RNA–Protein interactions for RNA: ENST00000513024.5

LIMCH1-218, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,129 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-218ENST00000513024 PFN1P07737 140 aaKnown RBP7.19□□□□□ -1.26
LIMCH1-218ENST00000513024 PYYP10082 97 aa7.19□□□□□ -1.26
LIMCH1-218ENST00000513024 HLA-DMBP28068 263 aa7.19□□□□□ -1.26
LIMCH1-218ENST00000513024 CRIPAKQ8N1N5 446 aa7.19□□□□□ -1.26
LIMCH1-218ENST00000513024 A0A1W2PPI3 338 aa7.19□□□□□ -1.26
LIMCH1-218ENST00000513024 SIVA1O15304 175 aa7.19□□□□□ -1.26
LIMCH1-218ENST00000513024 EEF1AKMT3Q96AZ1 226 aa7.19□□□□□ -1.26
LIMCH1-218ENST00000513024 PNRC2Q9NPJ4 139 aaKnown RBP7.19□□□□□ -1.26
LIMCH1-218ENST00000513024 RS1O15537 224 aa7.18□□□□□ -1.26
LIMCH1-218ENST00000513024 RFPL3SP0C7P2 107 aa7.18□□□□□ -1.26
LIMCH1-218ENST00000513024 ATP5G2Q06055 141 aa7.18□□□□□ -1.26
LIMCH1-218ENST00000513024 KLRD1Q13241 179 aa7.18□□□□□ -1.26
LIMCH1-218ENST00000513024 TIMM21Q9BVV7 248 aa7.18□□□□□ -1.26
LIMCH1-218ENST00000513024 TGFBR3LH3BV60 316 aa7.18□□□□□ -1.26
LIMCH1-218ENST00000513024 ACP7Q6ZNF0 438 aa7.18□□□□□ -1.26
LIMCH1-218ENST00000513024 C18orf32Q8TCD1 76 aa7.18□□□□□ -1.26
LIMCH1-218ENST00000513024 B4DSR2 109 aa7.18□□□□□ -1.26
LIMCH1-218ENST00000513024 LILRA1O75019 489 aa7.18□□□□□ -1.26
LIMCH1-218ENST00000513024 NPYP01303 97 aa7.18□□□□□ -1.26
LIMCH1-218ENST00000513024 LY6EQ16553 131 aa7.18□□□□□ -1.26
LIMCH1-218ENST00000513024 LINC00114Q6XXX2 140 aa7.18□□□□□ -1.26
LIMCH1-218ENST00000513024 Q6ZVH6 145 aa7.18□□□□□ -1.26
LIMCH1-218ENST00000513024 SPTSSBQ8NFR3 76 aa7.18□□□□□ -1.26
LIMCH1-218ENST00000513024 SCARF2Q96GP6 870 aaPredicted RBP7.18□□□□□ -1.26
LIMCH1-218ENST00000513024 FREM3P0C091 2139 aa7.18□□□□□ -1.26
LIMCH1-218ENST00000513024 EGR2P11161 476 aaPredicted RBP7.18□□□□□ -1.26
LIMCH1-218ENST00000513024 DAD1P61803 113 aa7.18□□□□□ -1.26
LIMCH1-218ENST00000513024 PRIMA1Q86XR5 153 aa7.18□□□□□ -1.26
LIMCH1-218ENST00000513024 CEND1Q8N111 149 aa7.18□□□□□ -1.26
LIMCH1-218ENST00000513024 RIF1Q5UIP0 2472 aaKnown RBP7.18□□□□□ -1.26
LIMCH1-218ENST00000513024 CACNA1BQ00975 2339 aa7.18□□□□□ -1.26
LIMCH1-218ENST00000513024 KIR2DL5BA0A0G2JN68 375 aa7.17□□□□□ -1.26
LIMCH1-218ENST00000513024 KIR2DL5BA0A0G2JPC4 375 aa7.17□□□□□ -1.26
LIMCH1-218ENST00000513024 TIAF1O95411 115 aa7.17□□□□□ -1.26
LIMCH1-218ENST00000513024 EFEMP2O95967 443 aa7.17□□□□□ -1.26
LIMCH1-218ENST00000513024 CD7P09564 240 aa7.17□□□□□ -1.26
LIMCH1-218ENST00000513024 RNASE4P34096 147 aaKnown RBP7.17□□□□□ -1.26
LIMCH1-218ENST00000513024 KIR2DL5AQ8N109 375 aa7.17□□□□□ -1.26
LIMCH1-218ENST00000513024 RPP25LQ8N5L8 163 aaKnown RBP7.17□□□□□ -1.26
LIMCH1-218ENST00000513024 FAM216BQ8N7L0 139 aa7.17□□□□□ -1.26
LIMCH1-218ENST00000513024 SLC50A1Q9BRV3 221 aa7.17□□□□□ -1.26
LIMCH1-218ENST00000513024 A0A1B0GUS0 222 aa7.17□□□□□ -1.26
LIMCH1-218ENST00000513024 DUX3Q96PT4 197 aa7.17□□□□□ -1.26
LIMCH1-218ENST00000513024 ZNF319Q9P2F9 582 aa7.17□□□□□ -1.26
LIMCH1-218ENST00000513024 SHANK1Q9Y566 2161 aa7.17□□□□□ -1.26
LIMCH1-218ENST00000513024 TP53BP1Q12888 1972 aaPredicted RBP7.17□□□□□ -1.26
LIMCH1-218ENST00000513024 A0A0A6YYD4 124 aa7.17□□□□□ -1.26
LIMCH1-218ENST00000513024 TCRBV4S1A1TA0A5B7 111 aa7.17□□□□□ -1.26
LIMCH1-218ENST00000513024 ADARB2-AS1A8MUL3 147 aa7.17□□□□□ -1.26
LIMCH1-218ENST00000513024 COX6A1P12074 109 aa7.17□□□□□ -1.26
LIMCH1-218ENST00000513024 SCN8AQ9UQD0 1980 aa7.17□□□□□ -1.26
LIMCH1-218ENST00000513024 FAM240AA0A1B0GVK7 77 aa7.17□□□□□ -1.26
LIMCH1-218ENST00000513024 K7ENP7 123 aa7.17□□□□□ -1.26
LIMCH1-218ENST00000513024 IGHG3P01860 377 aa7.17□□□□□ -1.26
LIMCH1-218ENST00000513024 SUPT4H1P63272 117 aaKnown RBP7.17□□□□□ -1.26
LIMCH1-218ENST00000513024 ATP1A1-AS1Q5TC04 95 aa7.17□□□□□ -1.26
LIMCH1-218ENST00000513024 BAALCQ8WXS3 180 aa7.17□□□□□ -1.26
LIMCH1-218ENST00000513024 REPIN1Q9BWE0 567 aaKnown RBP7.17□□□□□ -1.26
LIMCH1-218ENST00000513024 SLC25A39Q9BZJ4 359 aaPredicted RBP7.17□□□□□ -1.26
LIMCH1-218ENST00000513024 PKDREJQ9NTG1 2253 aa7.17□□□□□ -1.26
LIMCH1-218ENST00000513024 J3QRE1 110 aa7.16□□□□□ -1.26
LIMCH1-218ENST00000513024 VCYO14598 125 aa7.16□□□□□ -1.26
LIMCH1-218ENST00000513024 C12orf74Q32Q52 190 aa7.16□□□□□ -1.26
LIMCH1-218ENST00000513024 LYZL1Q6UWQ5 148 aa7.16□□□□□ -1.26
LIMCH1-218ENST00000513024 SIGLEC8Q9NYZ4 499 aa7.16□□□□□ -1.26
LIMCH1-218ENST00000513024 PLXNA4Q9HCM2 1894 aa7.16□□□□□ -1.26
LIMCH1-218ENST00000513024 KIAA2026Q5HYC2 2103 aa7.16□□□□□ -1.26
LIMCH1-218ENST00000513024 C22orf46C9J442 243 aa7.16□□□□□ -1.26
LIMCH1-218ENST00000513024 SRSF2Q01130 221 aaKnown RBP7.16□□□□□ -1.26
LIMCH1-218ENST00000513024 PRSS57Q6UWY2 283 aa7.16□□□□□ -1.26
LIMCH1-218ENST00000513024 LY6G5BQ8NDX9 201 aa7.16□□□□□ -1.26
LIMCH1-218ENST00000513024 RPUSD1Q9UJJ7 312 aaKnown RBP7.16□□□□□ -1.26
LIMCH1-218ENST00000513024 RNF183Q96D59 192 aa7.16□□□□□ -1.26
LIMCH1-218ENST00000513024 C21orf62Q9NYP8 219 aa7.16□□□□□ -1.26
LIMCH1-218ENST00000513024 FBLN5Q9UBX5 448 aa7.16□□□□□ -1.26
LIMCH1-218ENST00000513024 IGHV3OR16-10A0A075B7F0 116 aa7.16□□□□□ -1.26
LIMCH1-218ENST00000513024 G3V4G9 280 aa7.16□□□□□ -1.26
LIMCH1-218ENST00000513024 K7ERJ3 54 aa7.16□□□□□ -1.26
LIMCH1-218ENST00000513024 EFNA4P52798 201 aa7.16□□□□□ -1.26
LIMCH1-218ENST00000513024 CD69Q07108 199 aa7.16□□□□□ -1.26
LIMCH1-218ENST00000513024 PSG7Q13046 419 aa7.16□□□□□ -1.26
LIMCH1-218ENST00000513024 LGALS9BQ3B8N2 356 aa7.16□□□□□ -1.26
LIMCH1-218ENST00000513024 LGALS9CQ6DKI2 356 aa7.16□□□□□ -1.26
LIMCH1-218ENST00000513024 WFDC9Q8NEX5 89 aa7.16□□□□□ -1.26
LIMCH1-218ENST00000513024 C20orf173Q96LM9 149 aa7.16□□□□□ -1.26
LIMCH1-218ENST00000513024 F6UB75 175 aa7.15□□□□□ -1.26
LIMCH1-218ENST00000513024 HGFACQ04756 655 aa7.15□□□□□ -1.26
LIMCH1-218ENST00000513024 Q6ZT83 130 aa7.15□□□□□ -1.26
LIMCH1-218ENST00000513024 TEN1Q86WV5 123 aa7.15□□□□□ -1.26
LIMCH1-218ENST00000513024 ARFGEF3Q5TH69 2177 aa7.15□□□□□ -1.26
LIMCH1-218ENST00000513024 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP7.15□□□□□ -1.26
LIMCH1-218ENST00000513024 CLPSL1A2RUU4 121 aa7.15□□□□□ -1.26
LIMCH1-218ENST00000513024 TFF1P04155 84 aa7.15□□□□□ -1.26
LIMCH1-218ENST00000513024 FAM90A9PA6NNJ1 464 aa7.15□□□□□ -1.26
LIMCH1-218ENST00000513024 TCRAP04437 139 aa7.15□□□□□ -1.26
LIMCH1-218ENST00000513024 DTX2Q86UW9 622 aa7.15□□□□□ -1.26
LIMCH1-218ENST00000513024 WBP1Q96G27 269 aa7.15□□□□□ -1.26
LIMCH1-218ENST00000513024 CHCHD2Q9Y6H1 151 aaPredicted RBP7.15□□□□□ -1.26
LIMCH1-218ENST00000513024 ANAPC1Q9H1A4 1944 aa7.15□□□□□ -1.27
LIMCH1-218ENST00000513024 ACACAQ13085 2346 aa7.15□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms