RNA–Protein interactions for RNA: ENST00000490866.2

SYNE1-229, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 581 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-229ENST00000490866 SLC25A2Q9BXI2 301 aa5.33□□□□□ -1.56
SYNE1-229ENST00000490866 SEC11CQ9BY50 192 aa5.33□□□□□ -1.56
SYNE1-229ENST00000490866 SLC25A22Q9H936 323 aa5.33□□□□□ -1.56
SYNE1-229ENST00000490866 TREM1Q9NP99 234 aa5.33□□□□□ -1.56
SYNE1-229ENST00000490866 DOK5Q9P104 306 aa5.33□□□□□ -1.56
SYNE1-229ENST00000490866 ZFHX3Q15911 3703 aa5.33□□□□□ -1.56
SYNE1-229ENST00000490866 FN1P02751 2386 aaKnown RBP5.33□□□□□ -1.56
SYNE1-229ENST00000490866 TRBV19A0A075B6N1 114 aa5.32□□□□□ -1.56
SYNE1-229ENST00000490866 RBAKDNA6NC62 111 aa5.32□□□□□ -1.56
SYNE1-229ENST00000490866 C11orf94C9JXX5 98 aa5.32□□□□□ -1.56
SYNE1-229ENST00000490866 ISLRO14498 428 aa5.32□□□□□ -1.56
SYNE1-229ENST00000490866 CHEK1O14757 476 aa5.32□□□□□ -1.56
SYNE1-229ENST00000490866 SLC25A5P05141 298 aaKnown RBP5.32□□□□□ -1.56
SYNE1-229ENST00000490866 IGLC2P0DOY2 106 aa5.32□□□□□ -1.56
SYNE1-229ENST00000490866 TAS2R60P59551 318 aa5.32□□□□□ -1.56
SYNE1-229ENST00000490866 TMEM95Q3KNT9 176 aa5.32□□□□□ -1.56
SYNE1-229ENST00000490866 TCTEX1D4Q5JR98 221 aa5.32□□□□□ -1.56
SYNE1-229ENST00000490866 SAPCD1Q5SSQ6 148 aa5.32□□□□□ -1.56
SYNE1-229ENST00000490866 RBPMS2Q6ZRY4 209 aaKnown RBP5.32□□□□□ -1.56
SYNE1-229ENST00000490866 C19orf35Q6ZS72 473 aa5.32□□□□□ -1.56
SYNE1-229ENST00000490866 C3orf56Q8N813 242 aa5.32□□□□□ -1.56
SYNE1-229ENST00000490866 C5orf17Q8NAS9 161 aa5.32□□□□□ -1.56
SYNE1-229ENST00000490866 FXYD5Q96DB9 178 aa5.32□□□□□ -1.56
SYNE1-229ENST00000490866 CITED1Q99966 193 aa5.32□□□□□ -1.56
SYNE1-229ENST00000490866 CITED2Q99967 270 aaPredicted RBP5.32□□□□□ -1.56
SYNE1-229ENST00000490866 RHPN1-AS1Q9BWJ2 59 aa5.32□□□□□ -1.56
SYNE1-229ENST00000490866 NRN1Q9NPD7 142 aa5.32□□□□□ -1.56
SYNE1-229ENST00000490866 LY96Q9Y6Y9 160 aa5.32□□□□□ -1.56
SYNE1-229ENST00000490866 C2CD3Q4AC94 2353 aa5.31□□□□□ -1.56
SYNE1-229ENST00000490866 JMJD1CQ15652 2540 aa5.31□□□□□ -1.56
SYNE1-229ENST00000490866 TRBV7-9A0A0J9YWB2 115 aa5.31□□□□□ -1.56
SYNE1-229ENST00000490866 LOC102723971A0A1B0GUV8 181 aa5.31□□□□□ -1.56
SYNE1-229ENST00000490866 TMEM218A2RU14 115 aa5.31□□□□□ -1.56
SYNE1-229ENST00000490866 FAM74A7A6NL05 159 aa5.31□□□□□ -1.56
SYNE1-229ENST00000490866 DNASE2O00115 360 aaPredicted RBP5.31□□□□□ -1.56
SYNE1-229ENST00000490866 OVOL1O14753 267 aa5.31□□□□□ -1.56
SYNE1-229ENST00000490866 PAGE4O60829 102 aa5.31□□□□□ -1.56
SYNE1-229ENST00000490866 CD28P10747 220 aa5.31□□□□□ -1.56
SYNE1-229ENST00000490866 FOLR2P14207 255 aa5.31□□□□□ -1.56
SYNE1-229ENST00000490866 GP9P14770 177 aa5.31□□□□□ -1.56
SYNE1-229ENST00000490866 SYNJ2BPP57105 145 aa5.31□□□□□ -1.56
SYNE1-229ENST00000490866 RANP62826 216 aaKnown RBP5.31□□□□□ -1.56
SYNE1-229ENST00000490866 RPL11P62913 178 aaKnown RBP5.31□□□□□ -1.56
SYNE1-229ENST00000490866 SUMO1P63165 101 aaKnown RBP5.31□□□□□ -1.56
SYNE1-229ENST00000490866 RPL19P84098 196 aaKnown RBP5.31□□□□□ -1.56
SYNE1-229ENST00000490866 ANKRD39Q53RE8 183 aa5.31□□□□□ -1.56
SYNE1-229ENST00000490866 AWAT1Q58HT5 328 aa5.31□□□□□ -1.56
SYNE1-229ENST00000490866 GCSAMLQ5JQS6 135 aa5.31□□□□□ -1.56
SYNE1-229ENST00000490866 C12orf54Q6X4T0 127 aa5.31□□□□□ -1.56
SYNE1-229ENST00000490866 SVBPQ8N300 66 aa5.31□□□□□ -1.56
SYNE1-229ENST00000490866 ZNF414Q96IQ9 312 aa5.31□□□□□ -1.56
SYNE1-229ENST00000490866 SPAG8Q99932 426 aaPredicted RBP5.31□□□□□ -1.56
SYNE1-229ENST00000490866 FAM110AQ9BQ89 295 aa5.31□□□□□ -1.56
SYNE1-229ENST00000490866 ATG101Q9BSB4 218 aa5.31□□□□□ -1.56
SYNE1-229ENST00000490866 ZFP30Q9Y2G7 519 aa5.31□□□□□ -1.56
SYNE1-229ENST00000490866 S4R3C0 116 aa5.31□□□□□ -1.56
SYNE1-229ENST00000490866 IGHV4OR15-8A0A075B7B6 117 aa5.3□□□□□ -1.56
SYNE1-229ENST00000490866 A0A087WW49 117 aa5.3□□□□□ -1.56
SYNE1-229ENST00000490866 TRBV6-1A0A0K0K1D8 114 aa5.3□□□□□ -1.56
SYNE1-229ENST00000490866 PGPA6NDG6 321 aa5.3□□□□□ -1.56
SYNE1-229ENST00000490866 C2orf70A6NJV1 201 aa5.3□□□□□ -1.56
SYNE1-229ENST00000490866 TSPAN4O14817 238 aa5.3□□□□□ -1.56
SYNE1-229ENST00000490866 SNAPINO95295 136 aa5.3□□□□□ -1.56
SYNE1-229ENST00000490866 CNN1P51911 297 aaKnown RBP5.3□□□□□ -1.56
SYNE1-229ENST00000490866 FGF8P55075 233 aaPredicted RBP5.3□□□□□ -1.56
SYNE1-229ENST00000490866 CCL20P78556 96 aa5.3□□□□□ -1.56
SYNE1-229ENST00000490866 HAGHQ16775 308 aa5.3□□□□□ -1.56
SYNE1-229ENST00000490866 TMEM241Q24JQ0 296 aa5.3□□□□□ -1.56
SYNE1-229ENST00000490866 TOR2AQ5JU69 321 aa5.3□□□□□ -1.56
SYNE1-229ENST00000490866 CCDC28AQ8IWP9 274 aa5.3□□□□□ -1.56
SYNE1-229ENST00000490866 DYNLRB2Q8TF09 96 aa5.3□□□□□ -1.56
SYNE1-229ENST00000490866 GLMPQ8WWB7 406 aa5.3□□□□□ -1.56
SYNE1-229ENST00000490866 C11orf52Q96A22 123 aa5.3□□□□□ -1.56
SYNE1-229ENST00000490866 FMC1Q96HJ9 113 aa5.3□□□□□ -1.56
SYNE1-229ENST00000490866 BTF3L4Q96K17 158 aa5.3□□□□□ -1.56
SYNE1-229ENST00000490866 C16orf92Q96LL3 132 aa5.3□□□□□ -1.56
SYNE1-229ENST00000490866 OR5B12Q96R08 314 aa5.3□□□□□ -1.56
SYNE1-229ENST00000490866 NIPSNAP3BQ9BS92 247 aa5.3□□□□□ -1.56
SYNE1-229ENST00000490866 SCRT1Q9BWW7 348 aa5.3□□□□□ -1.56
SYNE1-229ENST00000490866 PPP1R14DQ9NXH3 145 aa5.3□□□□□ -1.56
SYNE1-229ENST00000490866 EPDR1Q9UM22 224 aa5.3□□□□□ -1.56
SYNE1-229ENST00000490866 KLF12Q9Y4X4 402 aa5.3□□□□□ -1.56
SYNE1-229ENST00000490866 LENEPQ9Y5L5 61 aa5.3□□□□□ -1.56
SYNE1-229ENST00000490866 SETD2Q9BYW2 2564 aaPredicted RBP5.3□□□□□ -1.56
SYNE1-229ENST00000490866 TRAV5A0A0B4J249 113 aa5.29□□□□□ -1.56
SYNE1-229ENST00000490866 OR4C46A6NHA9 309 aa5.29□□□□□ -1.56
SYNE1-229ENST00000490866 C9JCJ5 164 aa5.29□□□□□ -1.56
SYNE1-229ENST00000490866 F8W036 122 aa5.29□□□□□ -1.56
SYNE1-229ENST00000490866 PPP1R2P9O14990 202 aa5.29□□□□□ -1.56
SYNE1-229ENST00000490866 MRPS12O15235 138 aaKnown RBP5.29□□□□□ -1.56
SYNE1-229ENST00000490866 OR10J4P0C629 311 aa5.29□□□□□ -1.56
SYNE1-229ENST00000490866 UBE2G1P62253 170 aa5.29□□□□□ -1.56
SYNE1-229ENST00000490866 ICAM4Q14773 271 aa5.29□□□□□ -1.56
SYNE1-229ENST00000490866 TM4SF20Q53R12 229 aa5.29□□□□□ -1.56
SYNE1-229ENST00000490866 C10orf91Q5T1B1 145 aa5.29□□□□□ -1.56
SYNE1-229ENST00000490866 FAM90A2PQ658T7 463 aa5.29□□□□□ -1.56
SYNE1-229ENST00000490866 LCN12Q6JVE5 192 aa5.29□□□□□ -1.56
SYNE1-229ENST00000490866 UNQ9165/PRO28630Q6UXU0 137 aa5.29□□□□□ -1.56
SYNE1-229ENST00000490866 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP5.29□□□□□ -1.56
SYNE1-229ENST00000490866 CYB561D1Q8N8Q1 229 aa5.29□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 67.6 ms