RNA–Protein interactions for RNA: ENST00000526734.5

VPS28-206, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 570 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-206ENST00000526734 SLC50A1Q9BRV3 221 aa14.89□□□□□ -0.03
VPS28-206ENST00000526734 SLC25A31Q9H0C2 315 aa14.89□□□□□ -0.03
VPS28-206ENST00000526734 TEX48A0A1B0GUV7 120 aa14.88□□□□□ -0.03
VPS28-206ENST00000526734 E5RGE8 158 aa14.88□□□□□ -0.03
VPS28-206ENST00000526734 RPL29P47914 159 aaKnown RBP14.88□□□□□ -0.03
VPS28-206ENST00000526734 ZNF738Q8NE65 137 aa14.88□□□□□ -0.03
VPS28-206ENST00000526734 C2CD4CQ8TF44 421 aa14.88□□□□□ -0.03
VPS28-206ENST00000526734 SLC35B3Q9H1N7 401 aa14.88□□□□□ -0.03
VPS28-206ENST00000526734 UBE2L5PA0A1B0GUS4 154 aa14.87□□□□□ -0.03
VPS28-206ENST00000526734 MRPS12O15235 138 aaKnown RBP14.87□□□□□ -0.03
VPS28-206ENST00000526734 CXCL3P19876 107 aa14.87□□□□□ -0.03
VPS28-206ENST00000526734 HLA-DMBP28068 263 aa14.87□□□□□ -0.03
VPS28-206ENST00000526734 BAXQ07812 192 aa14.87□□□□□ -0.03
VPS28-206ENST00000526734 TMEM37Q8WXS4 190 aa14.87□□□□□ -0.03
VPS28-206ENST00000526734 DNAJC4Q9NNZ3 241 aa14.87□□□□□ -0.03
VPS28-206ENST00000526734 RFNGQ9Y644 331 aa14.87□□□□□ -0.03
VPS28-206ENST00000526734 TRAV10A0A0B4J240 114 aa14.86□□□□□ -0.03
VPS28-206ENST00000526734 LY6G6CO95867 125 aa14.86□□□□□ -0.03
VPS28-206ENST00000526734 CNN1P51911 297 aaKnown RBP14.86□□□□□ -0.03
VPS28-206ENST00000526734 FXYD7P58549 80 aa14.86□□□□□ -0.03
VPS28-206ENST00000526734 OPCMLQ14982 345 aa14.86□□□□□ -0.03
VPS28-206ENST00000526734 PSG3Q16557 428 aa14.86□□□□□ -0.03
VPS28-206ENST00000526734 AMTNQ6UX39 209 aa14.86□□□□□ -0.03
VPS28-206ENST00000526734 RNF182Q8N6D2 247 aa14.86□□□□□ -0.03
VPS28-206ENST00000526734 IGF2BP2-AS1Q96M15 143 aa14.86□□□□□ -0.03
VPS28-206ENST00000526734 ALMS1Q8TCU4 4167 aa14.86□□□□□ -0.03
VPS28-206ENST00000526734 B2MP61769 119 aa14.85□□□□□ -0.03
VPS28-206ENST00000526734 MIC13Q5XKP0 118 aa14.85□□□□□ -0.03
VPS28-206ENST00000526734 ZNF331Q9NQX6 463 aaPredicted RBP14.85□□□□□ -0.03
VPS28-206ENST00000526734 SLC39A9Q9NUM3 307 aa14.85□□□□□ -0.03
VPS28-206ENST00000526734 PLECQ15149 4684 aaKnown RBP14.85□□□□□ -0.03
VPS28-206ENST00000526734 DNAH1Q9P2D7 4330 aa14.84□□□□□ -0.03
VPS28-206ENST00000526734 SIX6O95475 246 aa14.84□□□□□ -0.03
VPS28-206ENST00000526734 HBE1P02100 147 aa14.84□□□□□ -0.03
VPS28-206ENST00000526734 PET100P0DJ07 73 aa14.84□□□□□ -0.03
VPS28-206ENST00000526734 FGF7P21781 194 aa14.84□□□□□ -0.03
VPS28-206ENST00000526734 GUK1Q16774 197 aa14.84□□□□□ -0.03
VPS28-206ENST00000526734 LGALS9CQ6DKI2 356 aa14.84□□□□□ -0.03
VPS28-206ENST00000526734 OR11H7Q8NGC8 314 aa14.84□□□□□ -0.03
VPS28-206ENST00000526734 OR8A1Q8NGG7 326 aa14.84□□□□□ -0.03
VPS28-206ENST00000526734 KCNIP2Q9NS61 270 aa14.84□□□□□ -0.03
VPS28-206ENST00000526734 PXMP4Q9Y6I8 212 aa14.84□□□□□ -0.03
VPS28-206ENST00000526734 IGHV3OR16-12A0A075B7B8 117 aa14.83□□□□□ -0.04
VPS28-206ENST00000526734 SSNA1O43805 119 aa14.83□□□□□ -0.04
VPS28-206ENST00000526734 INSP01308 110 aa14.83□□□□□ -0.04
VPS28-206ENST00000526734 SPART-AS1P0CW21 52 aa14.83□□□□□ -0.04
VPS28-206ENST00000526734 IGFL4Q6B9Z1 124 aa14.83□□□□□ -0.04
VPS28-206ENST00000526734 Q6ZTC4 211 aa14.83□□□□□ -0.04
VPS28-206ENST00000526734 BOLA2-SMG1P6H3BVE0 249 aa14.82□□□□□ -0.04
VPS28-206ENST00000526734 IGLC2P0DOY2 106 aa14.82□□□□□ -0.04
VPS28-206ENST00000526734 LRRC37A5PQ49AS3 106 aa14.82□□□□□ -0.04
VPS28-206ENST00000526734 C1orf158Q8N1D5 194 aa14.82□□□□□ -0.04
VPS28-206ENST00000526734 TMEM208Q9BTX3 173 aa14.82□□□□□ -0.04
VPS28-206ENST00000526734 ZNF253O75346 499 aa14.81□□□□□ -0.04
VPS28-206ENST00000526734 HIST1H1AQ02539 215 aaPredicted RBP14.81□□□□□ -0.04
VPS28-206ENST00000526734 RRN3P1Q2M238 152 aa14.81□□□□□ -0.04
VPS28-206ENST00000526734 OR5C1Q8NGR4 320 aa14.81□□□□□ -0.04
VPS28-206ENST00000526734 RPUSD4Q96CM3 377 aaKnown RBP14.81□□□□□ -0.04
VPS28-206ENST00000526734 NPCDR1Q9BY65 106 aa14.81□□□□□ -0.04
VPS28-206ENST00000526734 PPP1R14DQ9NXH3 145 aa14.81□□□□□ -0.04
VPS28-206ENST00000526734 OR5AC2Q9NZP5 309 aa14.81□□□□□ -0.04
VPS28-206ENST00000526734 CELA1Q9UNI1 258 aa14.81□□□□□ -0.04
VPS28-206ENST00000526734 H2BFSP57053 126 aa14.8□□□□□ -0.04
VPS28-206ENST00000526734 NHLH2Q02577 135 aa14.8□□□□□ -0.04
VPS28-206ENST00000526734 C12orf74Q32Q52 190 aa14.8□□□□□ -0.04
VPS28-206ENST00000526734 MORN5Q5VZ52 161 aa14.8□□□□□ -0.04
VPS28-206ENST00000526734 PPP1R1CQ8WVI7 109 aa14.8□□□□□ -0.04
VPS28-206ENST00000526734 RNF126Q9BV68 326 aa14.8□□□□□ -0.04
VPS28-206ENST00000526734 LOC102723971A0A1B0GUV8 181 aa14.79□□□□□ -0.04
VPS28-206ENST00000526734 IGLL5B9A064 214 aa14.79□□□□□ -0.04
VPS28-206ENST00000526734 H0YIZ8 118 aa14.79□□□□□ -0.04
VPS28-206ENST00000526734 RHOBP62745 196 aa14.79□□□□□ -0.04
VPS28-206ENST00000526734 SPINK13Q1W4C9 94 aa14.79□□□□□ -0.04
VPS28-206ENST00000526734 TMEM256Q8N2U0 113 aa14.79□□□□□ -0.04
VPS28-206ENST00000526734 TMEM14CQ9P0S9 112 aa14.79□□□□□ -0.04
VPS28-206ENST00000526734 M0R2Z0 102 aa14.78□□□□□ -0.04
VPS28-206ENST00000526734 SAT2Q96F10 170 aaPredicted RBP14.78□□□□□ -0.04
VPS28-206ENST00000526734 DEFB131BA0A096LNP1 70 aa14.77□□□□□ -0.05
VPS28-206ENST00000526734 CRXO43186 299 aaPredicted RBP14.77□□□□□ -0.05
VPS28-206ENST00000526734 MPC2O95563 127 aa14.77□□□□□ -0.05
VPS28-206ENST00000526734 TSPOP30536 169 aa14.77□□□□□ -0.05
VPS28-206ENST00000526734 EMP1P54849 157 aa14.77□□□□□ -0.05
VPS28-206ENST00000526734 OXA1LQ15070 435 aa14.77□□□□□ -0.05
VPS28-206ENST00000526734 OR10J6PQ8NGY7 276 aa14.77□□□□□ -0.05
VPS28-206ENST00000526734 DKK2Q9UBU2 259 aa14.77□□□□□ -0.05
VPS28-206ENST00000526734 APLNQ9ULZ1 77 aa14.77□□□□□ -0.05
VPS28-206ENST00000526734 C17orf112F2Z3M2 114 aa14.76□□□□□ -0.05
VPS28-206ENST00000526734 H3BQ15 152 aa14.76□□□□□ -0.05
VPS28-206ENST00000526734 SLC17A3O00476 420 aa14.76□□□□□ -0.05
VPS28-206ENST00000526734 PTTG1O95997 202 aa14.76□□□□□ -0.05
VPS28-206ENST00000526734 PDE6HQ13956 83 aa14.76□□□□□ -0.05
VPS28-206ENST00000526734 CLINT1Q14677 625 aa14.76□□□□□ -0.05
VPS28-206ENST00000526734 THAP6Q8TBB0 222 aa14.76□□□□□ -0.05
VPS28-206ENST00000526734 MRPL53Q96EL3 112 aaKnown RBP14.76□□□□□ -0.05
VPS28-206ENST00000526734 C20orf144Q9BQM9 153 aa14.76□□□□□ -0.05
VPS28-206ENST00000526734 WDR61Q9GZS3 305 aaKnown RBP14.76□□□□□ -0.05
VPS28-206ENST00000526734 IGHV4-4A0A075B6R2 117 aa14.75□□□□□ -0.05
VPS28-206ENST00000526734 TRAV5A0A0B4J249 113 aa14.75□□□□□ -0.05
VPS28-206ENST00000526734 HIST1H1EP10412 219 aaKnown RBP14.75□□□□□ -0.05
VPS28-206ENST00000526734 CDKN1BP46527 198 aa14.75□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms