RNA–Protein interactions for RNA: ENST00000483519.5

USP40-214, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 1 (best)

Gene USP40, Length 2,722 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-214ENST00000483519 TNFRSF1AP19438 455 aa10.57□□□□□ -0.72
USP40-214ENST00000483519 CEACAM3P40198 252 aa10.57□□□□□ -0.72
USP40-214ENST00000483519 LGALS7P47929 136 aa10.57□□□□□ -0.72
USP40-214ENST00000483519 ZNF493Q6ZR52 646 aa10.57□□□□□ -0.72
USP40-214ENST00000483519 C8orf31Q8N9H6 132 aa10.57□□□□□ -0.72
USP40-214ENST00000483519 CITED1Q99966 193 aa10.57□□□□□ -0.72
USP40-214ENST00000483519 SLC25A39Q9BZJ4 359 aaPredicted RBP10.57□□□□□ -0.72
USP40-214ENST00000483519 HILPDAQ9Y5L2 63 aa10.57□□□□□ -0.72
USP40-214ENST00000483519 IGF2RP11717 2491 aa10.56□□□□□ -0.72
USP40-214ENST00000483519 INTS1Q8N201 2190 aaKnown RBP10.56□□□□□ -0.72
USP40-214ENST00000483519 TPRP12270 2363 aaKnown RBP10.56□□□□□ -0.72
USP40-214ENST00000483519 A0A096LNJ9 63 aa10.56□□□□□ -0.72
USP40-214ENST00000483519 TGFAP01135 160 aa10.56□□□□□ -0.72
USP40-214ENST00000483519 RPL27AP46776 148 aaKnown RBP10.56□□□□□ -0.72
USP40-214ENST00000483519 CACNG7P62955 275 aa10.56□□□□□ -0.72
USP40-214ENST00000483519 DIAPH2-AS1Q14236 149 aa10.56□□□□□ -0.72
USP40-214ENST00000483519 ZNF479Q96JC4 524 aa10.56□□□□□ -0.72
USP40-214ENST00000483519 A0A1W2PPM0 123 aa10.56□□□□□ -0.72
USP40-214ENST00000483519 SMIM17P0DL12 118 aa10.56□□□□□ -0.72
USP40-214ENST00000483519 DEFB109BQ30KR1 87 aa10.56□□□□□ -0.72
USP40-214ENST00000483519 TPPP3Q9BW30 176 aa10.56□□□□□ -0.72
USP40-214ENST00000483519 SIGLEC8Q9NYZ4 499 aa10.56□□□□□ -0.72
USP40-214ENST00000483519 SPCS1Q9Y6A9 102 aa10.56□□□□□ -0.72
USP40-214ENST00000483519 ACACBO00763 2458 aa10.55□□□□□ -0.72
USP40-214ENST00000483519 AKAP13Q12802 2813 aa10.55□□□□□ -0.72
USP40-214ENST00000483519 IGHV3-21A0A0B4J1V1 117 aa10.55□□□□□ -0.72
USP40-214ENST00000483519 TMEM200BQ69YZ2 307 aa10.55□□□□□ -0.72
USP40-214ENST00000483519 ADAMTSL5Q6ZMM2 481 aa10.55□□□□□ -0.72
USP40-214ENST00000483519 ZNF414Q96IQ9 312 aa10.55□□□□□ -0.72
USP40-214ENST00000483519 LOC389332A0A1B0GUA5 103 aa10.55□□□□□ -0.72
USP40-214ENST00000483519 D6R8Y8 96 aa10.55□□□□□ -0.72
USP40-214ENST00000483519 HBDP02042 147 aa10.55□□□□□ -0.72
USP40-214ENST00000483519 PF4P02776 101 aa10.55□□□□□ -0.72
USP40-214ENST00000483519 FAM106CPP0CH98 169 aa10.55□□□□□ -0.72
USP40-214ENST00000483519 FAM106AQ4KMX7 169 aa10.55□□□□□ -0.72
USP40-214ENST00000483519 TMEM108Q6UXF1 575 aa10.55□□□□□ -0.72
USP40-214ENST00000483519 ORMDL3Q8N138 153 aa10.55□□□□□ -0.72
USP40-214ENST00000483519 PIP4P2Q8N4L2 257 aa10.55□□□□□ -0.72
USP40-214ENST00000483519 PRELID3AQ96N28 172 aa10.55□□□□□ -0.72
USP40-214ENST00000483519 PSG8Q9UQ74 426 aa10.55□□□□□ -0.72
USP40-214ENST00000483519 TRAV17A0A0B4J275 112 aa10.54□□□□□ -0.72
USP40-214ENST00000483519 ZNF785A8K8V0 405 aa10.54□□□□□ -0.72
USP40-214ENST00000483519 ENSAO43768 121 aaKnown RBP10.54□□□□□ -0.72
USP40-214ENST00000483519 CCL11P51671 97 aa10.54□□□□□ -0.72
USP40-214ENST00000483519 MRGPRG-AS1Q2M3A8 158 aa10.54□□□□□ -0.72
USP40-214ENST00000483519 RAB37Q96AX2 223 aa10.54□□□□□ -0.72
USP40-214ENST00000483519 NAA38Q9BRA0 125 aaKnown RBP10.54□□□□□ -0.72
USP40-214ENST00000483519 U3KQK5 164 aa10.54□□□□□ -0.72
USP40-214ENST00000483519 CHD8Q9HCK8 2581 aa10.54□□□□□ -0.72
USP40-214ENST00000483519 MBD3L4A6NDZ8 208 aaPredicted RBP10.54□□□□□ -0.72
USP40-214ENST00000483519 MBD3L3A6NE82 208 aaPredicted RBP10.54□□□□□ -0.72
USP40-214ENST00000483519 MBD3L5A6NJ08 208 aaPredicted RBP10.54□□□□□ -0.72
USP40-214ENST00000483519 CT45A10P0DMU9 189 aa10.54□□□□□ -0.72
USP40-214ENST00000483519 FABP2P12104 132 aa10.54□□□□□ -0.72
USP40-214ENST00000483519 LOXL1Q08397 574 aaPredicted RBP10.54□□□□□ -0.72
USP40-214ENST00000483519 PSG3Q16557 428 aa10.54□□□□□ -0.72
USP40-214ENST00000483519 Q71RC1 249 aaPredicted RBP10.54□□□□□ -0.72
USP40-214ENST00000483519 MBD3L2Q8NHZ7 208 aaPredicted RBP10.54□□□□□ -0.72
USP40-214ENST00000483519 PRORYQ9H606 182 aa10.54□□□□□ -0.72
USP40-214ENST00000483519 TRBV19A0A075B6N1 114 aa10.53□□□□□ -0.72
USP40-214ENST00000483519 LYPD1Q8N2G4 141 aa10.53□□□□□ -0.72
USP40-214ENST00000483519 FDCSPQ8NFU4 85 aa10.53□□□□□ -0.72
USP40-214ENST00000483519 RASL11BQ9BPW5 248 aa10.53□□□□□ -0.72
USP40-214ENST00000483519 NPFFR1Q9GZQ6 430 aa10.53□□□□□ -0.72
USP40-214ENST00000483519 F11RQ9Y624 299 aaKnown RBP10.53□□□□□ -0.72
USP40-214ENST00000483519 NMUP48645 174 aa10.53□□□□□ -0.72
USP40-214ENST00000483519 FAM104BQ5XKR9 115 aa10.53□□□□□ -0.72
USP40-214ENST00000483519 IFI27L1Q96BM0 104 aa10.53□□□□□ -0.72
USP40-214ENST00000483519 PTPRQQ9UMZ3 2332 aa10.53□□□□□ -0.72
USP40-214ENST00000483519 CADP27708 2225 aa10.52□□□□□ -0.72
USP40-214ENST00000483519 APELAP0DMC3 54 aa10.52□□□□□ -0.72
USP40-214ENST00000483519 PSMG4Q5JS54 123 aa10.52□□□□□ -0.72
USP40-214ENST00000483519 ZNF474Q6S9Z5 364 aaPredicted RBP10.52□□□□□ -0.72
USP40-214ENST00000483519 RITA1Q96K30 269 aa10.52□□□□□ -0.72
USP40-214ENST00000483519 CLEC3BP05452 202 aa10.52□□□□□ -0.73
USP40-214ENST00000483519 CCL8P80075 99 aa10.52□□□□□ -0.73
USP40-214ENST00000483519 RBPJQ06330 500 aa10.52□□□□□ -0.73
USP40-214ENST00000483519 IGFL3Q6UXB1 125 aa10.52□□□□□ -0.73
USP40-214ENST00000483519 SEM1Q6ZVN7 128 aa10.52□□□□□ -0.73
USP40-214ENST00000483519 RNF125Q96EQ8 232 aa10.52□□□□□ -0.73
USP40-214ENST00000483519 PIMREGQ9BSJ6 248 aa10.51□□□□□ -0.73
USP40-214ENST00000483519 INSIG2Q9Y5U4 225 aa10.51□□□□□ -0.73
USP40-214ENST00000483519 SELENOKQ9Y6D0 94 aa10.51□□□□□ -0.73
USP40-214ENST00000483519 ANKRD11Q6UB99 2663 aaPredicted RBP10.51□□□□□ -0.73
USP40-214ENST00000483519 NDUFB3O43676 98 aa10.51□□□□□ -0.73
USP40-214ENST00000483519 SMIM13P0DJ93 91 aa10.51□□□□□ -0.73
USP40-214ENST00000483519 CRIP1P50238 77 aa10.51□□□□□ -0.73
USP40-214ENST00000483519 TCTAP57738 103 aa10.51□□□□□ -0.73
USP40-214ENST00000483519 SIGLEC15Q6ZMC9 328 aa10.51□□□□□ -0.73
USP40-214ENST00000483519 AMN1Q8IY45 258 aa10.51□□□□□ -0.73
USP40-214ENST00000483519 ARFGEF3Q5TH69 2177 aa10.51□□□□□ -0.73
USP40-214ENST00000483519 RBP4P02753 201 aa10.5□□□□□ -0.73
USP40-214ENST00000483519 SAMD5Q5TGI4 173 aa10.5□□□□□ -0.73
USP40-214ENST00000483519 LYZL1Q6UWQ5 148 aa10.5□□□□□ -0.73
USP40-214ENST00000483519 WFDC8Q8IUA0 241 aa10.5□□□□□ -0.73
USP40-214ENST00000483519 RNF152Q8N8N0 203 aa10.5□□□□□ -0.73
USP40-214ENST00000483519 SHANK2-AS3Q9BTD1 123 aa10.5□□□□□ -0.73
USP40-214ENST00000483519 IGHV3-72A0A0B4J1Y9 119 aa10.5□□□□□ -0.73
USP40-214ENST00000483519 TMEM189A5PLL7 270 aa10.5□□□□□ -0.73
USP40-214ENST00000483519 PCP2Q8IVA1 136 aa10.5□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms