0.93
CLIP1-208ENST00000537004 SFRP2Q96HF1 295 aa9.24□□□□□ -0.93
CLIP1-208ENST00000537004 TRAV30A0A087WSZ9 112 aa9.23□□□□□ -0.93
CLIP1-208ENST00000537004 M0QZK8 103 aa9.23□□□□□ -0.93
CLIP1-208ENST00000537004 TGOLN2O43493 480 aa9.23□□□□□ -0.93
CLIP1-208ENST00000537004 HIST1H2BKO60814 126 aa9.23□□□□□ -0.93
CLIP1-208ENST00000537004 OR2J3O76001 311 aa9.23□□□□□ -0.93
CLIP1-208ENST00000537004 NDUFB8O95169 186 aa9.23□□□□□ -0.93
CLIP1-208ENST00000537004 TOMM40O96008 361 aa9.23□□□□□ -0.93
CLIP1-208ENST00000537004 HIST1H2BJP06899 126 aa9.23□□□□□ -0.93
CLIP1-208ENST00000537004 SNRPCP09234 159 aaKnown RBP9.23□□□□□ -0.93
CLIP1-208ENST00000537004 HIST1H2BOP23527 126 aa9.23□□□□□ -0.93
CLIP1-208ENST00000537004 HIST1H2BBP33778 126 aa9.23□□□□□ -0.93
CLIP1-208ENST00000537004 HIST1H2BDP58876 126 aa9.23□□□□□ -0.93
CLIP1-208ENST00000537004 HIST1H2BCP62807 126 aa9.23□□□□□ -0.93
CLIP1-208ENST00000537004 HIST2H2BEQ16778 126 aa9.23□□□□□ -0.93
CLIP1-208ENST00000537004 ECSCRQ19T08 205 aa9.23□□□□□ -0.93
CLIP1-208ENST00000537004 HIST2H2BFQ5QNW6 126 aaPredicted RBP9.23□□□□□ -0.93
CLIP1-208ENST00000537004 UNQ5815/PRO19632Q6UWF5 114 aa9.23□□□□□ -0.93
CLIP1-208ENST00000537004 BLNKQ8WV28 456 aa9.23□□□□□ -0.93
CLIP1-208ENST00000537004 HIST1H2BHQ93079 126 aa9.23□□□□□ -0.93
CLIP1-208ENST00000537004 NEU1Q99519 415 aa9.23□□□□□ -0.93
CLIP1-208ENST00000537004 HIST1H2BNQ99877 126 aa9.23□□□□□ -0.93
CLIP1-208ENST00000537004 HIST1H2BMQ99879 126 aa9.23□□□□□ -0.93
CLIP1-208ENST00000537004 SLC25A39Q9BZJ4 359 aaPredicted RBP9.23□□□□□ -0.93
CLIP1-208ENST00000537004 C21orf62Q9NYP8 219 aa9.23□□□□□ -0.93
CLIP1-208ENST00000537004 MRPL27Q9P0M9 148 aaKnown RBP9.23□□□□□ -0.93
CLIP1-208ENST00000537004 LY96Q9Y6Y9 160 aa9.23□□□□□ -0.93
CLIP1-208ENST00000537004 PRKDCP78527 4128 aaKnown RBP9.22□□□□□ -0.93
CLIP1-208ENST00000537004 F8W735 103 aaPredicted RBP9.22□□□□□ -0.93
CLIP1-208ENST00000537004 K7EN84 100 aa9.22□□□□□ -0.93
CLIP1-208ENST00000537004 GNG4P50150 75 aa9.22□□□□□ -0.93
CLIP1-208ENST00000537004 YPEL3P61236 119 aaPredicted RBP9.22□□□□□ -0.93
CLIP1-208ENST00000537004 Q56UQ5 140 aa9.22□□□□□ -0.93
CLIP1-208ENST00000537004 CENPWQ5EE01 88 aa9.22□□□□□ -0.93
CLIP1-208ENST00000537004 TEX38Q6PEX7 206 aa9.22□□□□□ -0.93
CLIP1-208ENST00000537004 IL4P05112 153 aa9.22□□□□□ -0.93
CLIP1-208ENST00000537004 NBEAP1P0C6P0 100 aa9.22□□□□□ -0.93
CLIP1-208ENST00000537004 RANP62826 216 aaKnown RBP9.22□□□□□ -0.93
CLIP1-208ENST00000537004 ZNF491Q8N8L2 437 aa9.22□□□□□ -0.93
CLIP1-208ENST00000537004 RNF125Q96EQ8 232 aa9.22□□□□□ -0.93
CLIP1-208ENST00000537004 TMEM68Q96MH6 324 aa9.22□□□□□ -0.93
CLIP1-208ENST00000537004 PYGO2Q9BRQ0 406 aa9.22□□□□□ -0.93
CLIP1-208ENST00000537004 FBXL7Q9UJT9 491 aa9.22□□□□□ -0.93
CLIP1-208ENST00000537004 WI2-2373I1.2A0A1W2PRP0 233 aa9.21□□□□□ -0.93
CLIP1-208ENST00000537004 IGHV3-23P01764 117 aa9.21□□□□□ -0.93
CLIP1-208ENST00000537004 MYCNOSP40205 109 aa9.21□□□□□ -0.93
CLIP1-208ENST00000537004 RELQ04864 619 aaPredicted RBP9.21□□□□□ -0.93
CLIP1-208ENST00000537004 GPR61Q9BZJ8 451 aa9.21□□□□□ -0.93
CLIP1-208ENST00000537004 A0A1W2PPQ1 181 aa9.21□□□□□ -0.94
CLIP1-208ENST00000537004 G3V318 75 aa9.21□□□□□ -0.94
CLIP1-208ENST00000537004 PEX7O00628 323 aa9.21□□□□□ -0.94
CLIP1-208ENST00000537004 KCNIP4Q6PIL6 250 aa9.21□□□□□ -0.94
CLIP1-208ENST00000537004 OR10G8Q8NGN5 311 aa9.21□□□□□ -0.94
CLIP1-208ENST00000537004 IGF2BP2-AS1Q96M15 143 aa9.21□□□□□ -0.94
CLIP1-208ENST00000537004 SHANK2-AS3Q9BTD1 123 aa9.21□□□□□ -0.94
CLIP1-208ENST00000537004 TMEM14CQ9P0S9 112 aa9.21□□□□□ -0.94
CLIP1-208ENST00000537004 OR2T8A6NH00 312 aa9.2□□□□□ -0.94
CLIP1-208ENST00000537004 H3BRN7 92 aa9.2□□□□□ -0.94
CLIP1-208ENST00000537004 GGCTO75223 188 aaKnown RBP9.2□□□□□ -0.94
CLIP1-208ENST00000537004 IGHG2P01859 326 aa9.2□□□□□ -0.94
CLIP1-208ENST00000537004 TRGC2P03986 189 aa9.2□□□□□ -0.94
CLIP1-208ENST00000537004 KLK9Q2XQG4 91 aa9.2□□□□□ -0.94
CLIP1-208ENST00000537004 KHDC1LQ5JSQ8 128 aa9.2□□□□□ -0.94
CLIP1-208ENST00000537004 NDUFA11Q86Y39 141 aa9.2□□□□□ -0.94
CLIP1-208ENST00000537004 VN1R17PQ8TDU5 208 aa9.2□□□□□ -0.94
CLIP1-208ENST00000537004 IMMP2LQ96T52 175 aa9.2□□□□□ -0.94
CLIP1-208ENST00000537004 KLK9Q9UKQ9 250 aa9.2□□□□□ -0.94
CLIP1-208ENST00000537004 G3V4G9 280 aa9.19□□□□□ -0.94
CLIP1-208ENST00000537004 H3BTX0 84 aa9.19□□□□□ -0.94
CLIP1-208ENST00000537004 TCAPO15273 167 aa9.19□□□□□ -0.94
CLIP1-208ENST00000537004 WIPF1O43516 503 aa9.19□□□□□ -0.94
CLIP1-208ENST00000537004 SCGB2A1O75556 95 aa9.19□□□□□ -0.94
CLIP1-208ENST00000537004 SLC25A5P05141 298 aaKnown RBP9.19□□□□□ -0.94
CLIP1-208ENST00000537004 CNN1P51911 297 aaKnown RBP9.19□□□□□ -0.94
CLIP1-208ENST00000537004 FAM3BP58499 235 aaPredicted RBP9.19□□□□□ -0.94
CLIP1-208ENST00000537004 GNG5P63218 68 aa9.19□□□□□ -0.94
CLIP1-208ENST00000537004 RHOGP84095 191 aa9.19□□□□□ -0.94
CLIP1-208ENST00000537004 OR5I1Q13606 314 aa9.19□□□□□ -0.94
CLIP1-208ENST00000537004 C15orf32Q32M92 178 aa9.19□□□□□ -0.94
CLIP1-208ENST00000537004 LCNL1Q6ZST4 164 aa9.19□□□□□ -0.94
CLIP1-208ENST00000537004 LINC00479Q96M42 142 aa9.19□□□□□ -0.94
CLIP1-208ENST00000537004 TXN2Q99757 166 aa9.19□□□□□ -0.94
CLIP1-208ENST00000537004 TRBV9A0A0B4J1U6 114 aa9.19□□□□□ -0.94
CLIP1-208ENST00000537004 PGPA6NDG6 321 aa9.19□□□□□ -0.94
CLIP1-208ENST00000537004 IGLV2-8P01709 118 aa9.19□□□□□ -0.94
CLIP1-208ENST00000537004 CTSGP08311 255 aa9.19□□□□□ -0.94
CLIP1-208ENST00000537004 FABP4P15090 132 aa9.19□□□□□ -0.94
CLIP1-208ENST00000537004 FCGR2BP31994 310 aaPredicted RBP9.19□□□□□ -0.94
CLIP1-208ENST00000537004 USF2Q15853 346 aaPredicted RBP9.19□□□□□ -0.94
CLIP1-208ENST00000537004 C18orf65Q6ZTR6 163 aa9.19□□□□□ -0.94
CLIP1-208ENST00000537004 PACRGQ96M98 296 aaPredicted RBP9.19□□□□□ -0.94
CLIP1-208ENST00000537004 Q9H3A6 140 aa9.19□□□□□ -0.94
CLIP1-208ENST00000537004 SRD5A3Q9H8P0 318 aa9.19□□□□□ -0.94
CLIP1-208ENST00000537004 ZNF586Q9NXT0 402 aa9.19□□□□□ -0.94
CLIP1-208ENST00000537004 A8MWP6 167 aa9.18□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 98.5 ms