RNA–Protein interactions for RNA: ENST00000461520.5

USP54-208, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 1,212 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-208ENST00000461520 SMIM9A6NGZ8 99 aa5.18□□□□□ -1.58
USP54-208ENST00000461520 ZNF705FA8MVS1 300 aaPredicted RBP5.18□□□□□ -1.58
USP54-208ENST00000461520 ISLRO14498 428 aa5.18□□□□□ -1.58
USP54-208ENST00000461520 SOCS3O14543 225 aa5.18□□□□□ -1.58
USP54-208ENST00000461520 MED6O75586 246 aa5.18□□□□□ -1.58
USP54-208ENST00000461520 AMBPP02760 352 aa5.18□□□□□ -1.58
USP54-208ENST00000461520 ZNF705DP0CH99 300 aaPredicted RBP5.18□□□□□ -1.58
USP54-208ENST00000461520 ZNF705BP0CI00 300 aaPredicted RBP5.18□□□□□ -1.58
USP54-208ENST00000461520 LYZP61626 148 aa5.18□□□□□ -1.58
USP54-208ENST00000461520 RPP30P78346 268 aaKnown RBP5.18□□□□□ -1.58
USP54-208ENST00000461520 GDF5OSQ5U4N7 250 aa5.18□□□□□ -1.58
USP54-208ENST00000461520 SPATA31B1PQ5VZV4 182 aa5.18□□□□□ -1.58
USP54-208ENST00000461520 GGNBP1Q5YKI7 109 aa5.18□□□□□ -1.58
USP54-208ENST00000461520 GSG1LQ6UXU4 331 aa5.18□□□□□ -1.58
USP54-208ENST00000461520 TMED4Q7Z7H5 227 aa5.18□□□□□ -1.58
USP54-208ENST00000461520 TRIM63Q969Q1 353 aa5.18□□□□□ -1.58
USP54-208ENST00000461520 LINC00052Q96N35 136 aa5.18□□□□□ -1.58
USP54-208ENST00000461520 CIB3Q96Q77 187 aaPredicted RBP5.18□□□□□ -1.58
USP54-208ENST00000461520 TRGV9Q99603 122 aa5.18□□□□□ -1.58
USP54-208ENST00000461520 SLC25A21Q9BQT8 299 aaPredicted RBP5.18□□□□□ -1.58
USP54-208ENST00000461520 CELA1Q9UNI1 258 aa5.18□□□□□ -1.58
USP54-208ENST00000461520 TMED3Q9Y3Q3 217 aa5.18□□□□□ -1.58
USP54-208ENST00000461520 DYNC1H1Q14204 4646 aaKnown RBP5.17□□□□□ -1.58
USP54-208ENST00000461520 DNAH11Q96DT5 4516 aa5.17□□□□□ -1.58
USP54-208ENST00000461520 IGKV1OR2-108A0A075B7D4 117 aa5.17□□□□□ -1.58
USP54-208ENST00000461520 TEX48A0A1B0GUV7 120 aa5.17□□□□□ -1.58
USP54-208ENST00000461520 SYNGR2O43760 224 aa5.17□□□□□ -1.58
USP54-208ENST00000461520 SPART-AS1P0CW21 52 aa5.17□□□□□ -1.58
USP54-208ENST00000461520 P0DMU3 169 aa5.17□□□□□ -1.58
USP54-208ENST00000461520 FAM231AP0DMU4 169 aa5.17□□□□□ -1.58
USP54-208ENST00000461520 FAM231CP0DMU5 169 aa5.17□□□□□ -1.58
USP54-208ENST00000461520 IAPPP10997 89 aa5.17□□□□□ -1.58
USP54-208ENST00000461520 MEOX2P50222 304 aa5.17□□□□□ -1.58
USP54-208ENST00000461520 PAX9P55771 341 aa5.17□□□□□ -1.58
USP54-208ENST00000461520 PYDC2Q56P42 97 aa5.17□□□□□ -1.58
USP54-208ENST00000461520 OR8I2Q8N0Y5 310 aa5.17□□□□□ -1.58
USP54-208ENST00000461520 ZNF709Q8N972 641 aa5.17□□□□□ -1.58
USP54-208ENST00000461520 THAP8Q8NA92 274 aa5.17□□□□□ -1.58
USP54-208ENST00000461520 OR4B1Q8NGF8 309 aa5.17□□□□□ -1.58
USP54-208ENST00000461520 COQ8AQ8NI60 647 aa5.17□□□□□ -1.58
USP54-208ENST00000461520 PPP1R14BQ96C90 147 aa5.17□□□□□ -1.58
USP54-208ENST00000461520 NDUFAF3Q9BU61 184 aa5.17□□□□□ -1.58
USP54-208ENST00000461520 PAIP2BQ9ULR5 123 aaKnown RBP5.17□□□□□ -1.58
USP54-208ENST00000461520 V9GYH0 126 aa5.17□□□□□ -1.58
USP54-208ENST00000461520 DNAH17Q9UFH2 4485 aa5.17□□□□□ -1.58
USP54-208ENST00000461520 PKHD1P08F94 4074 aa5.16□□□□□ -1.58
USP54-208ENST00000461520 AGRNO00468 2067 aa5.16□□□□□ -1.58
USP54-208ENST00000461520 PRSS46E5RG02 174 aa5.16□□□□□ -1.58
USP54-208ENST00000461520 WRBO00258 174 aa5.16□□□□□ -1.58
USP54-208ENST00000461520 SFT2D2O95562 160 aa5.16□□□□□ -1.58
USP54-208ENST00000461520 S100A7P31151 101 aa5.16□□□□□ -1.58
USP54-208ENST00000461520 S100A5P33763 92 aa5.16□□□□□ -1.58
USP54-208ENST00000461520 GALR1P47211 349 aa5.16□□□□□ -1.58
USP54-208ENST00000461520 UBE2MP61081 183 aaKnown RBP5.16□□□□□ -1.58
USP54-208ENST00000461520 PSG9Q00887 426 aa5.16□□□□□ -1.58
USP54-208ENST00000461520 PPP1R1AQ13522 171 aa5.16□□□□□ -1.58
USP54-208ENST00000461520 OR2F1Q13607 317 aa5.16□□□□□ -1.58
USP54-208ENST00000461520 ZNF79Q15937 498 aa5.16□□□□□ -1.58
USP54-208ENST00000461520 EBLN2Q6P2I7 272 aa5.16□□□□□ -1.58
USP54-208ENST00000461520 LINC00336Q6ZUF6 198 aa5.16□□□□□ -1.58
USP54-208ENST00000461520 ZNF767PQ75MW2 155 aa5.16□□□□□ -1.58
USP54-208ENST00000461520 POM121L12Q8N7R1 296 aa5.16□□□□□ -1.58
USP54-208ENST00000461520 OR4D5Q8NGN0 318 aa5.16□□□□□ -1.58
USP54-208ENST00000461520 FAM210BQ96KR6 192 aa5.16□□□□□ -1.58
USP54-208ENST00000461520 GPR82Q96P67 336 aa5.16□□□□□ -1.58
USP54-208ENST00000461520 RPRMQ9NS64 109 aa5.16□□□□□ -1.58
USP54-208ENST00000461520 GOLT1BQ9Y3E0 138 aa5.16□□□□□ -1.58
USP54-208ENST00000461520 RFNGQ9Y644 331 aa5.16□□□□□ -1.58
USP54-208ENST00000461520 IGHV3OR16-12A0A075B7B8 117 aa5.15□□□□□ -1.59
USP54-208ENST00000461520 A0A0J9YX75 114 aa5.15□□□□□ -1.59
USP54-208ENST00000461520 ZNF98A6NK75 572 aa5.15□□□□□ -1.59
USP54-208ENST00000461520 PRSS47A8MTI9 375 aa5.15□□□□□ -1.59
USP54-208ENST00000461520 A8MTW9 85 aa5.15□□□□□ -1.59
USP54-208ENST00000461520 HOXB5P09067 269 aa5.15□□□□□ -1.59
USP54-208ENST00000461520 FXYD7P58549 80 aa5.15□□□□□ -1.59
USP54-208ENST00000461520 DEFB1P60022 68 aa5.15□□□□□ -1.59
USP54-208ENST00000461520 OXA1LQ15070 435 aa5.15□□□□□ -1.59
USP54-208ENST00000461520 SPANXN5Q5MJ07 72 aa5.15□□□□□ -1.59
USP54-208ENST00000461520 FAM78BQ5VT40 261 aa5.15□□□□□ -1.59
USP54-208ENST00000461520 CCDC190Q86UF4 302 aa5.15□□□□□ -1.59
USP54-208ENST00000461520 BPIFCQ8NFQ6 507 aa5.15□□□□□ -1.59
USP54-208ENST00000461520 OR1B1Q8NGR6 318 aa5.15□□□□□ -1.59
USP54-208ENST00000461520 MAGT1Q9H0U3 335 aa5.15□□□□□ -1.59
USP54-208ENST00000461520 SLC35B3Q9H1N7 401 aa5.15□□□□□ -1.59
USP54-208ENST00000461520 STRAPQ9Y3F4 350 aaKnown RBP5.15□□□□□ -1.59
USP54-208ENST00000461520 MUC4Q99102 2169 aa5.15□□□□□ -1.59
USP54-208ENST00000461520 NAP1L6A6NFF2 107 aa5.14□□□□□ -1.59
USP54-208ENST00000461520 CCDC160A6NGH7 325 aa5.14□□□□□ -1.59
USP54-208ENST00000461520 F6UB75 175 aa5.14□□□□□ -1.59
USP54-208ENST00000461520 IGLV2-11P01706 119 aa5.14□□□□□ -1.59
USP54-208ENST00000461520 HBE1P02100 147 aa5.14□□□□□ -1.59
USP54-208ENST00000461520 ORM2P19652 201 aa5.14□□□□□ -1.59
USP54-208ENST00000461520 EMP1P54849 157 aa5.14□□□□□ -1.59
USP54-208ENST00000461520 AKR1C1Q04828 323 aa5.14□□□□□ -1.59
USP54-208ENST00000461520 RRN3P1Q2M238 152 aa5.14□□□□□ -1.59
USP54-208ENST00000461520 FAM222AQ5U5X8 452 aa5.14□□□□□ -1.59
USP54-208ENST00000461520 TMEM182Q6ZP80 229 aaPredicted RBP5.14□□□□□ -1.59
USP54-208ENST00000461520 TMEM144Q7Z5S9 345 aa5.14□□□□□ -1.59
USP54-208ENST00000461520 C1orf158Q8N1D5 194 aa5.14□□□□□ -1.59
USP54-208ENST00000461520 IGF2BP2-AS1Q96M15 143 aa5.14□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms