RNA–Protein interactions for RNA: ENST00000520286.5

LSM1-202, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best)

Gene LSM1, Length 776 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-202ENST00000520286 MUC22E2RYF6 1773 aaPredicted RBP4.6□□□□□ -1.67
LSM1-202ENST00000520286 PI4KAP42356 2102 aa4.6□□□□□ -1.67
LSM1-202ENST00000520286 CREBBPQ92793 2442 aa4.6□□□□□ -1.67
LSM1-202ENST00000520286 COL12A1Q99715 3063 aa4.59□□□□□ -1.67
LSM1-202ENST00000520286 IGHV1-69-2A0A0G2JMI3 117 aa4.59□□□□□ -1.67
LSM1-202ENST00000520286 IGHV7-4-1A0A0J9YVY3 117 aa4.59□□□□□ -1.67
LSM1-202ENST00000520286 ZNF705FA8MVS1 300 aaPredicted RBP4.59□□□□□ -1.67
LSM1-202ENST00000520286 AHSA1O95433 338 aa4.59□□□□□ -1.67
LSM1-202ENST00000520286 ZNF705DP0CH99 300 aaPredicted RBP4.59□□□□□ -1.67
LSM1-202ENST00000520286 ZNF705BP0CI00 300 aaPredicted RBP4.59□□□□□ -1.67
LSM1-202ENST00000520286 IGLC2P0DOY2 106 aa4.59□□□□□ -1.67
LSM1-202ENST00000520286 IGLC3P0DOY3 106 aa4.59□□□□□ -1.67
LSM1-202ENST00000520286 IL12BP29460 328 aa4.59□□□□□ -1.67
LSM1-202ENST00000520286 OPRK1P41145 380 aa4.59□□□□□ -1.67
LSM1-202ENST00000520286 EMP2P54851 167 aa4.59□□□□□ -1.67
LSM1-202ENST00000520286 TAS2R30P59541 319 aa4.59□□□□□ -1.67
LSM1-202ENST00000520286 RPL19P84098 196 aaKnown RBP4.59□□□□□ -1.67
LSM1-202ENST00000520286 PRDX1Q06830 199 aaKnown RBP4.59□□□□□ -1.67
LSM1-202ENST00000520286 BAXQ07812 192 aa4.59□□□□□ -1.67
LSM1-202ENST00000520286 SPTAN1Q13813 2472 aaKnown RBP4.59□□□□□ -1.67
LSM1-202ENST00000520286 OCIAD2Q56VL3 154 aa4.59□□□□□ -1.67
LSM1-202ENST00000520286 TMEM215Q68D42 235 aa4.59□□□□□ -1.67
LSM1-202ENST00000520286 GUSBP11Q6P575 273 aa4.59□□□□□ -1.67
LSM1-202ENST00000520286 TOMM20LQ6UXN7 152 aa4.59□□□□□ -1.67
LSM1-202ENST00000520286 C1orf174Q8IYL3 243 aa4.59□□□□□ -1.67
LSM1-202ENST00000520286 ZFP62Q8NB50 900 aaPredicted RBP4.59□□□□□ -1.67
LSM1-202ENST00000520286 NT5CQ8TCD5 201 aa4.59□□□□□ -1.67
LSM1-202ENST00000520286 ZNF721Q8TF20 911 aa4.59□□□□□ -1.67
LSM1-202ENST00000520286 NECAP2Q9NVZ3 263 aa4.59□□□□□ -1.67
LSM1-202ENST00000520286 UQCR10Q9UDW1 63 aa4.59□□□□□ -1.67
LSM1-202ENST00000520286 LAMTOR2Q9Y2Q5 125 aa4.59□□□□□ -1.67
LSM1-202ENST00000520286 PXMP4Q9Y6I8 212 aa4.59□□□□□ -1.67
LSM1-202ENST00000520286 ATMQ13315 3056 aa4.59□□□□□ -1.68
LSM1-202ENST00000520286 SCN3AQ9NY46 2000 aa4.58□□□□□ -1.68
LSM1-202ENST00000520286 IGHV2-26A0A0B4J1V2 119 aa4.58□□□□□ -1.68
LSM1-202ENST00000520286 A0A1B0GV50 99 aa4.58□□□□□ -1.68
LSM1-202ENST00000520286 TMEM250H0YL14 139 aa4.58□□□□□ -1.68
LSM1-202ENST00000520286 H7BYZ3 331 aa4.58□□□□□ -1.68
LSM1-202ENST00000520286 NUPR1O60356 82 aa4.58□□□□□ -1.68
LSM1-202ENST00000520286 CDS2O95674 445 aa4.58□□□□□ -1.68
LSM1-202ENST00000520286 IGHMP01871 453 aa4.58□□□□□ -1.68
LSM1-202ENST00000520286 REG1AP05451 166 aa4.58□□□□□ -1.68
LSM1-202ENST00000520286 CD99P14209 185 aa4.58□□□□□ -1.68
LSM1-202ENST00000520286 CPMP14384 443 aa4.58□□□□□ -1.68
LSM1-202ENST00000520286 TPPP2P59282 170 aa4.58□□□□□ -1.68
LSM1-202ENST00000520286 YPEL3P61236 119 aaPredicted RBP4.58□□□□□ -1.68
LSM1-202ENST00000520286 BSXQ3C1V8 233 aa4.58□□□□□ -1.68
LSM1-202ENST00000520286 TDRG1Q3Y452 100 aa4.58□□□□□ -1.68
LSM1-202ENST00000520286 TTC32Q5I0X7 151 aa4.58□□□□□ -1.68
LSM1-202ENST00000520286 LCE1EQ5T753 118 aa4.58□□□□□ -1.68
LSM1-202ENST00000520286 ZCCHC24Q8N2G6 241 aaKnown RBP4.58□□□□□ -1.68
LSM1-202ENST00000520286 OR2T10Q8NGZ9 312 aa4.58□□□□□ -1.68
LSM1-202ENST00000520286 TMEM56Q96MV1 263 aa4.58□□□□□ -1.68
LSM1-202ENST00000520286 CIB3Q96Q77 187 aaPredicted RBP4.58□□□□□ -1.68
LSM1-202ENST00000520286 TIMM29Q9BSF4 260 aa4.58□□□□□ -1.68
LSM1-202ENST00000520286 OR51I2Q9H344 312 aa4.58□□□□□ -1.68
LSM1-202ENST00000520286 CST9LQ9H4G1 147 aa4.58□□□□□ -1.68
LSM1-202ENST00000520286 NAA60Q9H7X0 242 aa4.58□□□□□ -1.68
LSM1-202ENST00000520286 PLEKHF2Q9H8W4 249 aa4.58□□□□□ -1.68
LSM1-202ENST00000520286 RFNGQ9Y644 331 aa4.58□□□□□ -1.68
LSM1-202ENST00000520286 TMEM56-RWDD3S4R434 201 aa4.58□□□□□ -1.68
LSM1-202ENST00000520286 AHCTF1Q8WYP5 2266 aa4.58□□□□□ -1.68
LSM1-202ENST00000520286 USP9YO00507 2555 aaPredicted RBP4.58□□□□□ -1.68
LSM1-202ENST00000520286 TRAV9-1A0A075B6T8 112 aa4.57□□□□□ -1.68
LSM1-202ENST00000520286 H3BSH0 61 aa4.57□□□□□ -1.68
LSM1-202ENST00000520286 HYPMO75409 117 aa4.57□□□□□ -1.68
LSM1-202ENST00000520286 IGKV1D-16P01601 117 aa4.57□□□□□ -1.68
LSM1-202ENST00000520286 IL3RAP26951 378 aa4.57□□□□□ -1.68
LSM1-202ENST00000520286 CAPZBP47756 277 aa4.57□□□□□ -1.68
LSM1-202ENST00000520286 ERVS71-1P61550 626 aa4.57□□□□□ -1.68
LSM1-202ENST00000520286 RPL18Q07020 188 aaKnown RBP4.57□□□□□ -1.68
LSM1-202ENST00000520286 SRSF6Q13247 344 aaKnown RBP4.57□□□□□ -1.68
LSM1-202ENST00000520286 GUSBP1Q15486 140 aa4.57□□□□□ -1.68
LSM1-202ENST00000520286 MMDQ15546 238 aa4.57□□□□□ -1.68
LSM1-202ENST00000520286 BATFQ16520 125 aa4.57□□□□□ -1.68
LSM1-202ENST00000520286 MPV17LQ2QL34 196 aa4.57□□□□□ -1.68
LSM1-202ENST00000520286 OR5AS1Q8N127 324 aa4.57□□□□□ -1.68
LSM1-202ENST00000520286 C2orf73Q8N5S3 287 aaPredicted RBP4.57□□□□□ -1.68
LSM1-202ENST00000520286 OR5L1Q8NGL2 311 aa4.57□□□□□ -1.68
LSM1-202ENST00000520286 OR1L1Q8NH94 360 aa4.57□□□□□ -1.68
LSM1-202ENST00000520286 CMTM2Q8TAZ6 248 aa4.57□□□□□ -1.68
LSM1-202ENST00000520286 LINC01560Q8TB33 94 aa4.57□□□□□ -1.68
LSM1-202ENST00000520286 COX14Q96I36 57 aa4.57□□□□□ -1.68
LSM1-202ENST00000520286 PSMG3Q9BT73 122 aaPredicted RBP4.57□□□□□ -1.68
LSM1-202ENST00000520286 MANBALQ9NQG1 85 aa4.57□□□□□ -1.68
LSM1-202ENST00000520286 SMPXQ9UHP9 88 aa4.57□□□□□ -1.68
LSM1-202ENST00000520286 U3KQA8 63 aa4.57□□□□□ -1.68
LSM1-202ENST00000520286 DOPEY1Q5JWR5 2465 aa4.57□□□□□ -1.68
LSM1-202ENST00000520286 DOPEY2Q9Y3R5 2298 aa4.57□□□□□ -1.68
LSM1-202ENST00000520286 CHD3Q12873 2000 aaKnown RBP4.56□□□□□ -1.68
LSM1-202ENST00000520286 DUXBA0A1W2PPF3 345 aa4.56□□□□□ -1.68
LSM1-202ENST00000520286 IGLC7A0M8Q6 106 aa4.56□□□□□ -1.68
LSM1-202ENST00000520286 FAM24AA6NFZ4 105 aa4.56□□□□□ -1.68
LSM1-202ENST00000520286 H7C1C5 153 aa4.56□□□□□ -1.68
LSM1-202ENST00000520286 NDUFS5O43920 106 aa4.56□□□□□ -1.68
LSM1-202ENST00000520286 TNFSF15O95150 251 aa4.56□□□□□ -1.68
LSM1-202ENST00000520286 IFNA1P01562 189 aa4.56□□□□□ -1.68
LSM1-202ENST00000520286 IGLV2-8P01709 118 aa4.56□□□□□ -1.68
LSM1-202ENST00000520286 TTRP02766 147 aa4.56□□□□□ -1.68
LSM1-202ENST00000520286 SCGB1A1P11684 91 aa4.56□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms