RNA–Protein interactions for RNA: ENST00000512151.5

NUP54-211, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,385 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-211ENST00000512151 SUB1P53999 127 aaKnown RBP eCLIP6.44□□□□□ -1.38
NUP54-211ENST00000512151 VAMP2P63027 116 aa6.44□□□□□ -1.38
NUP54-211ENST00000512151 SERTAD4-AS1Q5TG53 156 aa6.44□□□□□ -1.38
NUP54-211ENST00000512151 MORN3Q6PF18 240 aaPredicted RBP6.44□□□□□ -1.38
NUP54-211ENST00000512151 TMEM252Q8N6L7 170 aa6.44□□□□□ -1.38
NUP54-211ENST00000512151 CSNK1G2-AS1Q8NCQ2 148 aa6.44□□□□□ -1.38
NUP54-211ENST00000512151 OR1S2Q8NGQ3 325 aa6.44□□□□□ -1.38
NUP54-211ENST00000512151 ZNRF2Q8NHG8 242 aa6.44□□□□□ -1.38
NUP54-211ENST00000512151 PINX1Q96BK5 328 aaKnown RBP6.44□□□□□ -1.38
NUP54-211ENST00000512151 LYRM2Q9NU23 88 aaPredicted RBP6.44□□□□□ -1.38
NUP54-211ENST00000512151 STRAPQ9Y3F4 350 aaKnown RBP6.44□□□□□ -1.38
NUP54-211ENST00000512151 IGHV3-49A0A0A0MS15 119 aa6.44□□□□□ -1.38
NUP54-211ENST00000512151 BORCS7-ASMTA0A0B4J1R7 106 aa6.44□□□□□ -1.38
NUP54-211ENST00000512151 TEX46H3BTG2 121 aa6.44□□□□□ -1.38
NUP54-211ENST00000512151 TGOLN2O43493 480 aa6.44□□□□□ -1.38
NUP54-211ENST00000512151 SEC11BP0C7V7 166 aa6.44□□□□□ -1.38
NUP54-211ENST00000512151 CMC4P56277 68 aaPredicted RBP6.44□□□□□ -1.38
NUP54-211ENST00000512151 DEFB131AP59861 70 aa6.44□□□□□ -1.38
NUP54-211ENST00000512151 BLOC1S1P78537 153 aa6.44□□□□□ -1.38
NUP54-211ENST00000512151 NHLH2Q02577 135 aa6.44□□□□□ -1.38
NUP54-211ENST00000512151 RNASEH2CQ8TDP1 164 aaKnown RBP6.44□□□□□ -1.38
NUP54-211ENST00000512151 FAM210BQ96KR6 192 aa6.44□□□□□ -1.38
NUP54-211ENST00000512151 GINS3Q9BRX5 216 aa6.44□□□□□ -1.38
NUP54-211ENST00000512151 C20orf24Q9BUV8 137 aa6.44□□□□□ -1.38
NUP54-211ENST00000512151 WFDC1Q9HC57 220 aa6.44□□□□□ -1.38
NUP54-211ENST00000512151 SMPXQ9UHP9 88 aa6.44□□□□□ -1.38
NUP54-211ENST00000512151 LRP1Q07954 4544 aaKnown RBP6.43□□□□□ -1.38
NUP54-211ENST00000512151 KRTAP29-1A8MX34 341 aaPredicted RBP6.43□□□□□ -1.38
NUP54-211ENST00000512151 CHEK1O14757 476 aa6.43□□□□□ -1.38
NUP54-211ENST00000512151 CST7O76096 145 aa6.43□□□□□ -1.38
NUP54-211ENST00000512151 OPRK1P41145 380 aa6.43□□□□□ -1.38
NUP54-211ENST00000512151 CAV2P51636 162 aa6.43□□□□□ -1.38
NUP54-211ENST00000512151 ATP5IP56385 69 aaPredicted RBP6.43□□□□□ -1.38
NUP54-211ENST00000512151 RAB11AP62491 216 aa6.43□□□□□ -1.38
NUP54-211ENST00000512151 RPP30P78346 268 aaKnown RBP6.43□□□□□ -1.38
NUP54-211ENST00000512151 FAM90A2PQ658T7 463 aa6.43□□□□□ -1.38
NUP54-211ENST00000512151 TRPT1Q86TN4 253 aaKnown RBP6.43□□□□□ -1.38
NUP54-211ENST00000512151 LYPD6BQ8NI32 183 aa6.43□□□□□ -1.38
NUP54-211ENST00000512151 VN1R17PQ8TDU5 208 aa6.43□□□□□ -1.38
NUP54-211ENST00000512151 C17orf77Q96MU5 243 aa6.43□□□□□ -1.38
NUP54-211ENST00000512151 RHPN1-AS1Q9BWJ2 59 aa6.43□□□□□ -1.38
NUP54-211ENST00000512151 KRTAP4-11Q9BYQ6 195 aa6.43□□□□□ -1.38
NUP54-211ENST00000512151 KRTAP1-5Q9BYS1 174 aa6.43□□□□□ -1.38
NUP54-211ENST00000512151 SLC25A31Q9H0C2 315 aa6.43□□□□□ -1.38
NUP54-211ENST00000512151 THYN1Q9P016 225 aa6.43□□□□□ -1.38
NUP54-211ENST00000512151 PLA2G2DQ9UNK4 145 aa6.43□□□□□ -1.38
NUP54-211ENST00000512151 SCO2A0A1W2PP80 73 aa6.42□□□□□ -1.38
NUP54-211ENST00000512151 OR2T8A6NH00 312 aa6.42□□□□□ -1.38
NUP54-211ENST00000512151 A6NJY4 79 aa6.42□□□□□ -1.38
NUP54-211ENST00000512151 K7EMT4 169 aa6.42□□□□□ -1.38
NUP54-211ENST00000512151 CORTO00230 105 aa6.42□□□□□ -1.38
NUP54-211ENST00000512151 CYB5BO43169 146 aa6.42□□□□□ -1.38
NUP54-211ENST00000512151 SPP1P10451 314 aa6.42□□□□□ -1.38
NUP54-211ENST00000512151 GPX4P36969 197 aaPredicted RBP6.42□□□□□ -1.38
NUP54-211ENST00000512151 SULT1A1P50225 295 aa6.42□□□□□ -1.38
NUP54-211ENST00000512151 FAM3BP58499 235 aaPredicted RBP6.42□□□□□ -1.38
NUP54-211ENST00000512151 BAXQ07812 192 aa6.42□□□□□ -1.38
NUP54-211ENST00000512151 GAMTQ14353 236 aa6.42□□□□□ -1.38
NUP54-211ENST00000512151 PXDC1Q5TGL8 231 aa6.42□□□□□ -1.38
NUP54-211ENST00000512151 OR8G2PQ6IF36 304 aa6.42□□□□□ -1.38
NUP54-211ENST00000512151 TMEM88Q6PEY1 159 aa6.42□□□□□ -1.38
NUP54-211ENST00000512151 SYT8Q8NBV8 401 aa6.42□□□□□ -1.38
NUP54-211ENST00000512151 BPIFCQ8NFQ6 507 aa6.42□□□□□ -1.38
NUP54-211ENST00000512151 SMIM3Q9BZL3 60 aa6.42□□□□□ -1.38
NUP54-211ENST00000512151 C21orf62Q9NYP8 219 aa6.42□□□□□ -1.38
NUP54-211ENST00000512151 IGKV1D-37A0A075B6S9 117 aa6.41□□□□□ -1.38
NUP54-211ENST00000512151 IGKV1OR2-108A0A075B7D4 117 aa6.41□□□□□ -1.38
NUP54-211ENST00000512151 IGHV3OR16-13A0A075B7E8 117 aa6.41□□□□□ -1.38
NUP54-211ENST00000512151 IGHV3-74A0A0B4J1X5 117 aa6.41□□□□□ -1.38
NUP54-211ENST00000512151 IGHV7-4-1A0A0J9YVY3 117 aa6.41□□□□□ -1.38
NUP54-211ENST00000512151 TMEM218A2RU14 115 aa6.41□□□□□ -1.38
NUP54-211ENST00000512151 KNCNA6PVL3 124 aa6.41□□□□□ -1.38
NUP54-211ENST00000512151 NDUFA4O00483 81 aa6.41□□□□□ -1.38
NUP54-211ENST00000512151 SCO1O75880 301 aa6.41□□□□□ -1.38
NUP54-211ENST00000512151 CTSGP08311 255 aa6.41□□□□□ -1.38
NUP54-211ENST00000512151 HTN3P15516 51 aa6.41□□□□□ -1.38
NUP54-211ENST00000512151 RAB5CP51148 216 aa6.41□□□□□ -1.38
NUP54-211ENST00000512151 MFAP4P55083 255 aa6.41□□□□□ -1.38
NUP54-211ENST00000512151 KRTAP10-1P60331 282 aa6.41□□□□□ -1.38
NUP54-211ENST00000512151 HAMPP81172 84 aa6.41□□□□□ -1.38
NUP54-211ENST00000512151 SLC38A11Q08AI6 406 aa6.41□□□□□ -1.38
NUP54-211ENST00000512151 ZNF266Q14584 549 aa6.41□□□□□ -1.38
NUP54-211ENST00000512151 C10orf91Q5T1B1 145 aa6.41□□□□□ -1.38
NUP54-211ENST00000512151 STHQ8IWL8 128 aa6.41□□□□□ -1.38
NUP54-211ENST00000512151 LILRB2Q8N423 598 aa6.41□□□□□ -1.38
NUP54-211ENST00000512151 OR10P1Q8NGE3 313 aa6.41□□□□□ -1.38
NUP54-211ENST00000512151 OR4X1Q8NH49 305 aa6.41□□□□□ -1.38
NUP54-211ENST00000512151 SUN5Q8TC36 379 aa6.41□□□□□ -1.38
NUP54-211ENST00000512151 NPIPB3Q92617 1050 aa6.41□□□□□ -1.38
NUP54-211ENST00000512151 CLN5O75503 358 aa6.4□□□□□ -1.39
NUP54-211ENST00000512151 BTF3P20290 206 aaKnown RBP6.4□□□□□ -1.39
NUP54-211ENST00000512151 RND2P52198 227 aa6.4□□□□□ -1.39
NUP54-211ENST00000512151 DLK1P80370 383 aa6.4□□□□□ -1.39
NUP54-211ENST00000512151 VWC2Q2TAL6 325 aa6.4□□□□□ -1.39
NUP54-211ENST00000512151 TIGITQ495A1 244 aa6.4□□□□□ -1.39
NUP54-211ENST00000512151 Q56UQ5 140 aa6.4□□□□□ -1.39
NUP54-211ENST00000512151 TMEM41BQ5BJD5 291 aa6.4□□□□□ -1.39
NUP54-211ENST00000512151 TMEM182Q6ZP80 229 aaPredicted RBP6.4□□□□□ -1.39
NUP54-211ENST00000512151 TMEM116Q8NCL8 245 aa6.4□□□□□ -1.39
NUP54-211ENST00000512151 OR5C1Q8NGR4 320 aa6.4□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms