RNA–Protein interactions for RNA: ENST00000530790.5

VPS28-211, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 561 nt, Biotype protein coding, Subcellular localisation Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-211ENST00000530790 CXCL2P19875 107 aa9.55□□□□□ -0.88
VPS28-211ENST00000530790 CXCL3P19876 107 aa9.55□□□□□ -0.88
VPS28-211ENST00000530790 SULT1A1P50225 295 aa9.55□□□□□ -0.88
VPS28-211ENST00000530790 HBG1P69891 147 aa9.55□□□□□ -0.88
VPS28-211ENST00000530790 HBG2P69892 147 aa9.55□□□□□ -0.88
VPS28-211ENST00000530790 HIST1H1AQ02539 215 aaPredicted RBP9.55□□□□□ -0.88
VPS28-211ENST00000530790 RAB32Q13637 225 aa9.55□□□□□ -0.88
VPS28-211ENST00000530790 SPINK13Q1W4C9 94 aa9.55□□□□□ -0.88
VPS28-211ENST00000530790 RRN3P1Q2M238 152 aa9.55□□□□□ -0.88
VPS28-211ENST00000530790 C10orf113Q5VZT2 155 aa9.55□□□□□ -0.88
VPS28-211ENST00000530790 LCN15Q6UWW0 184 aa9.55□□□□□ -0.88
VPS28-211ENST00000530790 BPIFA4PQ86YQ2 179 aa9.55□□□□□ -0.88
VPS28-211ENST00000530790 C1orf158Q8N1D5 194 aa9.55□□□□□ -0.88
VPS28-211ENST00000530790 OR11H7Q8NGC8 314 aa9.55□□□□□ -0.88
VPS28-211ENST00000530790 RNF126Q9BV68 326 aa9.55□□□□□ -0.88
VPS28-211ENST00000530790 BOLA2-SMG1P6H3BVE0 249 aa9.54□□□□□ -0.88
VPS28-211ENST00000530790 M0R2Z0 102 aa9.54□□□□□ -0.88
VPS28-211ENST00000530790 S100A11P31949 105 aa9.54□□□□□ -0.88
VPS28-211ENST00000530790 BAXQ07812 192 aa9.54□□□□□ -0.88
VPS28-211ENST00000530790 Q6ZRG5 221 aa9.54□□□□□ -0.88
VPS28-211ENST00000530790 NRARPQ7Z6K4 114 aa9.54□□□□□ -0.88
VPS28-211ENST00000530790 TMEM252Q8N6L7 170 aa9.54□□□□□ -0.88
VPS28-211ENST00000530790 SLC50A1Q9BRV3 221 aa9.54□□□□□ -0.88
VPS28-211ENST00000530790 WDR83OSQ9Y284 106 aa9.54□□□□□ -0.88
VPS28-211ENST00000530790 IGSF23A1L1A6 192 aa9.53□□□□□ -0.88
VPS28-211ENST00000530790 A6NHS1 94 aa9.53□□□□□ -0.88
VPS28-211ENST00000530790 MRPS12O15235 138 aaKnown RBP9.53□□□□□ -0.88
VPS28-211ENST00000530790 IL15RAQ13261 267 aa9.53□□□□□ -0.88
VPS28-211ENST00000530790 PSG3Q16557 428 aa9.53□□□□□ -0.88
VPS28-211ENST00000530790 VWC2Q2TAL6 325 aa9.53□□□□□ -0.88
VPS28-211ENST00000530790 FAM222AQ5U5X8 452 aa9.53□□□□□ -0.88
VPS28-211ENST00000530790 MIC13Q5XKP0 118 aa9.53□□□□□ -0.88
VPS28-211ENST00000530790 BAP18Q8IXM2 172 aa9.53□□□□□ -0.88
VPS28-211ENST00000530790 OR8A1Q8NGG7 326 aa9.53□□□□□ -0.88
VPS28-211ENST00000530790 OR1L4Q8NGR5 311 aa9.53□□□□□ -0.88
VPS28-211ENST00000530790 TMEM37Q8WXS4 190 aa9.53□□□□□ -0.88
VPS28-211ENST00000530790 PFDN5Q99471 154 aa9.53□□□□□ -0.88
VPS28-211ENST00000530790 PPP1R14DQ9NXH3 145 aa9.53□□□□□ -0.88
VPS28-211ENST00000530790 DKK2Q9UBU2 259 aa9.53□□□□□ -0.88
VPS28-211ENST00000530790 YTHDF2Q9Y5A9 579 aaKnown RBP9.53□□□□□ -0.88
VPS28-211ENST00000530790 PRAF2O60831 178 aa9.52□□□□□ -0.89
VPS28-211ENST00000530790 RHOBP62745 196 aa9.52□□□□□ -0.89
VPS28-211ENST00000530790 PRR20EP86478 221 aa9.52□□□□□ -0.89
VPS28-211ENST00000530790 PRR20CP86479 221 aa9.52□□□□□ -0.89
VPS28-211ENST00000530790 PRR20DP86480 221 aa9.52□□□□□ -0.89
VPS28-211ENST00000530790 PRR20BP86481 221 aa9.52□□□□□ -0.89
VPS28-211ENST00000530790 PRR20AP86496 221 aa9.52□□□□□ -0.89
VPS28-211ENST00000530790 OPCMLQ14982 345 aa9.52□□□□□ -0.89
VPS28-211ENST00000530790 RPUSD4Q96CM3 377 aaKnown RBP9.52□□□□□ -0.89
VPS28-211ENST00000530790 NIPSNAP3BQ9BS92 247 aa9.52□□□□□ -0.89
VPS28-211ENST00000530790 NDUFAF3Q9BU61 184 aa9.52□□□□□ -0.89
VPS28-211ENST00000530790 ZNF331Q9NQX6 463 aaPredicted RBP9.52□□□□□ -0.89
VPS28-211ENST00000530790 CRXO43186 299 aaPredicted RBP9.51□□□□□ -0.89
VPS28-211ENST00000530790 SNRPCP09234 159 aaKnown RBP9.51□□□□□ -0.89
VPS28-211ENST00000530790 FGF7P21781 194 aa9.51□□□□□ -0.89
VPS28-211ENST00000530790 B2MP61769 119 aa9.51□□□□□ -0.89
VPS28-211ENST00000530790 ATP6V1FQ16864 119 aa9.51□□□□□ -0.89
VPS28-211ENST00000530790 MORN5Q5VZ52 161 aa9.51□□□□□ -0.89
VPS28-211ENST00000530790 DNAJC4Q9NNZ3 241 aa9.51□□□□□ -0.89
VPS28-211ENST00000530790 PXMP4Q9Y6I8 212 aa9.51□□□□□ -0.89
VPS28-211ENST00000530790 BIRC6Q9NR09 4857 aa9.5□□□□□ -0.89
VPS28-211ENST00000530790 TRAV12-2A0A075B6T6 113 aa9.5□□□□□ -0.89
VPS28-211ENST00000530790 H3BTX0 84 aa9.5□□□□□ -0.89
VPS28-211ENST00000530790 SLC17A3O00476 420 aa9.5□□□□□ -0.89
VPS28-211ENST00000530790 RLN2P04090 185 aa9.5□□□□□ -0.89
VPS28-211ENST00000530790 IGLC2P0DOY2 106 aa9.5□□□□□ -0.89
VPS28-211ENST00000530790 RPL29P47914 159 aaKnown RBP9.5□□□□□ -0.89
VPS28-211ENST00000530790 DEFA1P59665 94 aa9.5□□□□□ -0.89
VPS28-211ENST00000530790 DEFA3P59666 94 aa9.5□□□□□ -0.89
VPS28-211ENST00000530790 IFITM3Q01628 133 aa9.5□□□□□ -0.89
VPS28-211ENST00000530790 LRRC37A5PQ49AS3 106 aa9.5□□□□□ -0.89
VPS28-211ENST00000530790 TMEM256Q8N2U0 113 aa9.5□□□□□ -0.89
VPS28-211ENST00000530790 SLC39A9Q9NUM3 307 aa9.5□□□□□ -0.89
VPS28-211ENST00000530790 ZNF705GA8MUZ8 300 aaPredicted RBP9.49□□□□□ -0.89
VPS28-211ENST00000530790 INMT-MINDY4F8WBC2 141 aa9.49□□□□□ -0.89
VPS28-211ENST00000530790 MPDU1O75352 247 aa9.49□□□□□ -0.89
VPS28-211ENST00000530790 SIX6O95475 246 aa9.49□□□□□ -0.89
VPS28-211ENST00000530790 PRB4P10163 310 aaPredicted RBP9.49□□□□□ -0.89
VPS28-211ENST00000530790 DAD1P61803 113 aa9.49□□□□□ -0.89
VPS28-211ENST00000530790 OXA1LQ15070 435 aa9.49□□□□□ -0.89
VPS28-211ENST00000530790 GUK1Q16774 197 aa9.49□□□□□ -0.89
VPS28-211ENST00000530790 OR10J6PQ8NGY7 276 aa9.49□□□□□ -0.89
VPS28-211ENST00000530790 CHAC2Q8WUX2 184 aa9.49□□□□□ -0.89
VPS28-211ENST00000530790 NMES1Q9C002 83 aa9.49□□□□□ -0.89
VPS28-211ENST00000530790 SLC25A31Q9H0C2 315 aa9.49□□□□□ -0.89
VPS28-211ENST00000530790 TRAV5A0A0B4J249 113 aa9.48□□□□□ -0.89
VPS28-211ENST00000530790 E5RGE8 158 aa9.48□□□□□ -0.89
VPS28-211ENST00000530790 P0DMU3 169 aa9.48□□□□□ -0.89
VPS28-211ENST00000530790 FAM231AP0DMU4 169 aa9.48□□□□□ -0.89
VPS28-211ENST00000530790 FAM231CP0DMU5 169 aa9.48□□□□□ -0.89
VPS28-211ENST00000530790 HTN3P15516 51 aa9.48□□□□□ -0.89
VPS28-211ENST00000530790 TSPOP30536 169 aa9.48□□□□□ -0.89
VPS28-211ENST00000530790 CDKN1BP46527 198 aa9.48□□□□□ -0.89
VPS28-211ENST00000530790 CYCSP99999 105 aaKnown RBP9.48□□□□□ -0.89
VPS28-211ENST00000530790 OR5C1Q8NGR4 320 aa9.48□□□□□ -0.89
VPS28-211ENST00000530790 FAM210BQ96KR6 192 aa9.48□□□□□ -0.89
VPS28-211ENST00000530790 NPCDR1Q9BY65 106 aa9.48□□□□□ -0.89
VPS28-211ENST00000530790 LYRM9A8MSI8 78 aa9.47□□□□□ -0.89
VPS28-211ENST00000530790 H3BQ15 152 aa9.47□□□□□ -0.89
VPS28-211ENST00000530790 THAP6Q8TBB0 222 aa9.47□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 75.9 ms