RNA–Protein interactions for RNA: ENST00000455732.5

USP39-208, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 623 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-208ENST00000455732 THAP6Q8TBB0 222 aa12.59□□□□□ -0.39
USP39-208ENST00000455732 ATP5SQ99766 215 aa12.59□□□□□ -0.39
USP39-208ENST00000455732 WDR61Q9GZS3 305 aaKnown RBP12.59□□□□□ -0.39
USP39-208ENST00000455732 MED28Q9H204 178 aa12.59□□□□□ -0.39
USP39-208ENST00000455732 KCNIP2Q9NS61 270 aa12.59□□□□□ -0.39
USP39-208ENST00000455732 IGLC2P0DOY2 106 aa12.58□□□□□ -0.4
USP39-208ENST00000455732 MIFP14174 115 aa12.58□□□□□ -0.4
USP39-208ENST00000455732 RPL12P30050 165 aaKnown RBP12.58□□□□□ -0.4
USP39-208ENST00000455732 FCN2Q15485 313 aa12.58□□□□□ -0.4
USP39-208ENST00000455732 FAM78BQ5VT40 261 aa12.58□□□□□ -0.4
USP39-208ENST00000455732 ASB13Q8WXK3 278 aa12.58□□□□□ -0.4
USP39-208ENST00000455732 SLC50A1Q9BRV3 221 aa12.58□□□□□ -0.4
USP39-208ENST00000455732 HRH4Q9H3N8 390 aa12.58□□□□□ -0.4
USP39-208ENST00000455732 CLEC5AQ9NY25 188 aa12.58□□□□□ -0.4
USP39-208ENST00000455732 X6R8D5 127 aa12.58□□□□□ -0.4
USP39-208ENST00000455732 EPPK1P58107 5090 aaKnown RBP12.57□□□□□ -0.4
USP39-208ENST00000455732 JTBO76095 146 aa12.57□□□□□ -0.4
USP39-208ENST00000455732 PSG9Q00887 426 aa12.57□□□□□ -0.4
USP39-208ENST00000455732 IGFL4Q6B9Z1 124 aa12.57□□□□□ -0.4
USP39-208ENST00000455732 RNF182Q8N6D2 247 aa12.57□□□□□ -0.4
USP39-208ENST00000455732 OR4B1Q8NGF8 309 aa12.57□□□□□ -0.4
USP39-208ENST00000455732 ZNF331Q9NQX6 463 aaPredicted RBP12.57□□□□□ -0.4
USP39-208ENST00000455732 XCL2Q9UBD3 114 aa12.57□□□□□ -0.4
USP39-208ENST00000455732 DUSP14O95147 198 aaKnown RBP12.56□□□□□ -0.4
USP39-208ENST00000455732 IGKV3-20P01619 116 aa12.56□□□□□ -0.4
USP39-208ENST00000455732 OXA1LQ15070 435 aa12.56□□□□□ -0.4
USP39-208ENST00000455732 GUK1Q16774 197 aa12.56□□□□□ -0.4
USP39-208ENST00000455732 AMTNQ6UX39 209 aa12.56□□□□□ -0.4
USP39-208ENST00000455732 ZNF738Q8NE65 137 aa12.56□□□□□ -0.4
USP39-208ENST00000455732 LRRC20Q8TCA0 184 aa12.56□□□□□ -0.4
USP39-208ENST00000455732 ALMS1Q8TCU4 4167 aa12.56□□□□□ -0.4
USP39-208ENST00000455732 BIRC6Q9NR09 4857 aa12.55□□□□□ -0.4
USP39-208ENST00000455732 IGHV4-28A0A0C4DH34 117 aa12.55□□□□□ -0.4
USP39-208ENST00000455732 GIPP09681 153 aaPredicted RBP12.55□□□□□ -0.4
USP39-208ENST00000455732 CNN1P51911 297 aaKnown RBP12.55□□□□□ -0.4
USP39-208ENST00000455732 PMS2P11Q13670 270 aa12.55□□□□□ -0.4
USP39-208ENST00000455732 PSG3Q16557 428 aa12.55□□□□□ -0.4
USP39-208ENST00000455732 ZNF705AQ6ZN79 300 aaPredicted RBP12.55□□□□□ -0.4
USP39-208ENST00000455732 SAT2Q96F10 170 aaPredicted RBP12.55□□□□□ -0.4
USP39-208ENST00000455732 PARD6GQ9BYG4 376 aaPredicted RBP12.55□□□□□ -0.4
USP39-208ENST00000455732 SLC35B3Q9H1N7 401 aa12.55□□□□□ -0.4
USP39-208ENST00000455732 TMEM14CQ9P0S9 112 aa12.55□□□□□ -0.4
USP39-208ENST00000455732 TRAV5A0A0B4J249 113 aa12.54□□□□□ -0.4
USP39-208ENST00000455732 CXorf65A6NEN9 183 aa12.54□□□□□ -0.4
USP39-208ENST00000455732 C17orf112F2Z3M2 114 aa12.54□□□□□ -0.4
USP39-208ENST00000455732 H3BQ15 152 aa12.54□□□□□ -0.4
USP39-208ENST00000455732 SLC17A3O00476 420 aa12.54□□□□□ -0.4
USP39-208ENST00000455732 ZNF253O75346 499 aa12.54□□□□□ -0.4
USP39-208ENST00000455732 HLA-DMBP28068 263 aa12.54□□□□□ -0.4
USP39-208ENST00000455732 GCSAMLQ5JQS6 135 aa12.54□□□□□ -0.4
USP39-208ENST00000455732 NEU1Q99519 415 aa12.54□□□□□ -0.4
USP39-208ENST00000455732 HYDINQ4G0P3 5121 aa12.53□□□□□ -0.4
USP39-208ENST00000455732 NUPR2A6NF83 97 aa12.53□□□□□ -0.4
USP39-208ENST00000455732 ZNF705FA8MVS1 300 aaPredicted RBP12.53□□□□□ -0.4
USP39-208ENST00000455732 IFNA5P01569 189 aa12.53□□□□□ -0.4
USP39-208ENST00000455732 AMBPP02760 352 aa12.53□□□□□ -0.4
USP39-208ENST00000455732 ZNF705DP0CH99 300 aaPredicted RBP12.53□□□□□ -0.4
USP39-208ENST00000455732 ZNF705BP0CI00 300 aaPredicted RBP12.53□□□□□ -0.4
USP39-208ENST00000455732 RBMY1A1P0DJD3 496 aaKnown RBP12.53□□□□□ -0.4
USP39-208ENST00000455732 RBMY1CP0DJD4 496 aa12.53□□□□□ -0.4
USP39-208ENST00000455732 RBMY1FQ15415 496 aaKnown RBP12.53□□□□□ -0.4
USP39-208ENST00000455732 OR8A1Q8NGG7 326 aa12.53□□□□□ -0.4
USP39-208ENST00000455732 SMIM3Q9BZL3 60 aa12.53□□□□□ -0.4
USP39-208ENST00000455732 MFFQ9GZY8 342 aa12.53□□□□□ -0.4
USP39-208ENST00000455732 DEFB4AO15263 64 aa12.52□□□□□ -0.41
USP39-208ENST00000455732 FXYD7P58549 80 aa12.52□□□□□ -0.41
USP39-208ENST00000455732 CEMP1Q6PRD7 247 aaPredicted RBP12.52□□□□□ -0.41
USP39-208ENST00000455732 C11orf45Q8TAV5 145 aa12.52□□□□□ -0.41
USP39-208ENST00000455732 RPUSD4Q96CM3 377 aaKnown RBP12.52□□□□□ -0.41
USP39-208ENST00000455732 AQP10Q96PS8 301 aa12.52□□□□□ -0.41
USP39-208ENST00000455732 MRPL32Q9BYC8 188 aaKnown RBP12.52□□□□□ -0.41
USP39-208ENST00000455732 TRBV19A0A075B6N1 114 aa12.51□□□□□ -0.41
USP39-208ENST00000455732 SNRPCP09234 159 aaKnown RBP12.51□□□□□ -0.41
USP39-208ENST00000455732 HIST1H1EP10412 219 aaKnown RBP12.51□□□□□ -0.41
USP39-208ENST00000455732 PDE6HQ13956 83 aa12.51□□□□□ -0.41
USP39-208ENST00000455732 SCGB1C1Q8TD33 95 aa12.51□□□□□ -0.41
USP39-208ENST00000455732 FAM167A-AS1Q96KT0 104 aa12.51□□□□□ -0.41
USP39-208ENST00000455732 IGF2BP2-AS1Q96M15 143 aa12.51□□□□□ -0.41
USP39-208ENST00000455732 SLC25A2Q9BXI2 301 aa12.51□□□□□ -0.41
USP39-208ENST00000455732 WFDC1Q9HC57 220 aa12.51□□□□□ -0.41
USP39-208ENST00000455732 ZNF586Q9NXT0 402 aa12.51□□□□□ -0.41
USP39-208ENST00000455732 SMIM9A6NGZ8 99 aa12.5□□□□□ -0.41
USP39-208ENST00000455732 H3BTX0 84 aa12.5□□□□□ -0.41
USP39-208ENST00000455732 BOLA2-SMG1P6H3BVE0 249 aa12.5□□□□□ -0.41
USP39-208ENST00000455732 HIST1H1AQ02539 215 aaPredicted RBP12.5□□□□□ -0.41
USP39-208ENST00000455732 MIR17HGQ75NE6 70 aa12.5□□□□□ -0.41
USP39-208ENST00000455732 MRPL53Q96EL3 112 aaKnown RBP12.5□□□□□ -0.41
USP39-208ENST00000455732 GOLT1BQ9Y3E0 138 aa12.5□□□□□ -0.41
USP39-208ENST00000455732 NANOS2P60321 138 aaKnown RBP12.49□□□□□ -0.41
USP39-208ENST00000455732 C1orf158Q8N1D5 194 aa12.49□□□□□ -0.41
USP39-208ENST00000455732 PHLDA1Q8WV24 401 aaPredicted RBP12.49□□□□□ -0.41
USP39-208ENST00000455732 FUT9Q9Y231 359 aa12.49□□□□□ -0.41
USP39-208ENST00000455732 TMEM189A5PLL7 270 aa12.48□□□□□ -0.41
USP39-208ENST00000455732 CRXO43186 299 aaPredicted RBP12.48□□□□□ -0.41
USP39-208ENST00000455732 NDUFB4O95168 129 aa12.48□□□□□ -0.41
USP39-208ENST00000455732 PYYP10082 97 aa12.48□□□□□ -0.41
USP39-208ENST00000455732 ZNF266Q14584 549 aa12.48□□□□□ -0.41
USP39-208ENST00000455732 SPINK13Q1W4C9 94 aa12.48□□□□□ -0.41
USP39-208ENST00000455732 Q5BKY6 102 aa12.48□□□□□ -0.41
USP39-208ENST00000455732 FFAR4Q5NUL3 377 aa12.48□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 92.3 ms