RNA–Protein interactions for RNA: ENST00000461872.6

SYNE1-216, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 10,075 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-216ENST00000461872 IGHV3-7P01780 117 aa5.68□□□□□ -1.5
SYNE1-216ENST00000461872 C5orf64Q2M2E5 130 aa5.68□□□□□ -1.5
SYNE1-216ENST00000461872 FAM53AQ6NSI3 398 aaPredicted RBP5.68□□□□□ -1.5
SYNE1-216ENST00000461872 STPG4Q8N801 248 aa5.68□□□□□ -1.5
SYNE1-216ENST00000461872 PIFOQ8TCI5 191 aa5.68□□□□□ -1.5
SYNE1-216ENST00000461872 TMEM141Q96I45 108 aa5.68□□□□□ -1.5
SYNE1-216ENST00000461872 A0A1W2PPI3 338 aa5.68□□□□□ -1.5
SYNE1-216ENST00000461872 MYOD1P15172 320 aa5.68□□□□□ -1.5
SYNE1-216ENST00000461872 WDR87Q6ZQQ6 2873 aa5.68□□□□□ -1.5
SYNE1-216ENST00000461872 DYSFO75923 2080 aa5.68□□□□□ -1.5
SYNE1-216ENST00000461872 H3BRN7 92 aa5.68□□□□□ -1.5
SYNE1-216ENST00000461872 M0R3E3 92 aa5.68□□□□□ -1.5
SYNE1-216ENST00000461872 UNQ5815/PRO19632Q6UWF5 114 aa5.68□□□□□ -1.5
SYNE1-216ENST00000461872 SCGB3A1Q96QR1 104 aa5.68□□□□□ -1.5
SYNE1-216ENST00000461872 PLAUP00749 431 aa5.67□□□□□ -1.5
SYNE1-216ENST00000461872 SNRPD3P62318 126 aaKnown RBP5.67□□□□□ -1.5
SYNE1-216ENST00000461872 ATP6V0E2Q8NHE4 81 aa5.67□□□□□ -1.5
SYNE1-216ENST00000461872 ZNF502Q8TBZ5 544 aa5.67□□□□□ -1.5
SYNE1-216ENST00000461872 PRDM6Q9NQX0 595 aa5.67□□□□□ -1.5
SYNE1-216ENST00000461872 ZNF138P52744 262 aa5.67□□□□□ -1.5
SYNE1-216ENST00000461872 ODF3L1Q8IXM7 274 aa5.67□□□□□ -1.5
SYNE1-216ENST00000461872 FDCSPQ8NFU4 85 aa5.67□□□□□ -1.5
SYNE1-216ENST00000461872 IGHV1-3A0A0C4DH29 117 aa5.67□□□□□ -1.5
SYNE1-216ENST00000461872 D6R8Y8 96 aa5.67□□□□□ -1.5
SYNE1-216ENST00000461872 GHRHP01286 108 aa5.67□□□□□ -1.5
SYNE1-216ENST00000461872 BSPH1Q075Z2 132 aa5.67□□□□□ -1.5
SYNE1-216ENST00000461872 Q6ZS92 163 aa5.67□□□□□ -1.5
SYNE1-216ENST00000461872 MUC21A0A0G2JKD1 596 aa5.67□□□□□ -1.5
SYNE1-216ENST00000461872 MUC21A0A140T8X8 626 aa5.67□□□□□ -1.5
SYNE1-216ENST00000461872 FAM223BA6NKX1 122 aa5.67□□□□□ -1.5
SYNE1-216ENST00000461872 KLK10O43240 276 aa5.67□□□□□ -1.5
SYNE1-216ENST00000461872 MUC21Q5SSG8 566 aa5.67□□□□□ -1.5
SYNE1-216ENST00000461872 FAM223AQ8IWN6 122 aa5.67□□□□□ -1.5
SYNE1-216ENST00000461872 CYYR1Q96J86 154 aa5.67□□□□□ -1.5
SYNE1-216ENST00000461872 FOXC2Q99958 501 aa5.67□□□□□ -1.5
SYNE1-216ENST00000461872 MEGF9Q9H1U4 602 aa5.67□□□□□ -1.5
SYNE1-216ENST00000461872 ACACBO00763 2458 aa5.67□□□□□ -1.5
SYNE1-216ENST00000461872 CTRLP40313 264 aa5.67□□□□□ -1.5
SYNE1-216ENST00000461872 MBD6Q96DN6 1003 aa5.67□□□□□ -1.5
SYNE1-216ENST00000461872 USMG5Q96IX5 58 aa5.67□□□□□ -1.5
SYNE1-216ENST00000461872 ZNF747Q9BV97 191 aa5.67□□□□□ -1.5
SYNE1-216ENST00000461872 OTOGLQ3ZCN5 2332 aa5.67□□□□□ -1.5
SYNE1-216ENST00000461872 TRAV3A0A0B4J244 114 aa5.67□□□□□ -1.5
SYNE1-216ENST00000461872 A0A1B0GWB2 263 aa5.67□□□□□ -1.5
SYNE1-216ENST00000461872 PLXNB1O43157 2135 aa5.67□□□□□ -1.5
SYNE1-216ENST00000461872 ATXN7O15265 892 aaPredicted RBP5.67□□□□□ -1.5
SYNE1-216ENST00000461872 PLEKHB2Q96CS7 222 aa5.67□□□□□ -1.5
SYNE1-216ENST00000461872 BUB1B-PAK6H3BSN5 160 aa5.67□□□□□ -1.5
SYNE1-216ENST00000461872 CEACAM8P31997 349 aaPredicted RBP5.67□□□□□ -1.5
SYNE1-216ENST00000461872 FAM167A-AS1Q96KT0 104 aa5.67□□□□□ -1.5
SYNE1-216ENST00000461872 NPSP0C0P6 89 aa5.66□□□□□ -1.5
SYNE1-216ENST00000461872 EBLN2Q6P2I7 272 aa5.66□□□□□ -1.5
SYNE1-216ENST00000461872 TMEM200BQ69YZ2 307 aa5.66□□□□□ -1.5
SYNE1-216ENST00000461872 CGB3P0DN86 165 aa5.66□□□□□ -1.5
SYNE1-216ENST00000461872 CGB7P0DN87 165 aa5.66□□□□□ -1.5
SYNE1-216ENST00000461872 HS3ST6Q96QI5 342 aa5.66□□□□□ -1.5
SYNE1-216ENST00000461872 HOXA3O43365 443 aaPredicted RBP5.66□□□□□ -1.5
SYNE1-216ENST00000461872 RNASE1P07998 156 aaKnown RBP5.66□□□□□ -1.5
SYNE1-216ENST00000461872 GP9P14770 177 aa5.66□□□□□ -1.5
SYNE1-216ENST00000461872 Q6ZR03 302 aa5.66□□□□□ -1.5
SYNE1-216ENST00000461872 DPH3P1Q9H4G8 78 aa5.66□□□□□ -1.5
SYNE1-216ENST00000461872 IGHV1-69DA0A0B4J2H0 117 aa5.66□□□□□ -1.5
SYNE1-216ENST00000461872 C21orf62-AS1Q17RA5 79 aa5.66□□□□□ -1.5
SYNE1-216ENST00000461872 LOC389332A0A1B0GUA5 103 aa5.66□□□□□ -1.5
SYNE1-216ENST00000461872 A8MWV9 139 aa5.66□□□□□ -1.5
SYNE1-216ENST00000461872 APOMO95445 188 aa5.66□□□□□ -1.5
SYNE1-216ENST00000461872 IGKV1-16P04430 117 aa5.66□□□□□ -1.5
SYNE1-216ENST00000461872 A0A1W2PPM0 123 aa5.66□□□□□ -1.5
SYNE1-216ENST00000461872 H3BUA1 57 aa5.66□□□□□ -1.5
SYNE1-216ENST00000461872 GNG5P63218 68 aa5.66□□□□□ -1.5
SYNE1-216ENST00000461872 TRAV12-1A0A0B4J245 112 aa5.66□□□□□ -1.5
SYNE1-216ENST00000461872 WT1-ASQ06250 92 aa5.66□□□□□ -1.5
SYNE1-216ENST00000461872 TM4SF20Q53R12 229 aa5.66□□□□□ -1.5
SYNE1-216ENST00000461872 A6NNC1 897 aa5.65□□□□□ -1.5
SYNE1-216ENST00000461872 M0R381 172 aa5.65□□□□□ -1.5
SYNE1-216ENST00000461872 CHAC1Q9BUX1 264 aa5.65□□□□□ -1.5
SYNE1-216ENST00000461872 TFPI2P48307 235 aa5.65□□□□□ -1.5
SYNE1-216ENST00000461872 SPRY4Q9C004 299 aa5.65□□□□□ -1.5
SYNE1-216ENST00000461872 IGLC1P0CG04 106 aa5.65□□□□□ -1.5
SYNE1-216ENST00000461872 FOXG1P55316 489 aaPredicted RBP5.65□□□□□ -1.5
SYNE1-216ENST00000461872 CD300EQ496F6 205 aaPredicted RBP5.65□□□□□ -1.5
SYNE1-216ENST00000461872 FAM159AQ6UWV7 190 aa5.65□□□□□ -1.5
SYNE1-216ENST00000461872 SCRT2Q9NQ03 307 aa5.65□□□□□ -1.5
SYNE1-216ENST00000461872 GATA2P23769 480 aaPredicted RBP5.65□□□□□ -1.5
SYNE1-216ENST00000461872 PRTN3P24158 256 aa5.65□□□□□ -1.5
SYNE1-216ENST00000461872 CLEC2AQ6UVW9 174 aa5.65□□□□□ -1.5
SYNE1-216ENST00000461872 FBXL15Q9H469 300 aa5.65□□□□□ -1.5
SYNE1-216ENST00000461872 MED14OSP0DP75 135 aa5.65□□□□□ -1.51
SYNE1-216ENST00000461872 CD59P13987 128 aa5.65□□□□□ -1.51
SYNE1-216ENST00000461872 DPH3Q96FX2 82 aa5.65□□□□□ -1.51
SYNE1-216ENST00000461872 DUSP14O95147 198 aaKnown RBP5.65□□□□□ -1.51
SYNE1-216ENST00000461872 TTC32Q5I0X7 151 aa5.65□□□□□ -1.51
SYNE1-216ENST00000461872 C19orf71A6NCJ1 209 aa5.65□□□□□ -1.51
SYNE1-216ENST00000461872 NKX2-8O15522 239 aa5.65□□□□□ -1.51
SYNE1-216ENST00000461872 THBDP07204 575 aa5.65□□□□□ -1.51
SYNE1-216ENST00000461872 GLMPQ8WWB7 406 aa5.65□□□□□ -1.51
SYNE1-216ENST00000461872 PPDPFLQ8WWR9 84 aa5.65□□□□□ -1.51
SYNE1-216ENST00000461872 LEAP2Q969E1 77 aa5.65□□□□□ -1.51
SYNE1-216ENST00000461872 LYZL1Q6UWQ5 148 aa5.65□□□□□ -1.51
SYNE1-216ENST00000461872 FGF23Q9GZV9 251 aaPredicted RBP5.65□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms