RNA–Protein interactions for RNA: ENST00000526553.5

CD44-223, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 571 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-223ENST00000526553 B2MP61769 119 aa1.94□□□□□ -2.1
CD44-223ENST00000526553 COPZ1P61923 177 aa1.94□□□□□ -2.1
CD44-223ENST00000526553 HIST1H4AP62805 103 aaKnown RBP1.94□□□□□ -2.1
CD44-223ENST00000526553 GUK1Q16774 197 aa1.94□□□□□ -2.1
CD44-223ENST00000526553 PPP1R2P3Q6NXS1 205 aa1.94□□□□□ -2.1
CD44-223ENST00000526553 TMEM86AQ8N2M4 240 aa1.94□□□□□ -2.1
CD44-223ENST00000526553 SLC35F6Q8N357 371 aa1.94□□□□□ -2.1
CD44-223ENST00000526553 C12orf29Q8N999 325 aa1.94□□□□□ -2.1
CD44-223ENST00000526553 MRPL30Q8TCC3 161 aaKnown RBP1.94□□□□□ -2.1
CD44-223ENST00000526553 NAT14Q8WUY8 206 aa1.94□□□□□ -2.1
CD44-223ENST00000526553 KLK6Q92876 244 aa1.94□□□□□ -2.1
CD44-223ENST00000526553 BTF3L4Q96K17 158 aa1.94□□□□□ -2.1
CD44-223ENST00000526553 DOK5Q9P104 306 aa1.94□□□□□ -2.1
CD44-223ENST00000526553 BAIAP2Q9UQB8 552 aa1.94□□□□□ -2.1
CD44-223ENST00000526553 ASB4Q9Y574 426 aa1.94□□□□□ -2.1
CD44-223ENST00000526553 F8P00451 2351 aa1.94□□□□□ -2.1
CD44-223ENST00000526553 MYO7BQ6PIF6 2116 aa1.94□□□□□ -2.1
CD44-223ENST00000526553 PRRC2CQ9Y520 2896 aaKnown RBP1.94□□□□□ -2.1
CD44-223ENST00000526553 RTTNQ86VV8 2226 aa1.94□□□□□ -2.1
CD44-223ENST00000526553 ANKRD36A6QL64 1941 aa1.93□□□□□ -2.1
CD44-223ENST00000526553 LRBAP50851 2863 aa1.93□□□□□ -2.1
CD44-223ENST00000526553 CCDC88CQ9P219 2028 aa1.93□□□□□ -2.1
CD44-223ENST00000526553 CELSR2Q9HCU4 2923 aa1.93□□□□□ -2.1
CD44-223ENST00000526553 ZFHX3Q15911 3703 aa1.93□□□□□ -2.1
CD44-223ENST00000526553 PCNX1Q96RV3 2341 aa1.93□□□□□ -2.1
CD44-223ENST00000526553 TRBV20OR9-2A0A075B6H5 130 aa1.93□□□□□ -2.1
CD44-223ENST00000526553 A0A087WUJ7 227 aa1.93□□□□□ -2.1
CD44-223ENST00000526553 A0A0J9YY10 115 aa1.93□□□□□ -2.1
CD44-223ENST00000526553 A0A1B0GX78 115 aa1.93□□□□□ -2.1
CD44-223ENST00000526553 ATP6V1G2-DDX39BF2Z307 99 aa1.93□□□□□ -2.1
CD44-223ENST00000526553 I3L521 148 aa1.93□□□□□ -2.1
CD44-223ENST00000526553 J3QRE1 110 aa1.93□□□□□ -2.1
CD44-223ENST00000526553 CREBL2O60519 120 aaPredicted RBP1.93□□□□□ -2.1
CD44-223ENST00000526553 BANF1O75531 89 aa1.93□□□□□ -2.1
CD44-223ENST00000526553 IFNA7P01567 189 aa1.93□□□□□ -2.1
CD44-223ENST00000526553 S100A8P05109 93 aa1.93□□□□□ -2.1
CD44-223ENST00000526553 S100PP25815 95 aa1.93□□□□□ -2.1
CD44-223ENST00000526553 RPL22P35268 128 aaKnown RBP1.93□□□□□ -2.1
CD44-223ENST00000526553 ARF6P62330 175 aa1.93□□□□□ -2.1
CD44-223ENST00000526553 EIF5AP63241 154 aaKnown RBP1.93□□□□□ -2.1
CD44-223ENST00000526553 ZNF90Q03938 601 aa1.93□□□□□ -2.1
CD44-223ENST00000526553 RELAQ04206 551 aa1.93□□□□□ -2.1
CD44-223ENST00000526553 IAH1Q2TAA2 248 aaPredicted RBP1.93□□□□□ -2.1
CD44-223ENST00000526553 HSD17B12Q53GQ0 312 aa1.93□□□□□ -2.1
CD44-223ENST00000526553 LPCAT3Q6P1A2 487 aa1.93□□□□□ -2.1
CD44-223ENST00000526553 AGTRAPQ6RW13 159 aa1.93□□□□□ -2.1
CD44-223ENST00000526553 LYZL1Q6UWQ5 148 aa1.93□□□□□ -2.1
CD44-223ENST00000526553 SLC35E3Q7Z769 313 aa1.93□□□□□ -2.1
CD44-223ENST00000526553 CLVS1Q8IUQ0 354 aaPredicted RBP1.93□□□□□ -2.1
CD44-223ENST00000526553 OR2T4Q8NH00 348 aa1.93□□□□□ -2.1
CD44-223ENST00000526553 OR4C6Q8NH72 309 aa1.93□□□□□ -2.1
CD44-223ENST00000526553 ACOT12Q8WYK0 555 aa1.93□□□□□ -2.1
CD44-223ENST00000526553 PPP1R2P1Q96PQ5 205 aa1.93□□□□□ -2.1
CD44-223ENST00000526553 TTTY13Q9BZ97 58 aa1.93□□□□□ -2.1
CD44-223ENST00000526553 WDR61Q9GZS3 305 aaKnown RBP1.93□□□□□ -2.1
CD44-223ENST00000526553 EFCAB1Q9HAE3 211 aa1.93□□□□□ -2.1
CD44-223ENST00000526553 SPANXA1Q9NS26 97 aa1.93□□□□□ -2.1
CD44-223ENST00000526553 PAQR5Q9NXK6 330 aaPredicted RBP1.93□□□□□ -2.1
CD44-223ENST00000526553 HHLA3Q9XRX5 114 aa1.93□□□□□ -2.1
CD44-223ENST00000526553 NDUFAF1Q9Y375 327 aa1.93□□□□□ -2.1
CD44-223ENST00000526553 RELNP78509 3460 aa1.93□□□□□ -2.1
CD44-223ENST00000526553 AKAP9Q99996 3911 aa1.93□□□□□ -2.1
CD44-223ENST00000526553 DSCAMO60469 2012 aa1.93□□□□□ -2.1
CD44-223ENST00000526553 FBN2P35556 2912 aa1.93□□□□□ -2.1
CD44-223ENST00000526553 PKDREJQ9NTG1 2253 aa1.92□□□□□ -2.1
CD44-223ENST00000526553 SPENQ96T58 3664 aaKnown RBP1.92□□□□□ -2.1
CD44-223ENST00000526553 MDFIC2A0A1B0GVS7 189 aa1.92□□□□□ -2.1
CD44-223ENST00000526553 FUOMA2VDF0 154 aa1.92□□□□□ -2.1
CD44-223ENST00000526553 CLDN25C9JDP6 229 aa1.92□□□□□ -2.1
CD44-223ENST00000526553 E5RI56 91 aa1.92□□□□□ -2.1
CD44-223ENST00000526553 KLRC4O43908 158 aa1.92□□□□□ -2.1
CD44-223ENST00000526553 NSA2O95478 260 aaKnown RBP1.92□□□□□ -2.1
CD44-223ENST00000526553 BPGMP07738 259 aa1.92□□□□□ -2.1
CD44-223ENST00000526553 RBP1P09455 135 aa1.92□□□□□ -2.1
CD44-223ENST00000526553 TMBIM6P55061 237 aa1.92□□□□□ -2.1
CD44-223ENST00000526553 CCL20P78556 96 aa1.92□□□□□ -2.1
CD44-223ENST00000526553 MRPS10P82664 201 aaKnown RBP1.92□□□□□ -2.1
CD44-223ENST00000526553 FOXF1Q12946 379 aa1.92□□□□□ -2.1
CD44-223ENST00000526553 CDK10Q15131 360 aa1.92□□□□□ -2.1
CD44-223ENST00000526553 ZNF181Q2M3W8 571 aa1.92□□□□□ -2.1
CD44-223ENST00000526553 DEFB133Q30KQ1 61 aa1.92□□□□□ -2.1
CD44-223ENST00000526553 DEFB109BQ30KR1 87 aa1.92□□□□□ -2.1
CD44-223ENST00000526553 EIF5AL1Q6IS14 154 aaKnown RBP1.92□□□□□ -2.1
CD44-223ENST00000526553 SMIM15Q7Z3B0 74 aa1.92□□□□□ -2.1
CD44-223ENST00000526553 C8orf59Q8N0T1 100 aaPredicted RBP1.92□□□□□ -2.1
CD44-223ENST00000526553 OR6V1Q8N148 313 aa1.92□□□□□ -2.1
CD44-223ENST00000526553 DYNAPQ8N1N2 210 aa1.92□□□□□ -2.1
CD44-223ENST00000526553 ANKRD29Q8N6D5 301 aa1.92□□□□□ -2.1
CD44-223ENST00000526553 TMEM35BQ8NCS4 154 aa1.92□□□□□ -2.1
CD44-223ENST00000526553 CDC26Q8NHZ8 85 aa1.92□□□□□ -2.1
CD44-223ENST00000526553 FAM172AQ8WUF8 416 aa1.92□□□□□ -2.1
CD44-223ENST00000526553 BIN3Q9NQY0 253 aa1.92□□□□□ -2.1
CD44-223ENST00000526553 C19orf12Q9NSK7 152 aa1.92□□□□□ -2.1
CD44-223ENST00000526553 CMTM6Q9NX76 183 aa1.92□□□□□ -2.1
CD44-223ENST00000526553 TAS2R7Q9NYW3 318 aa1.92□□□□□ -2.1
CD44-223ENST00000526553 FUT9Q9Y231 359 aa1.92□□□□□ -2.1
CD44-223ENST00000526553 TIMM9Q9Y5J7 89 aa1.92□□□□□ -2.1
CD44-223ENST00000526553 TMEM56-RWDD3S4R434 201 aa1.92□□□□□ -2.1
CD44-223ENST00000526553 CNTRLQ7Z7A1 2325 aa1.92□□□□□ -2.1
CD44-223ENST00000526553 ZNF106Q9H2Y7 1883 aaKnown RBP1.92□□□□□ -2.1
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms