RNA–Protein interactions for RNA: ENST00000488321.1

TRIM54-204, Transcript of tripartite motif containing 54, humanhuman

TSL 2

Gene TRIM54, Length 560 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-204ENST00000488321 Q8NAQ8 132 aa10.87□□□□□ -0.67
TRIM54-204ENST00000488321 MFFQ9GZY8 342 aa10.87□□□□□ -0.67
TRIM54-204ENST00000488321 X6R8D5 127 aa10.87□□□□□ -0.67
TRIM54-204ENST00000488321 TRAV5A0A0B4J249 113 aa10.86□□□□□ -0.67
TRIM54-204ENST00000488321 H3BTX0 84 aa10.86□□□□□ -0.67
TRIM54-204ENST00000488321 MRPS12O15235 138 aaKnown RBP10.86□□□□□ -0.67
TRIM54-204ENST00000488321 ZNF705DP0CH99 300 aaPredicted RBP10.86□□□□□ -0.67
TRIM54-204ENST00000488321 ZNF705BP0CI00 300 aaPredicted RBP10.86□□□□□ -0.67
TRIM54-204ENST00000488321 CXCL3P19876 107 aa10.86□□□□□ -0.67
TRIM54-204ENST00000488321 HLA-DMBP28068 263 aa10.86□□□□□ -0.67
TRIM54-204ENST00000488321 LCN15Q6UWW0 184 aa10.86□□□□□ -0.67
TRIM54-204ENST00000488321 CLUHP3Q96NS8 147 aa10.86□□□□□ -0.67
TRIM54-204ENST00000488321 NPCDR1Q9BY65 106 aa10.86□□□□□ -0.67
TRIM54-204ENST00000488321 CSMD3Q7Z407 3707 aa10.85□□□□□ -0.67
TRIM54-204ENST00000488321 DYNC2H1Q8NCM8 4307 aaKnown RBP10.85□□□□□ -0.67
TRIM54-204ENST00000488321 DUSP14O95147 198 aaKnown RBP10.85□□□□□ -0.67
TRIM54-204ENST00000488321 RBMY1A1P0DJD3 496 aaKnown RBP10.85□□□□□ -0.67
TRIM54-204ENST00000488321 RBMY1CP0DJD4 496 aa10.85□□□□□ -0.67
TRIM54-204ENST00000488321 CNN1P51911 297 aaKnown RBP10.85□□□□□ -0.67
TRIM54-204ENST00000488321 RBMY1FQ15415 496 aaKnown RBP10.85□□□□□ -0.67
TRIM54-204ENST00000488321 CEMP1Q6PRD7 247 aaPredicted RBP10.85□□□□□ -0.67
TRIM54-204ENST00000488321 ZNF709Q8N972 641 aa10.85□□□□□ -0.67
TRIM54-204ENST00000488321 PHLDA1Q8WV24 401 aaPredicted RBP10.85□□□□□ -0.67
TRIM54-204ENST00000488321 RNF126Q9BV68 326 aa10.85□□□□□ -0.67
TRIM54-204ENST00000488321 MBD2Q9UBB5 411 aa10.85□□□□□ -0.67
TRIM54-204ENST00000488321 KLK5Q9Y337 293 aaPredicted RBP10.85□□□□□ -0.67
TRIM54-204ENST00000488321 PRB4P10163 310 aaPredicted RBP10.84□□□□□ -0.67
TRIM54-204ENST00000488321 CXCL2P19875 107 aa10.84□□□□□ -0.67
TRIM54-204ENST00000488321 HIST1H1AQ02539 215 aaPredicted RBP10.84□□□□□ -0.67
TRIM54-204ENST00000488321 PSG3Q16557 428 aa10.84□□□□□ -0.67
TRIM54-204ENST00000488321 CHAC2Q8WUX2 184 aa10.84□□□□□ -0.67
TRIM54-204ENST00000488321 SLC50A1Q9BRV3 221 aa10.84□□□□□ -0.67
TRIM54-204ENST00000488321 SMIM3Q9BZL3 60 aa10.84□□□□□ -0.67
TRIM54-204ENST00000488321 RPL12P30050 165 aaKnown RBP10.83□□□□□ -0.68
TRIM54-204ENST00000488321 RHOBP62745 196 aa10.83□□□□□ -0.68
TRIM54-204ENST00000488321 GCSAMLQ5JQS6 135 aa10.83□□□□□ -0.68
TRIM54-204ENST00000488321 RPUSD4Q96CM3 377 aaKnown RBP10.83□□□□□ -0.68
TRIM54-204ENST00000488321 WDR61Q9GZS3 305 aaKnown RBP10.83□□□□□ -0.68
TRIM54-204ENST00000488321 MED28Q9H204 178 aa10.83□□□□□ -0.68
TRIM54-204ENST00000488321 HRH4Q9H3N8 390 aa10.83□□□□□ -0.68
TRIM54-204ENST00000488321 ZNF331Q9NQX6 463 aaPredicted RBP10.83□□□□□ -0.68
TRIM54-204ENST00000488321 KCNIP2Q9NS61 270 aa10.83□□□□□ -0.68
TRIM54-204ENST00000488321 PPP1R14DQ9NXH3 145 aa10.83□□□□□ -0.68
TRIM54-204ENST00000488321 GOLT1BQ9Y3E0 138 aa10.83□□□□□ -0.68
TRIM54-204ENST00000488321 HSPB11Q9Y547 144 aa10.83□□□□□ -0.68
TRIM54-204ENST00000488321 TENM2Q9NT68 2774 aa10.82□□□□□ -0.68
TRIM54-204ENST00000488321 C17orf112F2Z3M2 114 aa10.82□□□□□ -0.68
TRIM54-204ENST00000488321 H3BQ15 152 aa10.82□□□□□ -0.68
TRIM54-204ENST00000488321 M0R2Z0 102 aa10.82□□□□□ -0.68
TRIM54-204ENST00000488321 SLC17A3O00476 420 aa10.82□□□□□ -0.68
TRIM54-204ENST00000488321 IGLC2P0DOY2 106 aa10.82□□□□□ -0.68
TRIM54-204ENST00000488321 EMP1P54849 157 aa10.82□□□□□ -0.68
TRIM54-204ENST00000488321 FCN2Q15485 313 aa10.82□□□□□ -0.68
TRIM54-204ENST00000488321 SPINK13Q1W4C9 94 aa10.82□□□□□ -0.68
TRIM54-204ENST00000488321 ZNF705AQ6ZN79 300 aaPredicted RBP10.82□□□□□ -0.68
TRIM54-204ENST00000488321 OR11H7Q8NGC8 314 aa10.82□□□□□ -0.68
TRIM54-204ENST00000488321 OR8A1Q8NGG7 326 aa10.82□□□□□ -0.68
TRIM54-204ENST00000488321 ATP5SQ99766 215 aa10.82□□□□□ -0.68
TRIM54-204ENST00000488321 TMEM208Q9BTX3 173 aa10.82□□□□□ -0.68
TRIM54-204ENST00000488321 SACSQ9NZJ4 4579 aa10.82□□□□□ -0.68
TRIM54-204ENST00000488321 IFNA5P01569 189 aa10.81□□□□□ -0.68
TRIM54-204ENST00000488321 GUK1Q16774 197 aa10.81□□□□□ -0.68
TRIM54-204ENST00000488321 AMTNQ6UX39 209 aa10.81□□□□□ -0.68
TRIM54-204ENST00000488321 RYR2Q92736 4967 aa10.81□□□□□ -0.68
TRIM54-204ENST00000488321 A8MTW9 85 aa10.8□□□□□ -0.68
TRIM54-204ENST00000488321 ZNF705FA8MVS1 300 aaPredicted RBP10.8□□□□□ -0.68
TRIM54-204ENST00000488321 BOLA2-SMG1P6H3BVE0 249 aa10.8□□□□□ -0.68
TRIM54-204ENST00000488321 AMBPP02760 352 aa10.8□□□□□ -0.68
TRIM54-204ENST00000488321 RGS21Q2M5E4 152 aa10.8□□□□□ -0.68
TRIM54-204ENST00000488321 C1orf158Q8N1D5 194 aa10.8□□□□□ -0.68
TRIM54-204ENST00000488321 SCGB1C1Q8TD33 95 aa10.8□□□□□ -0.68
TRIM54-204ENST00000488321 IGF2BP2-AS1Q96M15 143 aa10.8□□□□□ -0.68
TRIM54-204ENST00000488321 NEU1Q99519 415 aa10.8□□□□□ -0.68
TRIM54-204ENST00000488321 ZNF586Q9NXT0 402 aa10.8□□□□□ -0.68
TRIM54-204ENST00000488321 RFNGQ9Y644 331 aa10.8□□□□□ -0.68
TRIM54-204ENST00000488321 SMIM9A6NGZ8 99 aa10.79□□□□□ -0.68
TRIM54-204ENST00000488321 INSP01308 110 aa10.79□□□□□ -0.68
TRIM54-204ENST00000488321 HBE1P02100 147 aa10.79□□□□□ -0.68
TRIM54-204ENST00000488321 PYYP10082 97 aa10.79□□□□□ -0.68
TRIM54-204ENST00000488321 ZNF767PQ75MW2 155 aa10.79□□□□□ -0.68
TRIM54-204ENST00000488321 MIR17HGQ75NE6 70 aa10.79□□□□□ -0.68
TRIM54-204ENST00000488321 BAP18Q8IXM2 172 aa10.79□□□□□ -0.68
TRIM54-204ENST00000488321 OR10J6PQ8NGY7 276 aa10.79□□□□□ -0.68
TRIM54-204ENST00000488321 SAT2Q96F10 170 aaPredicted RBP10.79□□□□□ -0.68
TRIM54-204ENST00000488321 TMEM14CQ9P0S9 112 aa10.79□□□□□ -0.68
TRIM54-204ENST00000488321 CELA1Q9UNI1 258 aa10.79□□□□□ -0.68
TRIM54-204ENST00000488321 TIMM9Q9Y5J7 89 aa10.79□□□□□ -0.68
TRIM54-204ENST00000488321 AGRNO00468 2067 aa10.78□□□□□ -0.68
TRIM54-204ENST00000488321 TRAV12-2A0A075B6T6 113 aa10.78□□□□□ -0.68
TRIM54-204ENST00000488321 PRAC2D3DTV9 90 aa10.78□□□□□ -0.68
TRIM54-204ENST00000488321 HIST1H1EP10412 219 aaKnown RBP10.78□□□□□ -0.68
TRIM54-204ENST00000488321 RRN3P1Q2M238 152 aa10.78□□□□□ -0.68
TRIM54-204ENST00000488321 Q6ZTC4 211 aa10.78□□□□□ -0.68
TRIM54-204ENST00000488321 C2CD4CQ8TF44 421 aa10.78□□□□□ -0.68
TRIM54-204ENST00000488321 BLNKQ8WV28 456 aa10.78□□□□□ -0.68
TRIM54-204ENST00000488321 TRBV19A0A075B6N1 114 aa10.77□□□□□ -0.69
TRIM54-204ENST00000488321 LOC102723971A0A1B0GUV8 181 aa10.77□□□□□ -0.69
TRIM54-204ENST00000488321 TMEM189A5PLL7 270 aa10.77□□□□□ -0.69
TRIM54-204ENST00000488321 C11orf94C9JXX5 98 aa10.77□□□□□ -0.69
TRIM54-204ENST00000488321 LY6G6CO95867 125 aa10.77□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 55.5 ms