RNA–Protein interactions for RNA: ENST00000486549.5

USP4-212, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 749 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-212ENST00000486549 FXYD7P58549 80 aa10.78□□□□□ -0.68
USP4-212ENST00000486549 FAM78BQ5VT40 261 aa10.78□□□□□ -0.68
USP4-212ENST00000486549 ZFAND6Q6FIF0 208 aa10.78□□□□□ -0.68
USP4-212ENST00000486549 LCN15Q6UWW0 184 aa10.78□□□□□ -0.68
USP4-212ENST00000486549 ZNF738Q8NE65 137 aa10.78□□□□□ -0.68
USP4-212ENST00000486549 OR2T35Q8NGX2 323 aa10.78□□□□□ -0.68
USP4-212ENST00000486549 OR11H2Q8NH07 326 aa10.78□□□□□ -0.68
USP4-212ENST00000486549 RARRES2Q99969 163 aa10.78□□□□□ -0.68
USP4-212ENST00000486549 FXYD6-FXYD2A0A087WZ82 144 aa10.77□□□□□ -0.69
USP4-212ENST00000486549 A0A0J9YX75 114 aa10.77□□□□□ -0.69
USP4-212ENST00000486549 NUTF2P61970 127 aaKnown RBP10.77□□□□□ -0.69
USP4-212ENST00000486549 TMEM41BQ5BJD5 291 aa10.77□□□□□ -0.69
USP4-212ENST00000486549 SPATA31B1PQ5VZV4 182 aa10.77□□□□□ -0.69
USP4-212ENST00000486549 XCL2Q9UBD3 114 aa10.77□□□□□ -0.69
USP4-212ENST00000486549 H3BQ15 152 aa10.76□□□□□ -0.69
USP4-212ENST00000486549 SLC17A3O00476 420 aa10.76□□□□□ -0.69
USP4-212ENST00000486549 ZNF705DP0CH99 300 aaPredicted RBP10.76□□□□□ -0.69
USP4-212ENST00000486549 ZNF705BP0CI00 300 aaPredicted RBP10.76□□□□□ -0.69
USP4-212ENST00000486549 IGLC2P0DOY2 106 aa10.76□□□□□ -0.69
USP4-212ENST00000486549 CXCL2P19875 107 aa10.76□□□□□ -0.69
USP4-212ENST00000486549 FFAR4Q5NUL3 377 aa10.76□□□□□ -0.69
USP4-212ENST00000486549 MIR17HGQ75NE6 70 aa10.76□□□□□ -0.69
USP4-212ENST00000486549 AQP10Q96PS8 301 aa10.76□□□□□ -0.69
USP4-212ENST00000486549 SLC50A1Q9BRV3 221 aa10.76□□□□□ -0.69
USP4-212ENST00000486549 RFNGQ9Y644 331 aa10.76□□□□□ -0.69
USP4-212ENST00000486549 PYYP10082 97 aa10.75□□□□□ -0.69
USP4-212ENST00000486549 PSG3Q16557 428 aa10.75□□□□□ -0.69
USP4-212ENST00000486549 INO80EQ8NBZ0 244 aaPredicted RBP10.75□□□□□ -0.69
USP4-212ENST00000486549 SLC25A2Q9BXI2 301 aa10.75□□□□□ -0.69
USP4-212ENST00000486549 C1QTNF4Q9BXJ3 329 aa10.75□□□□□ -0.69
USP4-212ENST00000486549 MFFQ9GZY8 342 aa10.75□□□□□ -0.69
USP4-212ENST00000486549 SLC35B3Q9H1N7 401 aa10.75□□□□□ -0.69
USP4-212ENST00000486549 HRH4Q9H3N8 390 aa10.75□□□□□ -0.69
USP4-212ENST00000486549 ZNF331Q9NQX6 463 aaPredicted RBP10.75□□□□□ -0.69
USP4-212ENST00000486549 CNN1P51911 297 aaKnown RBP10.74□□□□□ -0.69
USP4-212ENST00000486549 PSG9Q00887 426 aa10.74□□□□□ -0.69
USP4-212ENST00000486549 HIST1H1AQ02539 215 aaPredicted RBP10.74□□□□□ -0.69
USP4-212ENST00000486549 BLNKQ8WV28 456 aa10.74□□□□□ -0.69
USP4-212ENST00000486549 MRPL32Q9BYC8 188 aaKnown RBP10.74□□□□□ -0.69
USP4-212ENST00000486549 PARD6GQ9BYG4 376 aaPredicted RBP10.74□□□□□ -0.69
USP4-212ENST00000486549 ZNF586Q9NXT0 402 aa10.74□□□□□ -0.69
USP4-212ENST00000486549 KMT2CQ8NEZ4 4911 aaKnown RBP10.73□□□□□ -0.69
USP4-212ENST00000486549 ZNF705FA8MVS1 300 aaPredicted RBP10.73□□□□□ -0.69
USP4-212ENST00000486549 SMLR1H3BR10 107 aa10.73□□□□□ -0.69
USP4-212ENST00000486549 DEFB4AO15263 64 aa10.73□□□□□ -0.69
USP4-212ENST00000486549 DUSP14O95147 198 aaKnown RBP10.73□□□□□ -0.69
USP4-212ENST00000486549 ZNF266Q14584 549 aa10.73□□□□□ -0.69
USP4-212ENST00000486549 GUK1Q16774 197 aa10.73□□□□□ -0.69
USP4-212ENST00000486549 HSD17B11Q8NBQ5 300 aa10.73□□□□□ -0.69
USP4-212ENST00000486549 CSNK1G2-AS1Q8NCQ2 148 aa10.73□□□□□ -0.69
USP4-212ENST00000486549 RPUSD4Q96CM3 377 aaKnown RBP10.73□□□□□ -0.69
USP4-212ENST00000486549 TMEM14CQ9P0S9 112 aa10.73□□□□□ -0.69
USP4-212ENST00000486549 TNFSF18Q9UNG2 199 aa10.73□□□□□ -0.69
USP4-212ENST00000486549 FUT9Q9Y231 359 aa10.73□□□□□ -0.69
USP4-212ENST00000486549 RNF222A6NCQ9 220 aa10.72□□□□□ -0.69
USP4-212ENST00000486549 G3V3Q6 166 aa10.72□□□□□ -0.69
USP4-212ENST00000486549 OR8A1Q8NGG7 326 aa10.72□□□□□ -0.69
USP4-212ENST00000486549 SAT2Q96F10 170 aaPredicted RBP10.72□□□□□ -0.69
USP4-212ENST00000486549 FAM167A-AS1Q96KT0 104 aa10.72□□□□□ -0.69
USP4-212ENST00000486549 CLUHP3Q96NS8 147 aa10.72□□□□□ -0.69
USP4-212ENST00000486549 TIMM9Q9Y5J7 89 aa10.72□□□□□ -0.69
USP4-212ENST00000486549 TRBV19A0A075B6N1 114 aa10.71□□□□□ -0.69
USP4-212ENST00000486549 IGHV3OR16-12A0A075B7B8 117 aa10.71□□□□□ -0.69
USP4-212ENST00000486549 ARPC5O15511 151 aa10.71□□□□□ -0.69
USP4-212ENST00000486549 OR7C2O60412 319 aa10.71□□□□□ -0.69
USP4-212ENST00000486549 EIF3GO75821 320 aaKnown RBP eCLIP10.71□□□□□ -0.69
USP4-212ENST00000486549 OR10J4P0C629 311 aa10.71□□□□□ -0.69
USP4-212ENST00000486549 HIST1H1EP10412 219 aaKnown RBP10.71□□□□□ -0.69
USP4-212ENST00000486549 RHOBP62745 196 aa10.71□□□□□ -0.69
USP4-212ENST00000486549 PMS2P11Q13670 270 aa10.71□□□□□ -0.69
USP4-212ENST00000486549 SPINK13Q1W4C9 94 aa10.71□□□□□ -0.69
USP4-212ENST00000486549 AMTNQ6UX39 209 aa10.71□□□□□ -0.69
USP4-212ENST00000486549 PAXXQ9BUH6 204 aa10.71□□□□□ -0.69
USP4-212ENST00000486549 OR51M1Q9H341 326 aa10.71□□□□□ -0.69
USP4-212ENST00000486549 PPP1R14DQ9NXH3 145 aa10.71□□□□□ -0.69
USP4-212ENST00000486549 X6R8D5 127 aa10.71□□□□□ -0.69
USP4-212ENST00000486549 IGHV4-28A0A0C4DH34 117 aa10.7□□□□□ -0.7
USP4-212ENST00000486549 LCE6AA0A183 80 aa10.7□□□□□ -0.7
USP4-212ENST00000486549 ZNF705EA8MWA4 302 aaPredicted RBP10.7□□□□□ -0.7
USP4-212ENST00000486549 PRAC2D3DTV9 90 aa10.7□□□□□ -0.7
USP4-212ENST00000486549 M0R2Z0 102 aa10.7□□□□□ -0.7
USP4-212ENST00000486549 RAB2AP61019 212 aa10.7□□□□□ -0.7
USP4-212ENST00000486549 ACOT6Q3I5F7 207 aaPredicted RBP10.7□□□□□ -0.7
USP4-212ENST00000486549 FAM122CQ6P4D5 195 aa10.7□□□□□ -0.7
USP4-212ENST00000486549 Q8NAQ8 132 aa10.7□□□□□ -0.7
USP4-212ENST00000486549 C11orf68Q9H3H3 251 aaKnown RBP10.7□□□□□ -0.7
USP4-212ENST00000486549 STARD9Q9P2P6 4700 aa10.7□□□□□ -0.7
USP4-212ENST00000486549 CXorf65A6NEN9 183 aa10.69□□□□□ -0.7
USP4-212ENST00000486549 A8MTW9 85 aa10.69□□□□□ -0.7
USP4-212ENST00000486549 ZNF253O75346 499 aa10.69□□□□□ -0.7
USP4-212ENST00000486549 JTBO76095 146 aa10.69□□□□□ -0.7
USP4-212ENST00000486549 NDUFB4O95168 129 aa10.69□□□□□ -0.7
USP4-212ENST00000486549 MIFP14174 115 aa10.69□□□□□ -0.7
USP4-212ENST00000486549 ATP6V0CP27449 155 aa10.69□□□□□ -0.7
USP4-212ENST00000486549 RPL7L1Q6DKI1 246 aaKnown RBP10.69□□□□□ -0.7
USP4-212ENST00000486549 EXOC3-AS1Q8N2X6 119 aa10.69□□□□□ -0.7
USP4-212ENST00000486549 FXYD5Q96DB9 178 aa10.69□□□□□ -0.7
USP4-212ENST00000486549 CSMD3Q7Z407 3707 aa10.69□□□□□ -0.7
USP4-212ENST00000486549 BORCS7-ASMTA0A0B4J1R7 106 aa10.68□□□□□ -0.7
USP4-212ENST00000486549 A0A1W2PPV4 95 aa10.68□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms