RNA–Protein interactions for RNA: ENST00000533806.5

VPS28-216, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 650 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-216ENST00000533806 AMTNQ6UX39 209 aa9.43□□□□□ -0.9
VPS28-216ENST00000533806 RNF182Q8N6D2 247 aa9.43□□□□□ -0.9
VPS28-216ENST00000533806 ZNF709Q8N972 641 aa9.43□□□□□ -0.9
VPS28-216ENST00000533806 OR11H2Q8NH07 326 aa9.43□□□□□ -0.9
VPS28-216ENST00000533806 PARD6GQ9BYG4 376 aaPredicted RBP9.43□□□□□ -0.9
VPS28-216ENST00000533806 HRH4Q9H3N8 390 aa9.43□□□□□ -0.9
VPS28-216ENST00000533806 ZNF331Q9NQX6 463 aaPredicted RBP9.43□□□□□ -0.9
VPS28-216ENST00000533806 NUTF2P61970 127 aaKnown RBP9.42□□□□□ -0.9
VPS28-216ENST00000533806 FAM78BQ5VT40 261 aa9.42□□□□□ -0.9
VPS28-216ENST00000533806 TMEM14CQ9P0S9 112 aa9.42□□□□□ -0.9
VPS28-216ENST00000533806 X6R8D5 127 aa9.42□□□□□ -0.9
VPS28-216ENST00000533806 G3V3Q6 166 aa9.41□□□□□ -0.9
VPS28-216ENST00000533806 SLC17A3O00476 420 aa9.41□□□□□ -0.9
VPS28-216ENST00000533806 HLA-DMBP28068 263 aa9.41□□□□□ -0.9
VPS28-216ENST00000533806 FGL1Q08830 312 aa9.41□□□□□ -0.9
VPS28-216ENST00000533806 PSG3Q16557 428 aa9.41□□□□□ -0.9
VPS28-216ENST00000533806 EBLN2Q6P2I7 272 aa9.41□□□□□ -0.9
VPS28-216ENST00000533806 Q8NAQ8 132 aa9.41□□□□□ -0.9
VPS28-216ENST00000533806 IL17DQ8TAD2 202 aa9.41□□□□□ -0.9
VPS28-216ENST00000533806 FAM167A-AS1Q96KT0 104 aa9.41□□□□□ -0.9
VPS28-216ENST00000533806 AQP10Q96PS8 301 aa9.41□□□□□ -0.9
VPS28-216ENST00000533806 C11orf68Q9H3H3 251 aaKnown RBP9.41□□□□□ -0.9
VPS28-216ENST00000533806 CLEC5AQ9NY25 188 aa9.41□□□□□ -0.9
VPS28-216ENST00000533806 IGKV3-20P01619 116 aa9.4□□□□□ -0.9
VPS28-216ENST00000533806 SNRPCP09234 159 aaKnown RBP9.4□□□□□ -0.9
VPS28-216ENST00000533806 GUK1Q16774 197 aa9.4□□□□□ -0.9
VPS28-216ENST00000533806 ZFAND6Q6FIF0 208 aa9.4□□□□□ -0.9
VPS28-216ENST00000533806 LCN15Q6UWW0 184 aa9.4□□□□□ -0.9
VPS28-216ENST00000533806 ZNF705AQ6ZN79 300 aaPredicted RBP9.4□□□□□ -0.9
VPS28-216ENST00000533806 LYSTQ99698 3801 aa9.4□□□□□ -0.9
VPS28-216ENST00000533806 SLC50A1Q9BRV3 221 aa9.4□□□□□ -0.9
VPS28-216ENST00000533806 C1QTNF4Q9BXJ3 329 aa9.4□□□□□ -0.9
VPS28-216ENST00000533806 SMIM3Q9BZL3 60 aa9.4□□□□□ -0.9
VPS28-216ENST00000533806 SLC35B3Q9H1N7 401 aa9.4□□□□□ -0.9
VPS28-216ENST00000533806 KCNIP2Q9NS61 270 aa9.4□□□□□ -0.9
VPS28-216ENST00000533806 ZNF586Q9NXT0 402 aa9.4□□□□□ -0.9
VPS28-216ENST00000533806 XCL2Q9UBD3 114 aa9.4□□□□□ -0.9
VPS28-216ENST00000533806 RYR2Q92736 4967 aa9.4□□□□□ -0.9
VPS28-216ENST00000533806 PLECQ15149 4684 aaKnown RBP9.4□□□□□ -0.91
VPS28-216ENST00000533806 TRBV19A0A075B6N1 114 aa9.39□□□□□ -0.91
VPS28-216ENST00000533806 ZNF705FA8MVS1 300 aaPredicted RBP9.39□□□□□ -0.91
VPS28-216ENST00000533806 C17orf112F2Z3M2 114 aa9.39□□□□□ -0.91
VPS28-216ENST00000533806 ZNF253O75346 499 aa9.39□□□□□ -0.91
VPS28-216ENST00000533806 NDUFB4O95168 129 aa9.39□□□□□ -0.91
VPS28-216ENST00000533806 ZNF705DP0CH99 300 aaPredicted RBP9.39□□□□□ -0.91
VPS28-216ENST00000533806 ZNF705BP0CI00 300 aaPredicted RBP9.39□□□□□ -0.91
VPS28-216ENST00000533806 RBMY1A1P0DJD3 496 aaKnown RBP9.39□□□□□ -0.91
VPS28-216ENST00000533806 RBMY1CP0DJD4 496 aa9.39□□□□□ -0.91
VPS28-216ENST00000533806 CNN1P51911 297 aaKnown RBP9.39□□□□□ -0.91
VPS28-216ENST00000533806 PSG9Q00887 426 aa9.39□□□□□ -0.91
VPS28-216ENST00000533806 RBMY1FQ15415 496 aaKnown RBP9.39□□□□□ -0.91
VPS28-216ENST00000533806 MIR17HGQ75NE6 70 aa9.39□□□□□ -0.91
VPS28-216ENST00000533806 OR4B1Q8NGF8 309 aa9.39□□□□□ -0.91
VPS28-216ENST00000533806 SLC25A2Q9BXI2 301 aa9.39□□□□□ -0.91
VPS28-216ENST00000533806 RFNGQ9Y644 331 aa9.39□□□□□ -0.91
VPS28-216ENST00000533806 SACSQ9NZJ4 4579 aa9.39□□□□□ -0.91
VPS28-216ENST00000533806 RNF222A6NCQ9 220 aa9.38□□□□□ -0.91
VPS28-216ENST00000533806 H3BTX0 84 aa9.38□□□□□ -0.91
VPS28-216ENST00000533806 DUSP14O95147 198 aaKnown RBP9.38□□□□□ -0.91
VPS28-216ENST00000533806 IFNA5P01569 189 aa9.38□□□□□ -0.91
VPS28-216ENST00000533806 HIST1H1EP10412 219 aaKnown RBP9.38□□□□□ -0.91
VPS28-216ENST00000533806 MIFP14174 115 aa9.38□□□□□ -0.91
VPS28-216ENST00000533806 ZNF738Q8NE65 137 aa9.38□□□□□ -0.91
VPS28-216ENST00000533806 OR8A1Q8NGG7 326 aa9.38□□□□□ -0.91
VPS28-216ENST00000533806 LRRC20Q8TCA0 184 aa9.38□□□□□ -0.91
VPS28-216ENST00000533806 NEU1Q99519 415 aa9.38□□□□□ -0.91
VPS28-216ENST00000533806 TNFSF18Q9UNG2 199 aa9.38□□□□□ -0.91
VPS28-216ENST00000533806 IGHV4-28A0A0C4DH34 117 aa9.37□□□□□ -0.91
VPS28-216ENST00000533806 PRAC2D3DTV9 90 aa9.37□□□□□ -0.91
VPS28-216ENST00000533806 CRXO43186 299 aaPredicted RBP9.37□□□□□ -0.91
VPS28-216ENST00000533806 PYYP10082 97 aa9.37□□□□□ -0.91
VPS28-216ENST00000533806 FXYD7P58549 80 aa9.37□□□□□ -0.91
VPS28-216ENST00000533806 C1orf158Q8N1D5 194 aa9.37□□□□□ -0.91
VPS28-216ENST00000533806 OR2T35Q8NGX2 323 aa9.37□□□□□ -0.91
VPS28-216ENST00000533806 SCGB1C1Q8TD33 95 aa9.37□□□□□ -0.91
VPS28-216ENST00000533806 RPUSD4Q96CM3 377 aaKnown RBP9.37□□□□□ -0.91
VPS28-216ENST00000533806 ZNF503Q96F45 646 aa9.37□□□□□ -0.91
VPS28-216ENST00000533806 MRPL32Q9BYC8 188 aaKnown RBP9.37□□□□□ -0.91
VPS28-216ENST00000533806 FUT9Q9Y231 359 aa9.37□□□□□ -0.91
VPS28-216ENST00000533806 DEFB4AO15263 64 aa9.36□□□□□ -0.91
VPS28-216ENST00000533806 PDE6HQ13956 83 aa9.36□□□□□ -0.91
VPS28-216ENST00000533806 FFAR4Q5NUL3 377 aa9.36□□□□□ -0.91
VPS28-216ENST00000533806 MFFQ9GZY8 342 aa9.36□□□□□ -0.91
VPS28-216ENST00000533806 TIMM9Q9Y5J7 89 aa9.36□□□□□ -0.91
VPS28-216ENST00000533806 DNAH1Q9P2D7 4330 aa9.35□□□□□ -0.91
VPS28-216ENST00000533806 PRB4P10163 310 aaPredicted RBP9.35□□□□□ -0.91
VPS28-216ENST00000533806 FXYD5Q96DB9 178 aa9.35□□□□□ -0.91
VPS28-216ENST00000533806 MRPL53Q96EL3 112 aaKnown RBP9.35□□□□□ -0.91
VPS28-216ENST00000533806 IGF2BP2-AS1Q96M15 143 aa9.35□□□□□ -0.91
VPS28-216ENST00000533806 OR51M1Q9H341 326 aa9.35□□□□□ -0.91
VPS28-216ENST00000533806 SMIM9A6NGZ8 99 aa9.34□□□□□ -0.91
VPS28-216ENST00000533806 M0R2Z0 102 aa9.34□□□□□ -0.91
VPS28-216ENST00000533806 AMBPP02760 352 aa9.34□□□□□ -0.91
VPS28-216ENST00000533806 NBEAP1P0C6P0 100 aa9.34□□□□□ -0.91
VPS28-216ENST00000533806 HIST1H1AQ02539 215 aaPredicted RBP9.34□□□□□ -0.91
VPS28-216ENST00000533806 ZNF266Q14584 549 aa9.34□□□□□ -0.91
VPS28-216ENST00000533806 OR2G3Q8NGZ4 309 aa9.34□□□□□ -0.91
VPS28-216ENST00000533806 RNF141Q8WVD5 230 aa9.34□□□□□ -0.91
VPS28-216ENST00000533806 FXYD6-FXYD2A0A087WZ82 144 aa9.33□□□□□ -0.92
VPS28-216ENST00000533806 NPIPB6E9PJ23 425 aa9.33□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms