RNA–Protein interactions for RNA: ENST00000485792.1

CUX1-208, Transcript of cut like homeobox 1, human

TSL 5

Gene CUX1, Length 564 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CUX1-208	ENST00000485792	BAX	Q07812	192 aa		4.14	□□□□□ -1.75
CUX1-208	ENST00000485792	SLC38A11	Q08AI6	406 aa		4.14	□□□□□ -1.75
CUX1-208	ENST00000485792	OPCML	Q14982	345 aa		4.14	□□□□□ -1.75
CUX1-208	ENST00000485792	OXA1L	Q15070	435 aa		4.14	□□□□□ -1.75
CUX1-208	ENST00000485792	RBMY1F	Q15415	496 aa	Known RBP	4.14	□□□□□ -1.75
CUX1-208	ENST00000485792		Q5BKY6	102 aa		4.14	□□□□□ -1.75
CUX1-208	ENST00000485792	SPATA31B1P	Q5VZV4	182 aa		4.14	□□□□□ -1.75
CUX1-208	ENST00000485792	MORN3	Q6PF18	240 aa	Predicted RBP	4.14	□□□□□ -1.75
CUX1-208	ENST00000485792	ZNF705A	Q6ZN79	300 aa	Predicted RBP	4.14	□□□□□ -1.75
CUX1-208	ENST00000485792	ZNF546	Q86UE3	836 aa		4.14	□□□□□ -1.75
CUX1-208	ENST00000485792	OR8I2	Q8N0Y5	310 aa		4.14	□□□□□ -1.75
CUX1-208	ENST00000485792		Q8NAQ8	132 aa		4.14	□□□□□ -1.75
CUX1-208	ENST00000485792	STXBP6	Q8NFX7	210 aa		4.14	□□□□□ -1.75
CUX1-208	ENST00000485792	OR1B1	Q8NGR6	318 aa		4.14	□□□□□ -1.75
CUX1-208	ENST00000485792	PPP1R1C	Q8WVI7	109 aa		4.14	□□□□□ -1.75
CUX1-208	ENST00000485792	UHRF2	Q96PU4	802 aa		4.14	□□□□□ -1.75
CUX1-208	ENST00000485792	NEU1	Q99519	415 aa		4.14	□□□□□ -1.75
CUX1-208	ENST00000485792	SCRT1	Q9BWW7	348 aa		4.14	□□□□□ -1.75
CUX1-208	ENST00000485792	PARD6G	Q9BYG4	376 aa	Predicted RBP	4.14	□□□□□ -1.75
CUX1-208	ENST00000485792	C11orf68	Q9H3H3	251 aa	Known RBP	4.14	□□□□□ -1.75
CUX1-208	ENST00000485792	SAV1	Q9H4B6	383 aa	Predicted RBP	4.14	□□□□□ -1.75
CUX1-208	ENST00000485792	MGAT4C	Q9UBM8	478 aa		4.14	□□□□□ -1.75
CUX1-208	ENST00000485792	LSM5	Q9Y4Y9	91 aa	Known RBP	4.14	□□□□□ -1.75
CUX1-208	ENST00000485792		A0A0J9YX75	114 aa		4.13	□□□□□ -1.75
CUX1-208	ENST00000485792	KNCN	A6PVL3	124 aa		4.13	□□□□□ -1.75
CUX1-208	ENST00000485792	ZNF705F	A8MVS1	300 aa	Predicted RBP	4.13	□□□□□ -1.75
CUX1-208	ENST00000485792	FAM25E	A8MYX2	175 aa		4.13	□□□□□ -1.75
CUX1-208	ENST00000485792		F6UB75	175 aa		4.13	□□□□□ -1.75
CUX1-208	ENST00000485792	SLC17A3	O00476	420 aa		4.13	□□□□□ -1.75
CUX1-208	ENST00000485792	GOSR2	O14653	212 aa		4.13	□□□□□ -1.75
CUX1-208	ENST00000485792	ZNF253	O75346	499 aa		4.13	□□□□□ -1.75
CUX1-208	ENST00000485792	EIF3G	O75821	320 aa	Known RBP eCLIP	4.13	□□□□□ -1.75
CUX1-208	ENST00000485792	SCGB1D2	O95969	90 aa		4.13	□□□□□ -1.75
CUX1-208	ENST00000485792	ZNF705D	P0CH99	300 aa	Predicted RBP	4.13	□□□□□ -1.75
CUX1-208	ENST00000485792	ZNF705B	P0CI00	300 aa	Predicted RBP	4.13	□□□□□ -1.75
CUX1-208	ENST00000485792	RPL7	P18124	248 aa	Known RBP	4.13	□□□□□ -1.75
CUX1-208	ENST00000485792	ORM2	P19652	201 aa		4.13	□□□□□ -1.75
CUX1-208	ENST00000485792	CXCL2	P19875	107 aa		4.13	□□□□□ -1.75
CUX1-208	ENST00000485792	PVALB	P20472	110 aa	Predicted RBP	4.13	□□□□□ -1.75
CUX1-208	ENST00000485792	CAMLG	P49069	296 aa		4.13	□□□□□ -1.75
CUX1-208	ENST00000485792	CAV2	P51636	162 aa		4.13	□□□□□ -1.75
CUX1-208	ENST00000485792	RRAS2	P62070	204 aa	Predicted RBP	4.13	□□□□□ -1.75
CUX1-208	ENST00000485792	SNRPD3	P62318	126 aa	Known RBP	4.13	□□□□□ -1.75
CUX1-208	ENST00000485792	HBG1	P69891	147 aa		4.13	□□□□□ -1.75
CUX1-208	ENST00000485792	HBG2	P69892	147 aa		4.13	□□□□□ -1.75
CUX1-208	ENST00000485792	ODF1	Q14990	250 aa		4.13	□□□□□ -1.75
CUX1-208	ENST00000485792	DEFB135	Q30KP9	77 aa		4.13	□□□□□ -1.75
CUX1-208	ENST00000485792	GCSAML	Q5JQS6	135 aa		4.13	□□□□□ -1.75
CUX1-208	ENST00000485792	IGFL4	Q6B9Z1	124 aa		4.13	□□□□□ -1.75
CUX1-208	ENST00000485792	FOXI2	Q6ZQN5	318 aa		4.13	□□□□□ -1.75
CUX1-208	ENST00000485792	OR11H7	Q8NGC8	314 aa		4.13	□□□□□ -1.75
CUX1-208	ENST00000485792	IL17D	Q8TAD2	202 aa		4.13	□□□□□ -1.75
CUX1-208	ENST00000485792	ASB13	Q8WXK3	278 aa		4.13	□□□□□ -1.75
CUX1-208	ENST00000485792	FAM167A-AS1	Q96KT0	104 aa		4.13	□□□□□ -1.75
CUX1-208	ENST00000485792	RSG1	Q9BU20	258 aa		4.13	□□□□□ -1.75
CUX1-208	ENST00000485792	PBDC1	Q9BVG4	233 aa		4.13	□□□□□ -1.75
CUX1-208	ENST00000485792	TMEM147	Q9BVK8	224 aa		4.13	□□□□□ -1.75
CUX1-208	ENST00000485792	KRTAP4-9	Q9BYQ8	210 aa		4.13	□□□□□ -1.75
CUX1-208	ENST00000485792	ARV1	Q9H2C2	271 aa		4.13	□□□□□ -1.75
CUX1-208	ENST00000485792	HRH4	Q9H3N8	390 aa		4.13	□□□□□ -1.75
CUX1-208	ENST00000485792	DNAJC4	Q9NNZ3	241 aa		4.13	□□□□□ -1.75
CUX1-208	ENST00000485792	ZNF331	Q9NQX6	463 aa	Predicted RBP	4.13	□□□□□ -1.75
CUX1-208	ENST00000485792	UQCC1	Q9NVA1	299 aa		4.13	□□□□□ -1.75
CUX1-208	ENST00000485792	HIGD1A	Q9Y241	93 aa		4.13	□□□□□ -1.75
CUX1-208	ENST00000485792	ALG5	Q9Y673	324 aa		4.13	□□□□□ -1.75
CUX1-208	ENST00000485792		L7N2F9	121 aa		4.12	□□□□□ -1.75
CUX1-208	ENST00000485792	CRX	O43186	299 aa	Predicted RBP	4.12	□□□□□ -1.75
CUX1-208	ENST00000485792	SNRPC	P09234	159 aa	Known RBP	4.12	□□□□□ -1.75
CUX1-208	ENST00000485792	OR5G3	P0C626	314 aa		4.12	□□□□□ -1.75
CUX1-208	ENST00000485792	GYPE	P15421	78 aa		4.12	□□□□□ -1.75
CUX1-208	ENST00000485792	RPL35A	P18077	110 aa	Known RBP	4.12	□□□□□ -1.75
CUX1-208	ENST00000485792	S100A7	P31151	101 aa		4.12	□□□□□ -1.75
CUX1-208	ENST00000485792	GALR1	P47211	349 aa		4.12	□□□□□ -1.75
CUX1-208	ENST00000485792	VAMP2	P63027	116 aa		4.12	□□□□□ -1.75
CUX1-208	ENST00000485792	PSMG4	Q5JS54	123 aa		4.12	□□□□□ -1.75
CUX1-208	ENST00000485792	ACTL10	Q5JWF8	245 aa		4.12	□□□□□ -1.75
CUX1-208	ENST00000485792	MIC13	Q5XKP0	118 aa		4.12	□□□□□ -1.75
CUX1-208	ENST00000485792	LINC00305	Q7Z4B0	112 aa		4.12	□□□□□ -1.75
CUX1-208	ENST00000485792	STX12	Q86Y82	276 aa		4.12	□□□□□ -1.75
CUX1-208	ENST00000485792	STH	Q8IWL8	128 aa		4.12	□□□□□ -1.75
CUX1-208	ENST00000485792	TMEM217	Q8N7C4	229 aa		4.12	□□□□□ -1.75
CUX1-208	ENST00000485792	OR5C1	Q8NGR4	320 aa		4.12	□□□□□ -1.75
CUX1-208	ENST00000485792	SVIP	Q8NHG7	77 aa		4.12	□□□□□ -1.75
CUX1-208	ENST00000485792	NPCDR1	Q9BY65	106 aa		4.12	□□□□□ -1.75
CUX1-208	ENST00000485792	WDR61	Q9GZS3	305 aa	Known RBP	4.12	□□□□□ -1.75
CUX1-208	ENST00000485792	SLC25A31	Q9H0C2	315 aa		4.12	□□□□□ -1.75
CUX1-208	ENST00000485792	ARL6	Q9H0F7	186 aa		4.12	□□□□□ -1.75
CUX1-208	ENST00000485792	WFDC1	Q9HC57	220 aa		4.12	□□□□□ -1.75
CUX1-208	ENST00000485792	SLC39A9	Q9NUM3	307 aa		4.12	□□□□□ -1.75
CUX1-208	ENST00000485792	TMEM14C	Q9P0S9	112 aa		4.12	□□□□□ -1.75
CUX1-208	ENST00000485792	DOK5	Q9P104	306 aa		4.12	□□□□□ -1.75
CUX1-208	ENST00000485792	PAIP2B	Q9ULR5	123 aa	Known RBP	4.12	□□□□□ -1.75
CUX1-208	ENST00000485792	RNF24	Q9Y225	148 aa		4.12	□□□□□ -1.75
CUX1-208	ENST00000485792	HSPB11	Q9Y547	144 aa		4.12	□□□□□ -1.75
CUX1-208	ENST00000485792	PKHD1	P08F94	4074 aa		4.12	□□□□□ -1.75
CUX1-208	ENST00000485792	PKD1	P98161	4303 aa		4.11	□□□□□ -1.75
CUX1-208	ENST00000485792	KIAA1109	Q2LD37	5005 aa		4.11	□□□□□ -1.75
CUX1-208	ENST00000485792		A0A0J9YWU9	116 aa		4.11	□□□□□ -1.75
CUX1-208	ENST00000485792		H3BQ15	152 aa		4.11	□□□□□ -1.75
CUX1-208	ENST00000485792	NDUFB4	O95168	129 aa		4.11	□□□□□ -1.75

Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms