RNA–Protein interactions for RNA: ENST00000491769.1

COL6A3-212, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5

Gene COL6A3, Length 6,731 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-212ENST00000491769 C2orf82Q6UX34 121 aa10.63□□□□□ -0.71
COL6A3-212ENST00000491769 TMEM158Q8WZ71 300 aa10.63□□□□□ -0.71
COL6A3-212ENST00000491769 CEP290O15078 2479 aa10.63□□□□□ -0.71
COL6A3-212ENST00000491769 A0A087WWC5 75 aa10.63□□□□□ -0.71
COL6A3-212ENST00000491769 PRSS29PA6NIE9 313 aa10.63□□□□□ -0.71
COL6A3-212ENST00000491769 TNFRSF6BO95407 300 aa10.63□□□□□ -0.71
COL6A3-212ENST00000491769 TBX6O95947 436 aaPredicted RBP10.63□□□□□ -0.71
COL6A3-212ENST00000491769 CFHR2P36980 270 aa10.63□□□□□ -0.71
COL6A3-212ENST00000491769 ARMS2P0C7Q2 107 aa10.62□□□□□ -0.71
COL6A3-212ENST00000491769 TMEM170AQ8WVE7 144 aa10.62□□□□□ -0.71
COL6A3-212ENST00000491769 PATJQ8NI35 1801 aa10.62□□□□□ -0.71
COL6A3-212ENST00000491769 ANAPC13Q9BS18 74 aa10.62□□□□□ -0.71
COL6A3-212ENST00000491769 RBBP6Q7Z6E9 1792 aaKnown RBP10.62□□□□□ -0.71
COL6A3-212ENST00000491769 DOCK3Q8IZD9 2030 aa10.62□□□□□ -0.71
COL6A3-212ENST00000491769 SCN10AQ9Y5Y9 1956 aa10.62□□□□□ -0.71
COL6A3-212ENST00000491769 C5orf24Q7Z6I8 188 aa10.62□□□□□ -0.71
COL6A3-212ENST00000491769 WFDC1Q9HC57 220 aa10.62□□□□□ -0.71
COL6A3-212ENST00000491769 TMEM243Q9BU79 118 aa10.62□□□□□ -0.71
COL6A3-212ENST00000491769 LMO1P25800 156 aa10.62□□□□□ -0.71
COL6A3-212ENST00000491769 ABCA4P78363 2273 aa10.62□□□□□ -0.71
COL6A3-212ENST00000491769 RNF222A6NCQ9 220 aa10.62□□□□□ -0.71
COL6A3-212ENST00000491769 LINC00473A8K010 186 aa10.62□□□□□ -0.71
COL6A3-212ENST00000491769 RHODO00212 210 aa10.62□□□□□ -0.71
COL6A3-212ENST00000491769 SAMD5Q5TGI4 173 aa10.62□□□□□ -0.71
COL6A3-212ENST00000491769 ID3Q02535 119 aa10.61□□□□□ -0.71
COL6A3-212ENST00000491769 RNF126Q9BV68 326 aa10.61□□□□□ -0.71
COL6A3-212ENST00000491769 LAMTOR2Q9Y2Q5 125 aa10.61□□□□□ -0.71
COL6A3-212ENST00000491769 RPP25LQ8N5L8 163 aaKnown RBP10.61□□□□□ -0.71
COL6A3-212ENST00000491769 TSSC4Q9Y5U2 329 aaPredicted RBP10.61□□□□□ -0.71
COL6A3-212ENST00000491769 AKAP6Q13023 2319 aa10.61□□□□□ -0.71
COL6A3-212ENST00000491769 MMP23AO75900 390 aa10.61□□□□□ -0.71
COL6A3-212ENST00000491769 NDUFB8O95169 186 aa10.61□□□□□ -0.71
COL6A3-212ENST00000491769 COL4A1P02462 1669 aa10.6□□□□□ -0.71
COL6A3-212ENST00000491769 TEX48A0A1B0GUV7 120 aa10.6□□□□□ -0.71
COL6A3-212ENST00000491769 IGKV1-39P01597 117 aa10.6□□□□□ -0.71
COL6A3-212ENST00000491769 IGKV1D-39P04432 117 aa10.6□□□□□ -0.71
COL6A3-212ENST00000491769 OCIAD2Q56VL3 154 aa10.6□□□□□ -0.71
COL6A3-212ENST00000491769 SMIM2Q9BVW6 85 aa10.6□□□□□ -0.71
COL6A3-212ENST00000491769 MLANAQ16655 118 aa10.6□□□□□ -0.71
COL6A3-212ENST00000491769 CACNA1BQ00975 2339 aa10.6□□□□□ -0.71
COL6A3-212ENST00000491769 HSD52Q0P140 79 aa10.6□□□□□ -0.71
COL6A3-212ENST00000491769 HGFACQ04756 655 aa10.59□□□□□ -0.71
COL6A3-212ENST00000491769 TMEM242Q9NWH2 141 aa10.59□□□□□ -0.71
COL6A3-212ENST00000491769 ZNF236Q9UL36 1845 aa10.59□□□□□ -0.71
COL6A3-212ENST00000491769 NAA38Q9BRA0 125 aaKnown RBP10.59□□□□□ -0.71
COL6A3-212ENST00000491769 IGHV1OR15-1A0A075B7D0 117 aa10.59□□□□□ -0.71
COL6A3-212ENST00000491769 IGKV1-16P04430 117 aa10.59□□□□□ -0.71
COL6A3-212ENST00000491769 CARHSP1Q9Y2V2 147 aaKnown RBP10.59□□□□□ -0.71
COL6A3-212ENST00000491769 Q6P435 159 aa10.58□□□□□ -0.71
COL6A3-212ENST00000491769 AMN1Q8IY45 258 aa10.58□□□□□ -0.71
COL6A3-212ENST00000491769 LYPD1Q8N2G4 141 aa10.58□□□□□ -0.71
COL6A3-212ENST00000491769 AGMATQ9BSE5 352 aa10.58□□□□□ -0.71
COL6A3-212ENST00000491769 SCRT2Q9NQ03 307 aa10.58□□□□□ -0.71
COL6A3-212ENST00000491769 CD5LO43866 347 aa10.58□□□□□ -0.72
COL6A3-212ENST00000491769 LYPD3O95274 346 aa10.58□□□□□ -0.72
COL6A3-212ENST00000491769 LINC01559Q495D7 138 aa10.58□□□□□ -0.72
COL6A3-212ENST00000491769 PSME4Q14997 1843 aa10.58□□□□□ -0.72
COL6A3-212ENST00000491769 BRCA1P38398 1863 aaKnown RBP10.58□□□□□ -0.72
COL6A3-212ENST00000491769 RPL18AQ02543 176 aaKnown RBP10.58□□□□□ -0.72
COL6A3-212ENST00000491769 I3L3M4 83 aa10.58□□□□□ -0.72
COL6A3-212ENST00000491769 NTF4P34130 210 aa10.58□□□□□ -0.72
COL6A3-212ENST00000491769 SHANK2-AS3Q9BTD1 123 aa10.58□□□□□ -0.72
COL6A3-212ENST00000491769 TP53TG1Q9Y2A0 90 aa10.58□□□□□ -0.72
COL6A3-212ENST00000491769 B3GALT5-AS1P59052 145 aa10.58□□□□□ -0.72
COL6A3-212ENST00000491769 BCL6BQ8N143 479 aaPredicted RBP10.58□□□□□ -0.72
COL6A3-212ENST00000491769 TMEM190Q8WZ59 177 aa10.58□□□□□ -0.72
COL6A3-212ENST00000491769 NUP35Q8NFH5 326 aa10.57□□□□□ -0.72
COL6A3-212ENST00000491769 Q6ZQT7 251 aa10.57□□□□□ -0.72
COL6A3-212ENST00000491769 C8orf49Q96NF6 230 aa10.57□□□□□ -0.72
COL6A3-212ENST00000491769 SRSF8Q9BRL6 282 aaKnown RBP10.57□□□□□ -0.72
COL6A3-212ENST00000491769 CACNA1IQ9P0X4 2223 aa10.57□□□□□ -0.72
COL6A3-212ENST00000491769 C5orf63A6NC05 138 aa10.57□□□□□ -0.72
COL6A3-212ENST00000491769 RNASE2P10153 161 aaKnown RBP10.57□□□□□ -0.72
COL6A3-212ENST00000491769 DEFB113Q30KQ7 82 aa10.57□□□□□ -0.72
COL6A3-212ENST00000491769 FBLN5Q9UBX5 448 aa10.57□□□□□ -0.72
COL6A3-212ENST00000491769 FAM186AA6NE01 2351 aa10.57□□□□□ -0.72
COL6A3-212ENST00000491769 WISP1O95388 367 aa10.57□□□□□ -0.72
COL6A3-212ENST00000491769 FAM120AOSQ5T036 256 aa10.57□□□□□ -0.72
COL6A3-212ENST00000491769 PRSS33Q8NF86 280 aa10.57□□□□□ -0.72
COL6A3-212ENST00000491769 DEFB105AQ8NG35 78 aa10.57□□□□□ -0.72
COL6A3-212ENST00000491769 A0A1W2PPI3 338 aa10.57□□□□□ -0.72
COL6A3-212ENST00000491769 C9orf66Q5T8R8 295 aa10.57□□□□□ -0.72
COL6A3-212ENST00000491769 LAIR2Q6ISS4 152 aa10.57□□□□□ -0.72
COL6A3-212ENST00000491769 CDKN1BP46527 198 aa10.56□□□□□ -0.72
COL6A3-212ENST00000491769 C17orf82Q86X59 251 aaPredicted RBP10.56□□□□□ -0.72
COL6A3-212ENST00000491769 CCL24O00175 119 aa10.56□□□□□ -0.72
COL6A3-212ENST00000491769 SRSF3P84103 164 aaKnown RBP10.56□□□□□ -0.72
COL6A3-212ENST00000491769 GUSBP1Q15486 140 aa10.56□□□□□ -0.72
COL6A3-212ENST00000491769 GLRX5Q86SX6 157 aa10.56□□□□□ -0.72
COL6A3-212ENST00000491769 NOP10Q9NPE3 64 aaKnown RBP10.56□□□□□ -0.72
COL6A3-212ENST00000491769 A0A1B0GUS0 222 aa10.56□□□□□ -0.72
COL6A3-212ENST00000491769 DEFB112Q30KQ8 113 aa10.56□□□□□ -0.72
COL6A3-212ENST00000491769 hADV29S1A0JD25 119 aa10.55□□□□□ -0.72
COL6A3-212ENST00000491769 TET1Q8NFU7 2136 aa10.55□□□□□ -0.72
COL6A3-212ENST00000491769 TCF15Q12870 199 aa10.55□□□□□ -0.72
COL6A3-212ENST00000491769 ZNF362Q5T0B9 420 aaPredicted RBP10.55□□□□□ -0.72
COL6A3-212ENST00000491769 DOPEY2Q9Y3R5 2298 aa10.55□□□□□ -0.72
COL6A3-212ENST00000491769 DOCK6Q96HP0 2047 aa10.55□□□□□ -0.72
COL6A3-212ENST00000491769 ATP6V0BQ99437 205 aa10.55□□□□□ -0.72
COL6A3-212ENST00000491769 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP10.55□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 45.9 ms