RNA–Protein interactions for RNA: ENST00000484246.5

UPF3A-208, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3A, Length 699 nt, Biotype processed transcript.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-208ENST00000484246 TMEM14CQ9P0S9 112 aa11.63□□□□□ -0.55
UPF3A-208ENST00000484246 RNF222A6NCQ9 220 aa11.62□□□□□ -0.55
UPF3A-208ENST00000484246 ZNF253O75346 499 aa11.62□□□□□ -0.55
UPF3A-208ENST00000484246 C4BPBP20851 252 aa11.62□□□□□ -0.55
UPF3A-208ENST00000484246 ZNF266Q14584 549 aa11.62□□□□□ -0.55
UPF3A-208ENST00000484246 SCGB1C1Q8TD33 95 aa11.62□□□□□ -0.55
UPF3A-208ENST00000484246 LINC00052Q96N35 136 aa11.62□□□□□ -0.55
UPF3A-208ENST00000484246 MRPL32Q9BYC8 188 aaKnown RBP11.62□□□□□ -0.55
UPF3A-208ENST00000484246 SMIM3Q9BZL3 60 aa11.62□□□□□ -0.55
UPF3A-208ENST00000484246 TNFSF18Q9UNG2 199 aa11.62□□□□□ -0.55
UPF3A-208ENST00000484246 TIMM9Q9Y5J7 89 aa11.62□□□□□ -0.55
UPF3A-208ENST00000484246 A0A0J9YX75 114 aa11.61□□□□□ -0.55
UPF3A-208ENST00000484246 GCSAMLQ5JQS6 135 aa11.61□□□□□ -0.55
UPF3A-208ENST00000484246 GDF5OSQ5U4N7 250 aa11.61□□□□□ -0.55
UPF3A-208ENST00000484246 ZNF331Q9NQX6 463 aaPredicted RBP11.61□□□□□ -0.55
UPF3A-208ENST00000484246 CLEC5AQ9NY25 188 aa11.61□□□□□ -0.55
UPF3A-208ENST00000484246 NUTF2P61970 127 aaKnown RBP11.6□□□□□ -0.55
UPF3A-208ENST00000484246 FAM78BQ5VT40 261 aa11.6□□□□□ -0.55
UPF3A-208ENST00000484246 EBLN2Q6P2I7 272 aa11.6□□□□□ -0.55
UPF3A-208ENST00000484246 SAT2Q96F10 170 aaPredicted RBP11.6□□□□□ -0.55
UPF3A-208ENST00000484246 FAM167A-AS1Q96KT0 104 aa11.6□□□□□ -0.55
UPF3A-208ENST00000484246 C1QTNF4Q9BXJ3 329 aa11.6□□□□□ -0.55
UPF3A-208ENST00000484246 PGPEP1Q9NXJ5 209 aa11.6□□□□□ -0.55
UPF3A-208ENST00000484246 TRAV5A0A0B4J249 113 aa11.59□□□□□ -0.55
UPF3A-208ENST00000484246 H3BQ15 152 aa11.59□□□□□ -0.55
UPF3A-208ENST00000484246 PDE6HQ13956 83 aa11.59□□□□□ -0.55
UPF3A-208ENST00000484246 INO80EQ8NBZ0 244 aaPredicted RBP11.59□□□□□ -0.55
UPF3A-208ENST00000484246 CSNK1G2-AS1Q8NCQ2 148 aa11.59□□□□□ -0.55
UPF3A-208ENST00000484246 MUC7Q8TAX7 377 aa11.59□□□□□ -0.55
UPF3A-208ENST00000484246 FXYD6-FXYD2A0A087WZ82 144 aa11.58□□□□□ -0.56
UPF3A-208ENST00000484246 ZNF705EA8MWA4 302 aaPredicted RBP11.58□□□□□ -0.56
UPF3A-208ENST00000484246 C3orf84H3BNL1 204 aa11.58□□□□□ -0.56
UPF3A-208ENST00000484246 HIST1H1EP10412 219 aaKnown RBP11.58□□□□□ -0.56
UPF3A-208ENST00000484246 DEFB1P60022 68 aa11.58□□□□□ -0.56
UPF3A-208ENST00000484246 PSG3Q16557 428 aa11.58□□□□□ -0.56
UPF3A-208ENST00000484246 FFAR4Q5NUL3 377 aa11.58□□□□□ -0.56
UPF3A-208ENST00000484246 RNF182Q8N6D2 247 aa11.58□□□□□ -0.56
UPF3A-208ENST00000484246 OR2G3Q8NGZ4 309 aa11.58□□□□□ -0.56
UPF3A-208ENST00000484246 PSMG3Q9BT73 122 aaPredicted RBP11.58□□□□□ -0.56
UPF3A-208ENST00000484246 SLC25A2Q9BXI2 301 aa11.58□□□□□ -0.56
UPF3A-208ENST00000484246 FUT9Q9Y231 359 aa11.58□□□□□ -0.56
UPF3A-208ENST00000484246 TRBV19A0A075B6N1 114 aa11.57□□□□□ -0.56
UPF3A-208ENST00000484246 F6UB75 175 aa11.57□□□□□ -0.56
UPF3A-208ENST00000484246 SLC17A3O00476 420 aa11.57□□□□□ -0.56
UPF3A-208ENST00000484246 DUSP14O95147 198 aaKnown RBP11.57□□□□□ -0.56
UPF3A-208ENST00000484246 AMTNQ6UX39 209 aa11.57□□□□□ -0.56
UPF3A-208ENST00000484246 MIR17HGQ75NE6 70 aa11.57□□□□□ -0.56
UPF3A-208ENST00000484246 ZNF738Q8NE65 137 aa11.57□□□□□ -0.56
UPF3A-208ENST00000484246 LRRC20Q8TCA0 184 aa11.57□□□□□ -0.56
UPF3A-208ENST00000484246 MRPL53Q96EL3 112 aaKnown RBP11.57□□□□□ -0.56
UPF3A-208ENST00000484246 C11orf68Q9H3H3 251 aaKnown RBP11.57□□□□□ -0.56
UPF3A-208ENST00000484246 ZNF586Q9NXT0 402 aa11.57□□□□□ -0.56
UPF3A-208ENST00000484246 M6PRP20645 277 aa11.56□□□□□ -0.56
UPF3A-208ENST00000484246 RHOBP62745 196 aa11.56□□□□□ -0.56
UPF3A-208ENST00000484246 PSG9Q00887 426 aa11.56□□□□□ -0.56
UPF3A-208ENST00000484246 IGFL4Q6B9Z1 124 aa11.56□□□□□ -0.56
UPF3A-208ENST00000484246 OR8A1Q8NGG7 326 aa11.56□□□□□ -0.56
UPF3A-208ENST00000484246 OR11H2Q8NH07 326 aa11.56□□□□□ -0.56
UPF3A-208ENST00000484246 RARRES2Q99969 163 aa11.56□□□□□ -0.56
UPF3A-208ENST00000484246 HLA-DMBP28068 263 aa11.55□□□□□ -0.56
UPF3A-208ENST00000484246 CNN1P51911 297 aaKnown RBP11.55□□□□□ -0.56
UPF3A-208ENST00000484246 ACOT6Q3I5F7 207 aaPredicted RBP11.55□□□□□ -0.56
UPF3A-208ENST00000484246 IL17DQ8TAD2 202 aa11.55□□□□□ -0.56
UPF3A-208ENST00000484246 RPUSD4Q96CM3 377 aaKnown RBP11.55□□□□□ -0.56
UPF3A-208ENST00000484246 TAAR5O14804 337 aa11.54□□□□□ -0.56
UPF3A-208ENST00000484246 NDUFB4O95168 129 aa11.54□□□□□ -0.56
UPF3A-208ENST00000484246 AMBPP02760 352 aa11.54□□□□□ -0.56
UPF3A-208ENST00000484246 PYYP10082 97 aa11.54□□□□□ -0.56
UPF3A-208ENST00000484246 ATP6V0CP27449 155 aa11.54□□□□□ -0.56
UPF3A-208ENST00000484246 TAS2R45P59539 299 aa11.54□□□□□ -0.56
UPF3A-208ENST00000484246 SERF2P84101 59 aa11.54□□□□□ -0.56
UPF3A-208ENST00000484246 ZNF345Q14585 488 aa11.54□□□□□ -0.56
UPF3A-208ENST00000484246 Q6ZNX1 250 aa11.54□□□□□ -0.56
UPF3A-208ENST00000484246 OR4B1Q8NGF8 309 aa11.54□□□□□ -0.56
UPF3A-208ENST00000484246 FXYD5Q96DB9 178 aa11.54□□□□□ -0.56
UPF3A-208ENST00000484246 OR51M1Q9H341 326 aa11.54□□□□□ -0.56
UPF3A-208ENST00000484246 PRELID1Q9Y255 219 aa11.54□□□□□ -0.56
UPF3A-208ENST00000484246 DNAH7Q8WXX0 4024 aa11.54□□□□□ -0.56
UPF3A-208ENST00000484246 BORCS7-ASMTA0A0B4J1R7 106 aa11.53□□□□□ -0.56
UPF3A-208ENST00000484246 A0A0J9YWU9 116 aa11.53□□□□□ -0.56
UPF3A-208ENST00000484246 HMSDA8MTL9 139 aa11.53□□□□□ -0.56
UPF3A-208ENST00000484246 H3BTX0 84 aa11.53□□□□□ -0.56
UPF3A-208ENST00000484246 ARPC5O15511 151 aa11.53□□□□□ -0.56
UPF3A-208ENST00000484246 MIFP14174 115 aa11.53□□□□□ -0.56
UPF3A-208ENST00000484246 KHDC3LQ587J8 217 aa11.53□□□□□ -0.56
UPF3A-208ENST00000484246 ZNF705AQ6ZN79 300 aaPredicted RBP11.53□□□□□ -0.56
UPF3A-208ENST00000484246 Q8NAQ8 132 aa11.53□□□□□ -0.56
UPF3A-208ENST00000484246 GNPNAT1Q96EK6 184 aaPredicted RBP11.53□□□□□ -0.56
UPF3A-208ENST00000484246 ZNF503Q96F45 646 aa11.53□□□□□ -0.56
UPF3A-208ENST00000484246 NEU1Q99519 415 aa11.53□□□□□ -0.56
UPF3A-208ENST00000484246 PAXXQ9BUH6 204 aa11.53□□□□□ -0.56
UPF3A-208ENST00000484246 MFFQ9GZY8 342 aa11.53□□□□□ -0.56
UPF3A-208ENST00000484246 SLC35B3Q9H1N7 401 aa11.53□□□□□ -0.56
UPF3A-208ENST00000484246 XCL2Q9UBD3 114 aa11.53□□□□□ -0.56
UPF3A-208ENST00000484246 X6R8D5 127 aa11.53□□□□□ -0.56
UPF3A-208ENST00000484246 ZNF705FA8MVS1 300 aaPredicted RBP11.52□□□□□ -0.57
UPF3A-208ENST00000484246 IGKV3-20P01619 116 aa11.52□□□□□ -0.57
UPF3A-208ENST00000484246 SNRPCP09234 159 aaKnown RBP11.52□□□□□ -0.57
UPF3A-208ENST00000484246 NBEAP1P0C6P0 100 aa11.52□□□□□ -0.57
UPF3A-208ENST00000484246 ZNF705DP0CH99 300 aaPredicted RBP11.52□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 271.9 ms