RNA–Protein interactions for RNA: ENST00000473405.1

CCDC88B-206, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best)

Gene CCDC88B, Length 783 nt, Biotype processed transcript, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-206ENST00000473405 ZNF705GA8MUZ8 300 aaPredicted RBP13.3□□□□□ -0.28
CCDC88B-206ENST00000473405 BOLA2-SMG1P6H3BVE0 249 aa13.3□□□□□ -0.28
CCDC88B-206ENST00000473405 RTL8CO15255 209 aa13.3□□□□□ -0.28
CCDC88B-206ENST00000473405 PLA2G10O15496 165 aa13.3□□□□□ -0.28
CCDC88B-206ENST00000473405 DAD1P61803 113 aa13.3□□□□□ -0.28
CCDC88B-206ENST00000473405 ARV1Q9H2C2 271 aa13.3□□□□□ -0.28
CCDC88B-206ENST00000473405 TRAV12-2A0A075B6T6 113 aa13.29□□□□□ -0.28
CCDC88B-206ENST00000473405 PLAC8L1A1L4L8 177 aa13.29□□□□□ -0.28
CCDC88B-206ENST00000473405 M0R2N4 97 aa13.29□□□□□ -0.28
CCDC88B-206ENST00000473405 CCSO14618 274 aa13.29□□□□□ -0.28
CCDC88B-206ENST00000473405 PRB4P10163 310 aaPredicted RBP13.29□□□□□ -0.28
CCDC88B-206ENST00000473405 HIST1H1AQ02539 215 aaPredicted RBP13.29□□□□□ -0.28
CCDC88B-206ENST00000473405 TMEM88Q6PEY1 159 aa13.29□□□□□ -0.28
CCDC88B-206ENST00000473405 ZNF546Q86UE3 836 aa13.29□□□□□ -0.28
CCDC88B-206ENST00000473405 OR8A1Q8NGG7 326 aa13.29□□□□□ -0.28
CCDC88B-206ENST00000473405 DNAH11Q96DT5 4516 aa13.28□□□□□ -0.28
CCDC88B-206ENST00000473405 AGPAT2O15120 278 aa13.28□□□□□ -0.28
CCDC88B-206ENST00000473405 TSPOP30536 169 aa13.28□□□□□ -0.28
CCDC88B-206ENST00000473405 PSG3Q16557 428 aa13.28□□□□□ -0.28
CCDC88B-206ENST00000473405 MGST2Q99735 147 aa13.28□□□□□ -0.28
CCDC88B-206ENST00000473405 GGACTQ9BVM4 153 aa13.28□□□□□ -0.28
CCDC88B-206ENST00000473405 LYRM9A8MSI8 78 aa13.27□□□□□ -0.29
CCDC88B-206ENST00000473405 LYRM1O43325 122 aa13.27□□□□□ -0.29
CCDC88B-206ENST00000473405 AZU1P20160 251 aa13.27□□□□□ -0.29
CCDC88B-206ENST00000473405 LGALS9BQ3B8N2 356 aa13.27□□□□□ -0.29
CCDC88B-206ENST00000473405 PXDC1Q5TGL8 231 aa13.27□□□□□ -0.29
CCDC88B-206ENST00000473405 MORN5Q5VZ52 161 aa13.27□□□□□ -0.29
CCDC88B-206ENST00000473405 S100A7AQ86SG5 101 aa13.27□□□□□ -0.29
CCDC88B-206ENST00000473405 DYNC1H1Q14204 4646 aaKnown RBP13.26□□□□□ -0.29
CCDC88B-206ENST00000473405 GOSR2O14653 212 aa13.26□□□□□ -0.29
CCDC88B-206ENST00000473405 CXCL2P19875 107 aa13.26□□□□□ -0.29
CCDC88B-206ENST00000473405 B2MP61769 119 aa13.26□□□□□ -0.29
CCDC88B-206ENST00000473405 Q6ZR54 194 aa13.26□□□□□ -0.29
CCDC88B-206ENST00000473405 LINC00305Q7Z4B0 112 aa13.26□□□□□ -0.29
CCDC88B-206ENST00000473405 UBE2DNLQ8IWF7 75 aa13.26□□□□□ -0.29
CCDC88B-206ENST00000473405 TMEM37Q8WXS4 190 aa13.26□□□□□ -0.29
CCDC88B-206ENST00000473405 RPUSD4Q96CM3 377 aaKnown RBP13.26□□□□□ -0.29
CCDC88B-206ENST00000473405 C11orf1Q9H5F2 150 aa13.26□□□□□ -0.29
CCDC88B-206ENST00000473405 ZNF331Q9NQX6 463 aaPredicted RBP13.26□□□□□ -0.29
CCDC88B-206ENST00000473405 IGLV2-18A0A075B6J9 118 aa13.25□□□□□ -0.29
CCDC88B-206ENST00000473405 SNRPCP09234 159 aaKnown RBP13.25□□□□□ -0.29
CCDC88B-206ENST00000473405 RHOBP62745 196 aa13.25□□□□□ -0.29
CCDC88B-206ENST00000473405 RNF212Q495C1 297 aa13.25□□□□□ -0.29
CCDC88B-206ENST00000473405 LCN15Q6UWW0 184 aa13.25□□□□□ -0.29
CCDC88B-206ENST00000473405 LRRC20Q8TCA0 184 aa13.25□□□□□ -0.29
CCDC88B-206ENST00000473405 NUDT15Q9NV35 164 aa13.25□□□□□ -0.29
CCDC88B-206ENST00000473405 RNF24Q9Y225 148 aa13.25□□□□□ -0.29
CCDC88B-206ENST00000473405 TRAV6A0A075B6T7 132 aa13.24□□□□□ -0.29
CCDC88B-206ENST00000473405 PRSS29PA6NIE9 313 aa13.24□□□□□ -0.29
CCDC88B-206ENST00000473405 SLC17A3O00476 420 aa13.24□□□□□ -0.29
CCDC88B-206ENST00000473405 COX7A2P2O60397 106 aa13.24□□□□□ -0.29
CCDC88B-206ENST00000473405 TCRBP04435 133 aa13.24□□□□□ -0.29
CCDC88B-206ENST00000473405 TMEM256Q8N2U0 113 aa13.24□□□□□ -0.29
CCDC88B-206ENST00000473405 SEC22CQ9BRL7 303 aa13.24□□□□□ -0.29
CCDC88B-206ENST00000473405 IGLC2P0DOY2 106 aa13.23□□□□□ -0.29
CCDC88B-206ENST00000473405 DEFB130BP0DP73 79 aa13.23□□□□□ -0.29
CCDC88B-206ENST00000473405 DEFB130AP0DP74 79 aa13.23□□□□□ -0.29
CCDC88B-206ENST00000473405 ZNF846Q147U1 533 aa13.23□□□□□ -0.29
CCDC88B-206ENST00000473405 OPCMLQ14982 345 aa13.23□□□□□ -0.29
CCDC88B-206ENST00000473405 FCN2Q15485 313 aa13.23□□□□□ -0.29
CCDC88B-206ENST00000473405 BPIFA4PQ86YQ2 179 aa13.23□□□□□ -0.29
CCDC88B-206ENST00000473405 ZNF431Q8TF32 576 aaPredicted RBP13.23□□□□□ -0.29
CCDC88B-206ENST00000473405 SLC50A1Q9BRV3 221 aa13.23□□□□□ -0.29
CCDC88B-206ENST00000473405 LSM5Q9Y4Y9 91 aaKnown RBP13.23□□□□□ -0.29
CCDC88B-206ENST00000473405 FAM25EA8MYX2 175 aa13.22□□□□□ -0.29
CCDC88B-206ENST00000473405 H3BTX0 84 aa13.22□□□□□ -0.29
CCDC88B-206ENST00000473405 L7N2F9 121 aa13.22□□□□□ -0.29
CCDC88B-206ENST00000473405 CDKN1BP46527 198 aa13.22□□□□□ -0.29
CCDC88B-206ENST00000473405 CAMLGP49069 296 aa13.22□□□□□ -0.29
CCDC88B-206ENST00000473405 CAV2P51636 162 aa13.22□□□□□ -0.29
CCDC88B-206ENST00000473405 TAS2R60P59551 318 aa13.22□□□□□ -0.29
CCDC88B-206ENST00000473405 VAMP2P63027 116 aa13.22□□□□□ -0.29
CCDC88B-206ENST00000473405 KIR3DS1Q14943 382 aa13.22□□□□□ -0.29
CCDC88B-206ENST00000473405 LINC01587Q99440 93 aa13.22□□□□□ -0.29
CCDC88B-206ENST00000473405 PPP1R14DQ9NXH3 145 aa13.22□□□□□ -0.29
CCDC88B-206ENST00000473405 PRAC2D3DTV9 90 aa13.21□□□□□ -0.29
CCDC88B-206ENST00000473405 H3BQ15 152 aa13.21□□□□□ -0.29
CCDC88B-206ENST00000473405 CST7O76096 145 aa13.21□□□□□ -0.29
CCDC88B-206ENST00000473405 C10orf113Q5VZT2 155 aa13.21□□□□□ -0.29
CCDC88B-206ENST00000473405 NRARPQ7Z6K4 114 aa13.21□□□□□ -0.29
CCDC88B-206ENST00000473405 C15orf53Q8NAA6 179 aa13.21□□□□□ -0.29
CCDC88B-206ENST00000473405 RNASE8Q8TDE3 154 aaKnown RBP13.21□□□□□ -0.29
CCDC88B-206ENST00000473405 WDR83OSQ9Y284 106 aa13.21□□□□□ -0.29
CCDC88B-206ENST00000473405 RYR1P21817 5038 aa13.21□□□□□ -0.29
CCDC88B-206ENST00000473405 C5orf51A6NDU8 294 aa13.2□□□□□ -0.3
CCDC88B-206ENST00000473405 FAM24AA6NFZ4 105 aa13.2□□□□□ -0.3
CCDC88B-206ENST00000473405 BCAP31P51572 246 aa13.2□□□□□ -0.3
CCDC88B-206ENST00000473405 VWC2Q2TAL6 325 aa13.2□□□□□ -0.3
CCDC88B-206ENST00000473405 MIC13Q5XKP0 118 aa13.2□□□□□ -0.3
CCDC88B-206ENST00000473405 SAT2Q96F10 170 aaPredicted RBP13.2□□□□□ -0.3
CCDC88B-206ENST00000473405 C16orf74Q96GX8 76 aa13.2□□□□□ -0.3
CCDC88B-206ENST00000473405 PARD6GQ9BYG4 376 aaPredicted RBP13.2□□□□□ -0.3
CCDC88B-206ENST00000473405 TRAV5A0A0B4J249 113 aa13.19□□□□□ -0.3
CCDC88B-206ENST00000473405 HTN1P15515 57 aa13.19□□□□□ -0.3
CCDC88B-206ENST00000473405 IL15RAQ13261 267 aa13.19□□□□□ -0.3
CCDC88B-206ENST00000473405 C12orf45Q8N5I9 185 aaPredicted RBP13.19□□□□□ -0.3
CCDC88B-206ENST00000473405 S100ZQ8WXG8 99 aa13.19□□□□□ -0.3
CCDC88B-206ENST00000473405 C2orf50Q96LR7 162 aa13.19□□□□□ -0.3
CCDC88B-206ENST00000473405 DNAJC4Q9NNZ3 241 aa13.19□□□□□ -0.3
CCDC88B-206ENST00000473405 LYRM2Q9NU23 88 aaPredicted RBP13.19□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms