RNA–Protein interactions for RNA: ENST00000473191.1

USP40-212, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 590 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-212ENST00000473191 TMEM37Q8WXS4 190 aa11.82□□□□□ -0.52
USP40-212ENST00000473191 NUDT15Q9NV35 164 aa11.82□□□□□ -0.52
USP40-212ENST00000473191 MGAT4CQ9UBM8 478 aa11.82□□□□□ -0.52
USP40-212ENST00000473191 PLAC8L1A1L4L8 177 aa11.81□□□□□ -0.52
USP40-212ENST00000473191 FAM24AA6NFZ4 105 aa11.81□□□□□ -0.52
USP40-212ENST00000473191 FNDC10F2Z333 226 aa11.81□□□□□ -0.52
USP40-212ENST00000473191 SELENOTP62341 195 aa11.81□□□□□ -0.52
USP40-212ENST00000473191 HIST1H1AQ02539 215 aaPredicted RBP11.81□□□□□ -0.52
USP40-212ENST00000473191 KIR3DS1Q14943 382 aa11.81□□□□□ -0.52
USP40-212ENST00000473191 LINC00305Q7Z4B0 112 aa11.81□□□□□ -0.52
USP40-212ENST00000473191 POM121L12Q8N7R1 296 aa11.81□□□□□ -0.52
USP40-212ENST00000473191 TMEM208Q9BTX3 173 aa11.81□□□□□ -0.52
USP40-212ENST00000473191 SLC17A3O00476 420 aa11.8□□□□□ -0.52
USP40-212ENST00000473191 CST7O76096 145 aa11.8□□□□□ -0.52
USP40-212ENST00000473191 DUSP14O95147 198 aaKnown RBP11.8□□□□□ -0.52
USP40-212ENST00000473191 PSG3Q16557 428 aa11.8□□□□□ -0.52
USP40-212ENST00000473191 OR8A1Q8NGG7 326 aa11.8□□□□□ -0.52
USP40-212ENST00000473191 ZNF431Q8TF32 576 aaPredicted RBP11.8□□□□□ -0.52
USP40-212ENST00000473191 PARD6GQ9BYG4 376 aaPredicted RBP11.8□□□□□ -0.52
USP40-212ENST00000473191 KIAA1109Q2LD37 5005 aa11.79□□□□□ -0.52
USP40-212ENST00000473191 TRAV5A0A0B4J249 113 aa11.79□□□□□ -0.52
USP40-212ENST00000473191 PRAC2D3DTV9 90 aa11.79□□□□□ -0.52
USP40-212ENST00000473191 BOLA2-SMG1P6H3BVE0 249 aa11.79□□□□□ -0.52
USP40-212ENST00000473191 GOSR2O14653 212 aa11.79□□□□□ -0.52
USP40-212ENST00000473191 P0DMU3 169 aa11.79□□□□□ -0.52
USP40-212ENST00000473191 FAM231AP0DMU4 169 aa11.79□□□□□ -0.52
USP40-212ENST00000473191 FAM231CP0DMU5 169 aa11.79□□□□□ -0.52
USP40-212ENST00000473191 ZNF846Q147U1 533 aa11.79□□□□□ -0.52
USP40-212ENST00000473191 MIC13Q5XKP0 118 aa11.79□□□□□ -0.52
USP40-212ENST00000473191 IGLV2-18A0A075B6J9 118 aa11.78□□□□□ -0.52
USP40-212ENST00000473191 C5orf51A6NDU8 294 aa11.78□□□□□ -0.52
USP40-212ENST00000473191 L7N2F9 121 aa11.78□□□□□ -0.52
USP40-212ENST00000473191 INSP01308 110 aa11.78□□□□□ -0.52
USP40-212ENST00000473191 BCAP31P51572 246 aa11.78□□□□□ -0.52
USP40-212ENST00000473191 RHOBP62745 196 aa11.78□□□□□ -0.52
USP40-212ENST00000473191 VAMP2P63027 116 aa11.78□□□□□ -0.52
USP40-212ENST00000473191 OPCMLQ14982 345 aa11.78□□□□□ -0.52
USP40-212ENST00000473191 TMEM88Q6PEY1 159 aa11.78□□□□□ -0.52
USP40-212ENST00000473191 ZNF546Q86UE3 836 aa11.78□□□□□ -0.52
USP40-212ENST00000473191 KRTAP17-1Q9BYP8 105 aa11.78□□□□□ -0.52
USP40-212ENST00000473191 ZNF331Q9NQX6 463 aaPredicted RBP11.78□□□□□ -0.52
USP40-212ENST00000473191 IGSF23A1L1A6 192 aa11.77□□□□□ -0.53
USP40-212ENST00000473191 H3BQ15 152 aa11.77□□□□□ -0.53
USP40-212ENST00000473191 RTL8CO15255 209 aa11.77□□□□□ -0.53
USP40-212ENST00000473191 H2AFB2P0C5Z0 115 aa11.77□□□□□ -0.53
USP40-212ENST00000473191 S100A7P31151 101 aa11.77□□□□□ -0.53
USP40-212ENST00000473191 CAV2P51636 162 aa11.77□□□□□ -0.53
USP40-212ENST00000473191 DAD1P61803 113 aa11.77□□□□□ -0.53
USP40-212ENST00000473191 IL15RAQ13261 267 aa11.77□□□□□ -0.53
USP40-212ENST00000473191 OXA1LQ15070 435 aa11.77□□□□□ -0.53
USP40-212ENST00000473191 NRARPQ7Z6K4 114 aa11.77□□□□□ -0.53
USP40-212ENST00000473191 C12orf45Q8N5I9 185 aaPredicted RBP11.77□□□□□ -0.53
USP40-212ENST00000473191 LRRC20Q8TCA0 184 aa11.77□□□□□ -0.53
USP40-212ENST00000473191 RPUSD4Q96CM3 377 aaKnown RBP11.77□□□□□ -0.53
USP40-212ENST00000473191 GGACTQ9BVM4 153 aa11.77□□□□□ -0.53
USP40-212ENST00000473191 DYNC1H1Q14204 4646 aaKnown RBP11.77□□□□□ -0.53
USP40-212ENST00000473191 A0A1B0GVY2 172 aa11.76□□□□□ -0.53
USP40-212ENST00000473191 COX7A2P2O60397 106 aa11.76□□□□□ -0.53
USP40-212ENST00000473191 HTN1P15515 57 aa11.76□□□□□ -0.53
USP40-212ENST00000473191 RAB32Q13637 225 aa11.76□□□□□ -0.53
USP40-212ENST00000473191 C2orf50Q96LR7 162 aa11.76□□□□□ -0.53
USP40-212ENST00000473191 PKD1P98161 4303 aa11.76□□□□□ -0.53
USP40-212ENST00000473191 TEX48A0A1B0GUV7 120 aa11.75□□□□□ -0.53
USP40-212ENST00000473191 IGLC2P0DOY2 106 aa11.75□□□□□ -0.53
USP40-212ENST00000473191 DEFB130BP0DP73 79 aa11.75□□□□□ -0.53
USP40-212ENST00000473191 DEFB130AP0DP74 79 aa11.75□□□□□ -0.53
USP40-212ENST00000473191 CAMLGP49069 296 aa11.75□□□□□ -0.53
USP40-212ENST00000473191 S100A10P60903 97 aa11.75□□□□□ -0.53
USP40-212ENST00000473191 C10orf113Q5VZT2 155 aa11.75□□□□□ -0.53
USP40-212ENST00000473191 SAT2Q96F10 170 aaPredicted RBP11.75□□□□□ -0.53
USP40-212ENST00000473191 LINC01587Q99440 93 aa11.75□□□□□ -0.53
USP40-212ENST00000473191 WDR83OSQ9Y284 106 aa11.75□□□□□ -0.53
USP40-212ENST00000473191 NACAE9PAV3 2078 aa11.74□□□□□ -0.53
USP40-212ENST00000473191 UBE2L5PA0A1B0GUS4 154 aa11.74□□□□□ -0.53
USP40-212ENST00000473191 VWC2Q2TAL6 325 aa11.74□□□□□ -0.53
USP40-212ENST00000473191 PXDC1Q5TGL8 231 aa11.74□□□□□ -0.53
USP40-212ENST00000473191 LCN15Q6UWW0 184 aa11.74□□□□□ -0.53
USP40-212ENST00000473191 BPIFA4PQ86YQ2 179 aa11.74□□□□□ -0.53
USP40-212ENST00000473191 TMEM252Q8N6L7 170 aa11.74□□□□□ -0.53
USP40-212ENST00000473191 CCDC32Q9BV29 185 aa11.74□□□□□ -0.53
USP40-212ENST00000473191 PKHD1P08F94 4074 aa11.74□□□□□ -0.53
USP40-212ENST00000473191 UBE2DNLQ8IWF7 75 aa11.73□□□□□ -0.53
USP40-212ENST00000473191 FAM210BQ96KR6 192 aa11.73□□□□□ -0.53
USP40-212ENST00000473191 DNAJC4Q9NNZ3 241 aa11.73□□□□□ -0.53
USP40-212ENST00000473191 LYRM2Q9NU23 88 aaPredicted RBP11.73□□□□□ -0.53
USP40-212ENST00000473191 UQCC1Q9NVA1 299 aa11.73□□□□□ -0.53
USP40-212ENST00000473191 ZNF586Q9NXT0 402 aa11.73□□□□□ -0.53
USP40-212ENST00000473191 FAM240BA0A1B0GVZ2 78 aa11.72□□□□□ -0.53
USP40-212ENST00000473191 J3KRW8 73 aa11.72□□□□□ -0.53
USP40-212ENST00000473191 SIX6O95475 246 aa11.72□□□□□ -0.53
USP40-212ENST00000473191 CXCL2P19875 107 aa11.72□□□□□ -0.53
USP40-212ENST00000473191 TSPOP30536 169 aa11.72□□□□□ -0.53
USP40-212ENST00000473191 CDKN1BP46527 198 aa11.72□□□□□ -0.53
USP40-212ENST00000473191 IFITM3Q01628 133 aa11.72□□□□□ -0.53
USP40-212ENST00000473191 GCSAMLQ5JQS6 135 aa11.72□□□□□ -0.53
USP40-212ENST00000473191 Q6ZR54 194 aa11.72□□□□□ -0.53
USP40-212ENST00000473191 SLC50A1Q9BRV3 221 aa11.72□□□□□ -0.53
USP40-212ENST00000473191 PPP1R14DQ9NXH3 145 aa11.72□□□□□ -0.53
USP40-212ENST00000473191 LYRM9A8MSI8 78 aa11.71□□□□□ -0.53
USP40-212ENST00000473191 SULT1A1P50225 295 aa11.71□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms