RNA–Protein interactions for RNA: ENST00000472729.1

COMMD1-208, Transcript of copper metabolism domain containing 1, human

TSL 3

Gene COMMD1, Length 629 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
COMMD1-208	ENST00000472729	HIST1H1A	Q02539	215 aa	Predicted RBP	14.03	□□□□□ -0.16
COMMD1-208	ENST00000472729	LCN15	Q6UWW0	184 aa		14.03	□□□□□ -0.16
COMMD1-208	ENST00000472729		Q6ZTC4	211 aa		14.03	□□□□□ -0.16
COMMD1-208	ENST00000472729	WDR83OS	Q9Y284	106 aa		14.03	□□□□□ -0.16
COMMD1-208	ENST00000472729	TRAV8-2	A0A0B4J237	113 aa		14.02	□□□□□ -0.17
COMMD1-208	ENST00000472729	ZNF705F	A8MVS1	300 aa	Predicted RBP	14.02	□□□□□ -0.17
COMMD1-208	ENST00000472729		E5RGE8	158 aa		14.02	□□□□□ -0.17
COMMD1-208	ENST00000472729	INS	P01308	110 aa		14.02	□□□□□ -0.17
COMMD1-208	ENST00000472729	ZNF705D	P0CH99	300 aa	Predicted RBP	14.02	□□□□□ -0.17
COMMD1-208	ENST00000472729	ZNF705B	P0CI00	300 aa	Predicted RBP	14.02	□□□□□ -0.17
COMMD1-208	ENST00000472729	CXCL2	P19875	107 aa		14.02	□□□□□ -0.17
COMMD1-208	ENST00000472729	PSG3	Q16557	428 aa		14.02	□□□□□ -0.17
COMMD1-208	ENST00000472729	RRN3P1	Q2M238	152 aa		14.02	□□□□□ -0.17
COMMD1-208	ENST00000472729	LRRC37A5P	Q49AS3	106 aa		14.02	□□□□□ -0.17
COMMD1-208	ENST00000472729	LGALS9C	Q6DKI2	356 aa		14.02	□□□□□ -0.17
COMMD1-208	ENST00000472729	SLC50A1	Q9BRV3	221 aa		14.02	□□□□□ -0.17
COMMD1-208	ENST00000472729	DEFB131B	A0A096LNP1	70 aa		14.01	□□□□□ -0.17
COMMD1-208	ENST00000472729	IGSF23	A1L1A6	192 aa		14.01	□□□□□ -0.17
COMMD1-208	ENST00000472729	SIX6	O95475	246 aa		14.01	□□□□□ -0.17
COMMD1-208	ENST00000472729	CXCL3	P19876	107 aa		14.01	□□□□□ -0.17
COMMD1-208	ENST00000472729	FGF7	P21781	194 aa		14.01	□□□□□ -0.17
COMMD1-208	ENST00000472729	B2M	P61769	119 aa		14.01	□□□□□ -0.17
COMMD1-208	ENST00000472729	MIC13	Q5XKP0	118 aa		14.01	□□□□□ -0.17
COMMD1-208	ENST00000472729	IGF2BP2-AS1	Q96M15	143 aa		14.01	□□□□□ -0.17
COMMD1-208	ENST00000472729	NMES1	Q9C002	83 aa		14.01	□□□□□ -0.17
COMMD1-208	ENST00000472729	MPDU1	O75352	247 aa		14	□□□□□ -0.17
COMMD1-208	ENST00000472729	RPL29	P47914	159 aa	Known RBP	14	□□□□□ -0.17
COMMD1-208	ENST00000472729	IL15RA	Q13261	267 aa		14	□□□□□ -0.17
COMMD1-208	ENST00000472729	SPINK13	Q1W4C9	94 aa		14	□□□□□ -0.17
COMMD1-208	ENST00000472729	ZNF767P	Q75MW2	155 aa		14	□□□□□ -0.17
COMMD1-208	ENST00000472729	OR8A1	Q8NGG7	326 aa		14	□□□□□ -0.17
COMMD1-208	ENST00000472729	TMEM37	Q8WXS4	190 aa		14	□□□□□ -0.17
COMMD1-208	ENST00000472729	RPUSD4	Q96CM3	377 aa	Known RBP	14	□□□□□ -0.17
COMMD1-208	ENST00000472729	C17orf77	Q96MU5	243 aa		14	□□□□□ -0.17
COMMD1-208	ENST00000472729	C11orf1	Q9H5F2	150 aa		14	□□□□□ -0.17
COMMD1-208	ENST00000472729	SLC39A9	Q9NUM3	307 aa		14	□□□□□ -0.17
COMMD1-208	ENST00000472729	LOC102723971	A0A1B0GUV8	181 aa		13.99	□□□□□ -0.17
COMMD1-208	ENST00000472729		M0R2Z0	102 aa		13.99	□□□□□ -0.17
COMMD1-208	ENST00000472729	SNRPC	P09234	159 aa	Known RBP	13.99	□□□□□ -0.17
COMMD1-208	ENST00000472729	PET100	P0DJ07	73 aa		13.99	□□□□□ -0.17
COMMD1-208	ENST00000472729	IFITM3	Q01628	133 aa		13.99	□□□□□ -0.17
COMMD1-208	ENST00000472729	GUK1	Q16774	197 aa		13.99	□□□□□ -0.17
COMMD1-208	ENST00000472729	VWC2	Q2TAL6	325 aa		13.99	□□□□□ -0.17
COMMD1-208	ENST00000472729	C12orf74	Q32Q52	190 aa		13.99	□□□□□ -0.17
COMMD1-208	ENST00000472729	OR11H7	Q8NGC8	314 aa		13.99	□□□□□ -0.17
COMMD1-208	ENST00000472729	OR10J6P	Q8NGY7	276 aa		13.99	□□□□□ -0.17
COMMD1-208	ENST00000472729	CELA1	Q9UNI1	258 aa		13.99	□□□□□ -0.17
COMMD1-208	ENST00000472729	PXMP4	Q9Y6I8	212 aa		13.99	□□□□□ -0.17
COMMD1-208	ENST00000472729	BOLA2-SMG1P6	H3BVE0	249 aa		13.98	□□□□□ -0.17
COMMD1-208	ENST00000472729	OPCML	Q14982	345 aa		13.98	□□□□□ -0.17
COMMD1-208	ENST00000472729	MARVELD1	Q9BSK0	173 aa		13.98	□□□□□ -0.17
COMMD1-208	ENST00000472729	AGRN	O00468	2067 aa		13.97	□□□□□ -0.17
COMMD1-208	ENST00000472729	PRR20E	P86478	221 aa		13.97	□□□□□ -0.17
COMMD1-208	ENST00000472729	PRR20C	P86479	221 aa		13.97	□□□□□ -0.17
COMMD1-208	ENST00000472729	PRR20D	P86480	221 aa		13.97	□□□□□ -0.17
COMMD1-208	ENST00000472729	PRR20B	P86481	221 aa		13.97	□□□□□ -0.17
COMMD1-208	ENST00000472729	PRR20A	P86496	221 aa		13.97	□□□□□ -0.17
COMMD1-208	ENST00000472729	C1orf158	Q8N1D5	194 aa		13.97	□□□□□ -0.17
COMMD1-208	ENST00000472729	OR5C1	Q8NGR4	320 aa		13.97	□□□□□ -0.17
COMMD1-208	ENST00000472729	ZNF331	Q9NQX6	463 aa	Predicted RBP	13.97	□□□□□ -0.17
COMMD1-208	ENST00000472729	KCNIP2	Q9NS61	270 aa		13.97	□□□□□ -0.17
COMMD1-208	ENST00000472729	IGHV4-4	A0A075B6R2	117 aa		13.96	□□□□□ -0.17
COMMD1-208	ENST00000472729		H3BTX0	84 aa		13.96	□□□□□ -0.17
COMMD1-208	ENST00000472729	NHLH2	Q02577	135 aa		13.96	□□□□□ -0.17
COMMD1-208	ENST00000472729	FAM222A	Q5U5X8	452 aa		13.96	□□□□□ -0.17
COMMD1-208	ENST00000472729	AMTN	Q6UX39	209 aa		13.96	□□□□□ -0.17
COMMD1-208	ENST00000472729	LINC01587	Q99440	93 aa		13.96	□□□□□ -0.17
COMMD1-208	ENST00000472729	NIPSNAP3B	Q9BS92	247 aa		13.96	□□□□□ -0.17
COMMD1-208	ENST00000472729	RNF126	Q9BV68	326 aa		13.96	□□□□□ -0.17
COMMD1-208	ENST00000472729	YTHDF2	Q9Y5A9	579 aa	Known RBP	13.96	□□□□□ -0.17
COMMD1-208	ENST00000472729		A8MTW9	85 aa		13.95	□□□□□ -0.18
COMMD1-208	ENST00000472729	C17orf112	F2Z3M2	114 aa		13.95	□□□□□ -0.18
COMMD1-208	ENST00000472729	TSPO	P30536	169 aa		13.95	□□□□□ -0.18
COMMD1-208	ENST00000472729	CLINT1	Q14677	625 aa		13.95	□□□□□ -0.18
COMMD1-208	ENST00000472729	BAP18	Q8IXM2	172 aa		13.95	□□□□□ -0.18
COMMD1-208	ENST00000472729	THAP6	Q8TBB0	222 aa		13.95	□□□□□ -0.18
COMMD1-208	ENST00000472729	CHAC2	Q8WUX2	184 aa		13.95	□□□□□ -0.18
COMMD1-208	ENST00000472729	NDUFAF3	Q9BU61	184 aa		13.95	□□□□□ -0.18
COMMD1-208	ENST00000472729	NPCDR1	Q9BY65	106 aa		13.95	□□□□□ -0.18
COMMD1-208	ENST00000472729	TRAV12-2	A0A075B6T6	113 aa		13.94	□□□□□ -0.18
COMMD1-208	ENST00000472729	TRAV5	A0A0B4J249	113 aa		13.94	□□□□□ -0.18
COMMD1-208	ENST00000472729	MRPS12	O15235	138 aa	Known RBP	13.94	□□□□□ -0.18
COMMD1-208	ENST00000472729	HTN1	P15515	57 aa		13.94	□□□□□ -0.18
COMMD1-208	ENST00000472729	MORN5	Q5VZ52	161 aa		13.94	□□□□□ -0.18
COMMD1-208	ENST00000472729	TMEM256	Q8N2U0	113 aa		13.94	□□□□□ -0.18
COMMD1-208	ENST00000472729	PPP1R1C	Q8WVI7	109 aa		13.94	□□□□□ -0.18
COMMD1-208	ENST00000472729	OR5AC2	Q9NZP5	309 aa		13.94	□□□□□ -0.18
COMMD1-208	ENST00000472729	DKK2	Q9UBU2	259 aa		13.94	□□□□□ -0.18
COMMD1-208	ENST00000472729	APLN	Q9ULZ1	77 aa		13.94	□□□□□ -0.18
COMMD1-208	ENST00000472729	TIMM9	Q9Y5J7	89 aa		13.94	□□□□□ -0.18
COMMD1-208	ENST00000472729	IGLC2	P0DOY2	106 aa		13.93	□□□□□ -0.18
COMMD1-208	ENST00000472729	HTN3	P15516	51 aa		13.93	□□□□□ -0.18
COMMD1-208	ENST00000472729	CDKN1B	P46527	198 aa		13.93	□□□□□ -0.18
COMMD1-208	ENST00000472729	DAD1	P61803	113 aa		13.93	□□□□□ -0.18
COMMD1-208	ENST00000472729	LYST	Q99698	3801 aa		13.92	□□□□□ -0.18
COMMD1-208	ENST00000472729	PLEC	Q15149	4684 aa	Known RBP	13.92	□□□□□ -0.18
COMMD1-208	ENST00000472729	ZNF705G	A8MUZ8	300 aa	Predicted RBP	13.92	□□□□□ -0.18
COMMD1-208	ENST00000472729	RPP25L	Q8N5L8	163 aa	Known RBP	13.92	□□□□□ -0.18
COMMD1-208	ENST00000472729	DNAH1	Q9P2D7	4330 aa		13.92	□□□□□ -0.18
COMMD1-208	ENST00000472729		H3BQ15	152 aa		13.91	□□□□□ -0.18

Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms