RNA–Protein interactions for RNA: ENST00000496447.5

PTPRF-215, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 5,887 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-215ENST00000496447 MED12Q93074 2177 aa10.68□□□□□ -0.7
PTPRF-215ENST00000496447 Q0VG73 95 aa10.67□□□□□ -0.7
PTPRF-215ENST00000496447 CR1LQ2VPA4 569 aa10.67□□□□□ -0.7
PTPRF-215ENST00000496447 RSPO3Q9BXY4 272 aaPredicted RBP10.67□□□□□ -0.7
PTPRF-215ENST00000496447 GBF1Q92538 1859 aa10.67□□□□□ -0.7
PTPRF-215ENST00000496447 A0A087X0K7 114 aa10.67□□□□□ -0.7
PTPRF-215ENST00000496447 TMEM95Q3KNT9 176 aa10.67□□□□□ -0.7
PTPRF-215ENST00000496447 ADAMTSL5Q6ZMM2 481 aa10.67□□□□□ -0.7
PTPRF-215ENST00000496447 SMPXQ9UHP9 88 aa10.67□□□□□ -0.7
PTPRF-215ENST00000496447 ZNF815PA8K554 130 aa10.67□□□□□ -0.7
PTPRF-215ENST00000496447 C9JQL5 133 aa10.67□□□□□ -0.7
PTPRF-215ENST00000496447 TOMM40O96008 361 aa10.67□□□□□ -0.7
PTPRF-215ENST00000496447 RNF144BQ7Z419 303 aa10.67□□□□□ -0.7
PTPRF-215ENST00000496447 SPAG8Q99932 426 aaPredicted RBP10.67□□□□□ -0.7
PTPRF-215ENST00000496447 ZNF876PQ49A33 203 aa10.67□□□□□ -0.7
PTPRF-215ENST00000496447 TCRAP04437 139 aa10.66□□□□□ -0.7
PTPRF-215ENST00000496447 NMSQ5H8A3 153 aa10.66□□□□□ -0.7
PTPRF-215ENST00000496447 TMEM86BQ8N661 226 aa10.66□□□□□ -0.7
PTPRF-215ENST00000496447 GPR179Q6PRD1 2367 aa10.66□□□□□ -0.7
PTPRF-215ENST00000496447 FAM90A2PQ658T7 463 aa10.66□□□□□ -0.7
PTPRF-215ENST00000496447 LCN12Q6JVE5 192 aa10.66□□□□□ -0.7
PTPRF-215ENST00000496447 CEACAM8P31997 349 aaPredicted RBP10.66□□□□□ -0.7
PTPRF-215ENST00000496447 LINC00205P59089 165 aa10.66□□□□□ -0.7
PTPRF-215ENST00000496447 FNDC1Q4ZHG4 1894 aaPredicted RBP10.66□□□□□ -0.7
PTPRF-215ENST00000496447 IGKCP01834 107 aa10.66□□□□□ -0.7
PTPRF-215ENST00000496447 IGFL4Q6B9Z1 124 aa10.66□□□□□ -0.7
PTPRF-215ENST00000496447 BCL6BQ8N143 479 aaPredicted RBP10.66□□□□□ -0.7
PTPRF-215ENST00000496447 Q8TAT8 98 aa10.66□□□□□ -0.7
PTPRF-215ENST00000496447 NAA38Q9BRA0 125 aaKnown RBP10.66□□□□□ -0.7
PTPRF-215ENST00000496447 LINC00158P58513 81 aa10.65□□□□□ -0.7
PTPRF-215ENST00000496447 ZNF581Q9P0T4 197 aa10.65□□□□□ -0.7
PTPRF-215ENST00000496447 A0A0U1RRA0 63 aa10.65□□□□□ -0.7
PTPRF-215ENST00000496447 IGLC2P0DOY2 106 aa10.65□□□□□ -0.7
PTPRF-215ENST00000496447 IGLC3P0DOY3 106 aa10.65□□□□□ -0.7
PTPRF-215ENST00000496447 DLX4Q92988 240 aaPredicted RBP10.65□□□□□ -0.7
PTPRF-215ENST00000496447 DIDO1Q9BTC0 2240 aaKnown RBP10.65□□□□□ -0.7
PTPRF-215ENST00000496447 VWA8A3KMH1 1905 aa10.65□□□□□ -0.7
PTPRF-215ENST00000496447 DOPEY2Q9Y3R5 2298 aa10.65□□□□□ -0.7
PTPRF-215ENST00000496447 IGHV2-70DA0A0C4DH43 119 aa10.65□□□□□ -0.7
PTPRF-215ENST00000496447 hDV102S1A0JD36 115 aa10.65□□□□□ -0.7
PTPRF-215ENST00000496447 SYS1-DBNDD2H3BUS1 97 aa10.65□□□□□ -0.7
PTPRF-215ENST00000496447 TMEM14EPQ6UXP3 125 aa10.65□□□□□ -0.7
PTPRF-215ENST00000496447 SRSF8Q9BRL6 282 aaKnown RBP10.65□□□□□ -0.7
PTPRF-215ENST00000496447 ANK1P16157 1881 aa10.65□□□□□ -0.7
PTPRF-215ENST00000496447 LINC01619G3V211 115 aa10.65□□□□□ -0.71
PTPRF-215ENST00000496447 ATP6V0E1O15342 81 aa10.65□□□□□ -0.71
PTPRF-215ENST00000496447 IGKV1-16P04430 117 aa10.65□□□□□ -0.71
PTPRF-215ENST00000496447 IGHV3-64A0A075B6Q5 118 aa10.64□□□□□ -0.71
PTPRF-215ENST00000496447 DEFB130BP0DP73 79 aa10.64□□□□□ -0.71
PTPRF-215ENST00000496447 DEFB130AP0DP74 79 aa10.64□□□□□ -0.71
PTPRF-215ENST00000496447 GUSBP1Q15486 140 aa10.64□□□□□ -0.71
PTPRF-215ENST00000496447 IFI27L1Q96BM0 104 aa10.64□□□□□ -0.71
PTPRF-215ENST00000496447 ABCA4P78363 2273 aa10.64□□□□□ -0.71
PTPRF-215ENST00000496447 TCF20Q9UGU0 1960 aaKnown RBP10.64□□□□□ -0.71
PTPRF-215ENST00000496447 TRAV2A0A0B4J234 112 aa10.64□□□□□ -0.71
PTPRF-215ENST00000496447 LINC01549A6NIU2 74 aa10.64□□□□□ -0.71
PTPRF-215ENST00000496447 DEFB131AP59861 70 aa10.64□□□□□ -0.71
PTPRF-215ENST00000496447 Q8TCH9 128 aa10.64□□□□□ -0.71
PTPRF-215ENST00000496447 TMEM238C9JI98 176 aa10.64□□□□□ -0.71
PTPRF-215ENST00000496447 LAGE3Q14657 143 aa10.64□□□□□ -0.71
PTPRF-215ENST00000496447 SH2D1AO60880 128 aa10.64□□□□□ -0.71
PTPRF-215ENST00000496447 PLNP26678 52 aa10.64□□□□□ -0.71
PTPRF-215ENST00000496447 S100A7L2Q5SY68 101 aa10.64□□□□□ -0.71
PTPRF-215ENST00000496447 LYZL1Q6UWQ5 148 aa10.64□□□□□ -0.71
PTPRF-215ENST00000496447 PI4KAP42356 2102 aa10.63□□□□□ -0.71
PTPRF-215ENST00000496447 NCR2O95944 276 aa10.63□□□□□ -0.71
PTPRF-215ENST00000496447 PSG3Q16557 428 aa10.63□□□□□ -0.71
PTPRF-215ENST00000496447 ZNF562Q6V9R5 426 aa10.63□□□□□ -0.71
PTPRF-215ENST00000496447 PIP4P1Q86T03 277 aa10.63□□□□□ -0.71
PTPRF-215ENST00000496447 K7EP13 123 aa10.63□□□□□ -0.71
PTPRF-215ENST00000496447 PFN1P07737 140 aaKnown RBP10.63□□□□□ -0.71
PTPRF-215ENST00000496447 RNASE2P10153 161 aaKnown RBP10.63□□□□□ -0.71
PTPRF-215ENST00000496447 NTF4P34130 210 aa10.63□□□□□ -0.71
PTPRF-215ENST00000496447 QRFPP83859 136 aa10.63□□□□□ -0.71
PTPRF-215ENST00000496447 FAM110DQ8TAY7 271 aaPredicted RBP10.63□□□□□ -0.71
PTPRF-215ENST00000496447 ZNRD1Q9P1U0 126 aa10.63□□□□□ -0.71
PTPRF-215ENST00000496447 RFNGQ9Y644 331 aa10.63□□□□□ -0.71
PTPRF-215ENST00000496447 J3QLI3 93 aa10.63□□□□□ -0.71
PTPRF-215ENST00000496447 MORN3Q6PF18 240 aaPredicted RBP10.63□□□□□ -0.71
PTPRF-215ENST00000496447 FAM231BA6NCW3 169 aa10.63□□□□□ -0.71
PTPRF-215ENST00000496447 CFHR2P36980 270 aa10.63□□□□□ -0.71
PTPRF-215ENST00000496447 Q6ZS49 121 aa10.63□□□□□ -0.71
PTPRF-215ENST00000496447 DEFB104AQ8WTQ1 72 aa10.63□□□□□ -0.71
PTPRF-215ENST00000496447 GATA4P43694 442 aa10.62□□□□□ -0.71
PTPRF-215ENST00000496447 CD300EQ496F6 205 aaPredicted RBP10.62□□□□□ -0.71
PTPRF-215ENST00000496447 C9orf118A6NHY6 69 aa10.62□□□□□ -0.71
PTPRF-215ENST00000496447 LYPD1Q8N2G4 141 aa10.62□□□□□ -0.71
PTPRF-215ENST00000496447 TSSC4Q9Y5U2 329 aaPredicted RBP10.62□□□□□ -0.71
PTPRF-215ENST00000496447 TICRRQ7Z2Z1 1910 aa10.62□□□□□ -0.71
PTPRF-215ENST00000496447 PROK2Q9HC23 129 aa10.61□□□□□ -0.71
PTPRF-215ENST00000496447 D6R8Y8 96 aa10.61□□□□□ -0.71
PTPRF-215ENST00000496447 K7EP34 96 aa10.61□□□□□ -0.71
PTPRF-215ENST00000496447 TEX43Q6ZNM6 134 aa10.61□□□□□ -0.71
PTPRF-215ENST00000496447 A0A1W2PPI3 338 aa10.61□□□□□ -0.71
PTPRF-215ENST00000496447 ZSWIM8A7E2V4 1837 aa10.61□□□□□ -0.71
PTPRF-215ENST00000496447 C15orf62A8K5M9 175 aa10.61□□□□□ -0.71
PTPRF-215ENST00000496447 HEATR1Q9H583 2144 aaKnown RBP10.61□□□□□ -0.71
PTPRF-215ENST00000496447 ROS1P08922 2347 aa10.6□□□□□ -0.71
PTPRF-215ENST00000496447 IGHV4-39P01824 125 aa10.6□□□□□ -0.71
PTPRF-215ENST00000496447 RPP25LQ8N5L8 163 aaKnown RBP10.6□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 92 ms