RNA–Protein interactions for RNA: ENST00000478214.1

HMGA1-206, Transcript of high mobility group AT-hook 1, humanhuman

TSL 1 (best)

Gene HMGA1, Length 716 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-206ENST00000478214 C1QTNF4Q9BXJ3 329 aa11.32□□□□□ -0.6
HMGA1-206ENST00000478214 HSPB11Q9Y547 144 aa11.32□□□□□ -0.6
HMGA1-206ENST00000478214 ZNF705EA8MWA4 302 aaPredicted RBP11.31□□□□□ -0.6
HMGA1-206ENST00000478214 H3BTX0 84 aa11.31□□□□□ -0.6
HMGA1-206ENST00000478214 PMS2P11Q13670 270 aa11.31□□□□□ -0.6
HMGA1-206ENST00000478214 RGS21Q2M5E4 152 aa11.31□□□□□ -0.6
HMGA1-206ENST00000478214 GCSAMLQ5JQS6 135 aa11.31□□□□□ -0.6
HMGA1-206ENST00000478214 ZNF709Q8N972 641 aa11.31□□□□□ -0.6
HMGA1-206ENST00000478214 Q8NAQ8 132 aa11.31□□□□□ -0.6
HMGA1-206ENST00000478214 CLUHP3Q96NS8 147 aa11.31□□□□□ -0.6
HMGA1-206ENST00000478214 ATP5SQ99766 215 aa11.31□□□□□ -0.6
HMGA1-206ENST00000478214 WDR61Q9GZS3 305 aaKnown RBP11.31□□□□□ -0.6
HMGA1-206ENST00000478214 SLC35B3Q9H1N7 401 aa11.31□□□□□ -0.6
HMGA1-206ENST00000478214 C11orf68Q9H3H3 251 aaKnown RBP11.31□□□□□ -0.6
HMGA1-206ENST00000478214 X6R8D5 127 aa11.31□□□□□ -0.6
HMGA1-206ENST00000478214 RYR3Q15413 4870 aa11.31□□□□□ -0.6
HMGA1-206ENST00000478214 SACSQ9NZJ4 4579 aa11.3□□□□□ -0.6
HMGA1-206ENST00000478214 IGHV4-28A0A0C4DH34 117 aa11.3□□□□□ -0.6
HMGA1-206ENST00000478214 CXorf65A6NEN9 183 aa11.3□□□□□ -0.6
HMGA1-206ENST00000478214 H3BQ15 152 aa11.3□□□□□ -0.6
HMGA1-206ENST00000478214 ZNF705DP0CH99 300 aaPredicted RBP11.3□□□□□ -0.6
HMGA1-206ENST00000478214 ZNF705BP0CI00 300 aaPredicted RBP11.3□□□□□ -0.6
HMGA1-206ENST00000478214 IGLC2P0DOY2 106 aa11.3□□□□□ -0.6
HMGA1-206ENST00000478214 PRB4P10163 310 aaPredicted RBP11.3□□□□□ -0.6
HMGA1-206ENST00000478214 PSG9Q00887 426 aa11.3□□□□□ -0.6
HMGA1-206ENST00000478214 PSG3Q16557 428 aa11.3□□□□□ -0.6
HMGA1-206ENST00000478214 LCN15Q6UWW0 184 aa11.3□□□□□ -0.6
HMGA1-206ENST00000478214 ZNF738Q8NE65 137 aa11.3□□□□□ -0.6
HMGA1-206ENST00000478214 SMIM3Q9BZL3 60 aa11.3□□□□□ -0.6
HMGA1-206ENST00000478214 PLECQ15149 4684 aaKnown RBP11.29□□□□□ -0.6
HMGA1-206ENST00000478214 A8MTW9 85 aa11.29□□□□□ -0.6
HMGA1-206ENST00000478214 RBMY1A1P0DJD3 496 aaKnown RBP11.29□□□□□ -0.6
HMGA1-206ENST00000478214 RBMY1CP0DJD4 496 aa11.29□□□□□ -0.6
HMGA1-206ENST00000478214 CNN1P51911 297 aaKnown RBP11.29□□□□□ -0.6
HMGA1-206ENST00000478214 RBMY1FQ15415 496 aaKnown RBP11.29□□□□□ -0.6
HMGA1-206ENST00000478214 ZNF331Q9NQX6 463 aaPredicted RBP11.29□□□□□ -0.6
HMGA1-206ENST00000478214 SLC17A3O00476 420 aa11.28□□□□□ -0.6
HMGA1-206ENST00000478214 MIFP14174 115 aa11.28□□□□□ -0.6
HMGA1-206ENST00000478214 CXCL2P19875 107 aa11.28□□□□□ -0.6
HMGA1-206ENST00000478214 OXA1LQ15070 435 aa11.28□□□□□ -0.6
HMGA1-206ENST00000478214 AMTNQ6UX39 209 aa11.28□□□□□ -0.6
HMGA1-206ENST00000478214 SLC50A1Q9BRV3 221 aa11.28□□□□□ -0.6
HMGA1-206ENST00000478214 MFFQ9GZY8 342 aa11.28□□□□□ -0.6
HMGA1-206ENST00000478214 HRH4Q9H3N8 390 aa11.28□□□□□ -0.6
HMGA1-206ENST00000478214 WFDC1Q9HC57 220 aa11.28□□□□□ -0.6
HMGA1-206ENST00000478214 DUSP14O95147 198 aaKnown RBP11.27□□□□□ -0.61
HMGA1-206ENST00000478214 NANOS2P60321 138 aaKnown RBP11.27□□□□□ -0.61
HMGA1-206ENST00000478214 ZNF705AQ6ZN79 300 aaPredicted RBP11.27□□□□□ -0.61
HMGA1-206ENST00000478214 OR8A1Q8NGG7 326 aa11.27□□□□□ -0.61
HMGA1-206ENST00000478214 C11orf45Q8TAV5 145 aa11.27□□□□□ -0.61
HMGA1-206ENST00000478214 RPUSD4Q96CM3 377 aaKnown RBP11.27□□□□□ -0.61
HMGA1-206ENST00000478214 SAT2Q96F10 170 aaPredicted RBP11.27□□□□□ -0.61
HMGA1-206ENST00000478214 ZNF586Q9NXT0 402 aa11.27□□□□□ -0.61
HMGA1-206ENST00000478214 IGHV3OR16-12A0A075B7B8 117 aa11.26□□□□□ -0.61
HMGA1-206ENST00000478214 ZNF705FA8MVS1 300 aaPredicted RBP11.26□□□□□ -0.61
HMGA1-206ENST00000478214 C17orf112F2Z3M2 114 aa11.26□□□□□ -0.61
HMGA1-206ENST00000478214 IFNA5P01569 189 aa11.26□□□□□ -0.61
HMGA1-206ENST00000478214 HIST1H1AQ02539 215 aaPredicted RBP11.26□□□□□ -0.61
HMGA1-206ENST00000478214 Q5BKY6 102 aa11.26□□□□□ -0.61
HMGA1-206ENST00000478214 MIR17HGQ75NE6 70 aa11.26□□□□□ -0.61
HMGA1-206ENST00000478214 KCNIP2Q9NS61 270 aa11.26□□□□□ -0.61
HMGA1-206ENST00000478214 ALMS1Q8TCU4 4167 aa11.25□□□□□ -0.61
HMGA1-206ENST00000478214 DNAH1Q9P2D7 4330 aa11.25□□□□□ -0.61
HMGA1-206ENST00000478214 GIPP09681 153 aaPredicted RBP11.25□□□□□ -0.61
HMGA1-206ENST00000478214 PYYP10082 97 aa11.25□□□□□ -0.61
HMGA1-206ENST00000478214 GUK1Q16774 197 aa11.25□□□□□ -0.61
HMGA1-206ENST00000478214 C1orf158Q8N1D5 194 aa11.25□□□□□ -0.61
HMGA1-206ENST00000478214 SCGB1C1Q8TD33 95 aa11.25□□□□□ -0.61
HMGA1-206ENST00000478214 FAM167A-AS1Q96KT0 104 aa11.25□□□□□ -0.61
HMGA1-206ENST00000478214 SLC25A2Q9BXI2 301 aa11.25□□□□□ -0.61
HMGA1-206ENST00000478214 TMEM14CQ9P0S9 112 aa11.25□□□□□ -0.61
HMGA1-206ENST00000478214 RYR2Q92736 4967 aa11.25□□□□□ -0.61
HMGA1-206ENST00000478214 PRAC2D3DTV9 90 aa11.24□□□□□ -0.61
HMGA1-206ENST00000478214 M0R2Z0 102 aa11.24□□□□□ -0.61
HMGA1-206ENST00000478214 RHOBP62745 196 aa11.24□□□□□ -0.61
HMGA1-206ENST00000478214 SPINK13Q1W4C9 94 aa11.24□□□□□ -0.61
HMGA1-206ENST00000478214 FFAR4Q5NUL3 377 aa11.24□□□□□ -0.61
HMGA1-206ENST00000478214 CEMP1Q6PRD7 247 aaPredicted RBP11.24□□□□□ -0.61
HMGA1-206ENST00000478214 PHLDA1Q8WV24 401 aaPredicted RBP11.24□□□□□ -0.61
HMGA1-206ENST00000478214 NEU1Q99519 415 aa11.24□□□□□ -0.61
HMGA1-206ENST00000478214 RFNGQ9Y644 331 aa11.24□□□□□ -0.61
HMGA1-206ENST00000478214 TRBV19A0A075B6N1 114 aa11.23□□□□□ -0.61
HMGA1-206ENST00000478214 LCE6AA0A183 80 aa11.23□□□□□ -0.61
HMGA1-206ENST00000478214 NUPR2A6NF83 97 aa11.23□□□□□ -0.61
HMGA1-206ENST00000478214 HIST1H1EP10412 219 aaKnown RBP11.23□□□□□ -0.61
HMGA1-206ENST00000478214 IGF2BP2-AS1Q96M15 143 aa11.23□□□□□ -0.61
HMGA1-206ENST00000478214 AQP10Q96PS8 301 aa11.23□□□□□ -0.61
HMGA1-206ENST00000478214 MRPL32Q9BYC8 188 aaKnown RBP11.23□□□□□ -0.61
HMGA1-206ENST00000478214 PARD6GQ9BYG4 376 aaPredicted RBP11.23□□□□□ -0.61
HMGA1-206ENST00000478214 GOLT1BQ9Y3E0 138 aa11.23□□□□□ -0.61
HMGA1-206ENST00000478214 BOLA2-SMG1P6H3BVE0 249 aa11.22□□□□□ -0.61
HMGA1-206ENST00000478214 CRXO43186 299 aaPredicted RBP11.22□□□□□ -0.61
HMGA1-206ENST00000478214 ZNF253O75346 499 aa11.22□□□□□ -0.61
HMGA1-206ENST00000478214 NDUFB4O95168 129 aa11.22□□□□□ -0.61
HMGA1-206ENST00000478214 AMBPP02760 352 aa11.22□□□□□ -0.61
HMGA1-206ENST00000478214 BAP18Q8IXM2 172 aa11.22□□□□□ -0.61
HMGA1-206ENST00000478214 BLNKQ8WV28 456 aa11.22□□□□□ -0.61
HMGA1-206ENST00000478214 ASB13Q8WXK3 278 aa11.22□□□□□ -0.61
HMGA1-206ENST00000478214 PPP1R14DQ9NXH3 145 aa11.22□□□□□ -0.61
HMGA1-206ENST00000478214 CELA1Q9UNI1 258 aa11.22□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 76.1 ms