RNA–Protein interactions for RNA: ENST00000466233.1

CHD3-207, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 4

Gene CHD3, Length 648 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-207ENST00000466233 PKHD1P08F94 4074 aa9.52□□□□□ -0.89
CHD3-207ENST00000466233 DNAH17Q9UFH2 4485 aa9.52□□□□□ -0.89
CHD3-207ENST00000466233 DNAH2Q9P225 4427 aa9.51□□□□□ -0.89
CHD3-207ENST00000466233 SMCO3A2RU48 225 aa9.51□□□□□ -0.89
CHD3-207ENST00000466233 CENPXA8MT69 81 aa9.51□□□□□ -0.89
CHD3-207ENST00000466233 FGL1Q08830 312 aa9.51□□□□□ -0.89
CHD3-207ENST00000466233 BPIFA4PQ86YQ2 179 aa9.51□□□□□ -0.89
CHD3-207ENST00000466233 RNF182Q8N6D2 247 aa9.51□□□□□ -0.89
CHD3-207ENST00000466233 OR10J6PQ8NGY7 276 aa9.51□□□□□ -0.89
CHD3-207ENST00000466233 ZNRF2Q8NHG8 242 aa9.51□□□□□ -0.89
CHD3-207ENST00000466233 LRRC20Q8TCA0 184 aa9.51□□□□□ -0.89
CHD3-207ENST00000466233 TMEM263Q8WUH6 116 aaKnown RBP9.51□□□□□ -0.89
CHD3-207ENST00000466233 LINC01587Q99440 93 aa9.51□□□□□ -0.89
CHD3-207ENST00000466233 ARL6Q9H0F7 186 aa9.51□□□□□ -0.89
CHD3-207ENST00000466233 ARV1Q9H2C2 271 aa9.51□□□□□ -0.89
CHD3-207ENST00000466233 ZNF331Q9NQX6 463 aaPredicted RBP9.51□□□□□ -0.89
CHD3-207ENST00000466233 PPP1R14DQ9NXH3 145 aa9.51□□□□□ -0.89
CHD3-207ENST00000466233 NBDYA0A0U1RRE5 68 aa9.5□□□□□ -0.89
CHD3-207ENST00000466233 H3BNG1 76 aa9.5□□□□□ -0.89
CHD3-207ENST00000466233 SSSCA1O60232 199 aa9.5□□□□□ -0.89
CHD3-207ENST00000466233 INPP1P49441 399 aa9.5□□□□□ -0.89
CHD3-207ENST00000466233 RHOBP62745 196 aa9.5□□□□□ -0.89
CHD3-207ENST00000466233 HIST1H1AQ02539 215 aaPredicted RBP9.5□□□□□ -0.89
CHD3-207ENST00000466233 PATE2Q6UY27 113 aa9.5□□□□□ -0.89
CHD3-207ENST00000466233 BAP18Q8IXM2 172 aa9.5□□□□□ -0.89
CHD3-207ENST00000466233 LINC00612Q8N6U2 182 aa9.5□□□□□ -0.89
CHD3-207ENST00000466233 RNASE8Q8TDE3 154 aaKnown RBP9.5□□□□□ -0.89
CHD3-207ENST00000466233 MITD1Q8WV92 249 aa9.5□□□□□ -0.89
CHD3-207ENST00000466233 RPUSD4Q96CM3 377 aaKnown RBP9.5□□□□□ -0.89
CHD3-207ENST00000466233 ODF3Q96PU9 254 aa9.5□□□□□ -0.89
CHD3-207ENST00000466233 F5H768 121 aa9.49□□□□□ -0.89
CHD3-207ENST00000466233 GOSR2O14653 212 aa9.49□□□□□ -0.89
CHD3-207ENST00000466233 DEFB130BP0DP73 79 aa9.49□□□□□ -0.89
CHD3-207ENST00000466233 DEFB130AP0DP74 79 aa9.49□□□□□ -0.89
CHD3-207ENST00000466233 ANXA7P20073 488 aaKnown RBP9.49□□□□□ -0.89
CHD3-207ENST00000466233 AZU1P20160 251 aa9.49□□□□□ -0.89
CHD3-207ENST00000466233 GUK1Q16774 197 aa9.49□□□□□ -0.89
CHD3-207ENST00000466233 IAH1Q2TAA2 248 aaPredicted RBP9.49□□□□□ -0.89
CHD3-207ENST00000466233 TRIQKQ629K1 86 aa9.49□□□□□ -0.89
CHD3-207ENST00000466233 IGFL4Q6B9Z1 124 aa9.49□□□□□ -0.89
CHD3-207ENST00000466233 UHRF2Q96PU4 802 aa9.49□□□□□ -0.89
CHD3-207ENST00000466233 RBM38Q9H0Z9 239 aaKnown RBP9.49□□□□□ -0.89
CHD3-207ENST00000466233 PXMP4Q9Y6I8 212 aa9.49□□□□□ -0.89
CHD3-207ENST00000466233 TRAV12-2A0A075B6T6 113 aa9.48□□□□□ -0.89
CHD3-207ENST00000466233 ZNF253O75346 499 aa9.48□□□□□ -0.89
CHD3-207ENST00000466233 CDK2AP2O75956 126 aa9.48□□□□□ -0.89
CHD3-207ENST00000466233 METTL15P1P0C7V9 234 aa9.48□□□□□ -0.89
CHD3-207ENST00000466233 RAB31Q13636 194 aa9.48□□□□□ -0.89
CHD3-207ENST00000466233 BAK1Q16611 211 aa9.48□□□□□ -0.89
CHD3-207ENST00000466233 LINC00305Q7Z4B0 112 aa9.48□□□□□ -0.89
CHD3-207ENST00000466233 C6orf223Q8N319 242 aa9.48□□□□□ -0.89
CHD3-207ENST00000466233 C7orf66A4D0T2 115 aa9.47□□□□□ -0.89
CHD3-207ENST00000466233 AGPAT2O15120 278 aa9.47□□□□□ -0.89
CHD3-207ENST00000466233 ZBTB8BQ8NAP8 495 aaPredicted RBP9.47□□□□□ -0.89
CHD3-207ENST00000466233 CHAC2Q8WUX2 184 aa9.47□□□□□ -0.89
CHD3-207ENST00000466233 RCL1Q9Y2P8 373 aaKnown RBP9.47□□□□□ -0.89
CHD3-207ENST00000466233 NACAE9PAV3 2078 aa9.47□□□□□ -0.89
CHD3-207ENST00000466233 PKD1P98161 4303 aa9.46□□□□□ -0.89
CHD3-207ENST00000466233 A0A1W2PPQ1 181 aa9.46□□□□□ -0.9
CHD3-207ENST00000466233 CCDC160A6NGH7 325 aa9.46□□□□□ -0.9
CHD3-207ENST00000466233 NUDT3O95989 172 aa9.46□□□□□ -0.9
CHD3-207ENST00000466233 PRM2P04554 102 aa9.46□□□□□ -0.9
CHD3-207ENST00000466233 IGLC2P0DOY2 106 aa9.46□□□□□ -0.9
CHD3-207ENST00000466233 RRAS2P62070 204 aaPredicted RBP9.46□□□□□ -0.9
CHD3-207ENST00000466233 SLC38A11Q08AI6 406 aa9.46□□□□□ -0.9
CHD3-207ENST00000466233 TTC32Q5I0X7 151 aa9.46□□□□□ -0.9
CHD3-207ENST00000466233 Q6ZRG5 221 aa9.46□□□□□ -0.9
CHD3-207ENST00000466233 CCDC28AQ8IWP9 274 aa9.46□□□□□ -0.9
CHD3-207ENST00000466233 TMEM37Q8WXS4 190 aa9.46□□□□□ -0.9
CHD3-207ENST00000466233 MRPL53Q96EL3 112 aaKnown RBP9.46□□□□□ -0.9
CHD3-207ENST00000466233 SAT2Q96F10 170 aaPredicted RBP9.46□□□□□ -0.9
CHD3-207ENST00000466233 C18orf15Q96N68 181 aa9.46□□□□□ -0.9
CHD3-207ENST00000466233 UPK3BQ9BT76 320 aa9.46□□□□□ -0.9
CHD3-207ENST00000466233 DNAJC4Q9NNZ3 241 aa9.46□□□□□ -0.9
CHD3-207ENST00000466233 FLVCR2Q9UPI3 526 aa9.46□□□□□ -0.9
CHD3-207ENST00000466233 MUC4Q99102 2169 aa9.46□□□□□ -0.9
CHD3-207ENST00000466233 COX7A2P2O60397 106 aa9.45□□□□□ -0.9
CHD3-207ENST00000466233 CCNKO75909 580 aa9.45□□□□□ -0.9
CHD3-207ENST00000466233 MBPP02686 304 aaPredicted RBP9.45□□□□□ -0.9
CHD3-207ENST00000466233 M6PRP20645 277 aa9.45□□□□□ -0.9
CHD3-207ENST00000466233 BTCP35070 178 aa9.45□□□□□ -0.9
CHD3-207ENST00000466233 DAZ2Q13117 558 aaKnown RBP9.45□□□□□ -0.9
CHD3-207ENST00000466233 C10orf113Q5VZT2 155 aa9.45□□□□□ -0.9
CHD3-207ENST00000466233 OR1L4Q8NGR5 311 aa9.45□□□□□ -0.9
CHD3-207ENST00000466233 RXFP4Q8TDU9 374 aa9.45□□□□□ -0.9
CHD3-207ENST00000466233 RNF141Q8WVD5 230 aa9.45□□□□□ -0.9
CHD3-207ENST00000466233 PFDN5Q99471 154 aa9.45□□□□□ -0.9
CHD3-207ENST00000466233 PYGO2Q9BRQ0 406 aa9.45□□□□□ -0.9
CHD3-207ENST00000466233 NOP10Q9NPE3 64 aaKnown RBP9.45□□□□□ -0.9
CHD3-207ENST00000466233 LINC00588Q9Y4M8 146 aa9.45□□□□□ -0.9
CHD3-207ENST00000466233 CAMLGP49069 296 aa9.44□□□□□ -0.9
CHD3-207ENST00000466233 ARL16Q0P5N6 197 aa9.44□□□□□ -0.9
CHD3-207ENST00000466233 CLINT1Q14677 625 aa9.44□□□□□ -0.9
CHD3-207ENST00000466233 ZNF846Q147U1 533 aa9.44□□□□□ -0.9
CHD3-207ENST00000466233 FCN2Q15485 313 aa9.44□□□□□ -0.9
CHD3-207ENST00000466233 VWC2Q2TAL6 325 aa9.44□□□□□ -0.9
CHD3-207ENST00000466233 C12orf45Q8N5I9 185 aaPredicted RBP9.44□□□□□ -0.9
CHD3-207ENST00000466233 SDHCQ99643 169 aaPredicted RBP9.44□□□□□ -0.9
CHD3-207ENST00000466233 MGST2Q99735 147 aa9.44□□□□□ -0.9
CHD3-207ENST00000466233 LINC00467Q9BRT7 94 aa9.44□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms