RNA–Protein interactions for RNA: ENST00000454354.1

USP40-210, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 348 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-210ENST00000454354 SULT1A1P50225 295 aa8.61□□□□□ -1.03
USP40-210ENST00000454354 PRR20EP86478 221 aa8.61□□□□□ -1.03
USP40-210ENST00000454354 PRR20CP86479 221 aa8.61□□□□□ -1.03
USP40-210ENST00000454354 PRR20DP86480 221 aa8.61□□□□□ -1.03
USP40-210ENST00000454354 PRR20BP86481 221 aa8.61□□□□□ -1.03
USP40-210ENST00000454354 PRR20AP86496 221 aa8.61□□□□□ -1.03
USP40-210ENST00000454354 FGL1Q08830 312 aa8.61□□□□□ -1.03
USP40-210ENST00000454354 RAB32Q13637 225 aa8.61□□□□□ -1.03
USP40-210ENST00000454354 PSG3Q16557 428 aa8.61□□□□□ -1.03
USP40-210ENST00000454354 LCN15Q6UWW0 184 aa8.61□□□□□ -1.03
USP40-210ENST00000454354 ZNF767PQ75MW2 155 aa8.61□□□□□ -1.03
USP40-210ENST00000454354 ZNF738Q8NE65 137 aa8.61□□□□□ -1.03
USP40-210ENST00000454354 TMEM37Q8WXS4 190 aa8.61□□□□□ -1.03
USP40-210ENST00000454354 UQCC1Q9NVA1 299 aa8.61□□□□□ -1.03
USP40-210ENST00000454354 PTTG2Q9NZH5 202 aa8.61□□□□□ -1.03
USP40-210ENST00000454354 DKK2Q9UBU2 259 aa8.61□□□□□ -1.03
USP40-210ENST00000454354 WDR83OSQ9Y284 106 aa8.61□□□□□ -1.03
USP40-210ENST00000454354 IGSF23A1L1A6 192 aa8.6□□□□□ -1.03
USP40-210ENST00000454354 COX7A2P2O60397 106 aa8.6□□□□□ -1.03
USP40-210ENST00000454354 INSP01308 110 aa8.6□□□□□ -1.03
USP40-210ENST00000454354 HBE1P02100 147 aa8.6□□□□□ -1.03
USP40-210ENST00000454354 S100A10P60903 97 aa8.6□□□□□ -1.03
USP40-210ENST00000454354 RAB31Q13636 194 aa8.6□□□□□ -1.03
USP40-210ENST00000454354 OXA1LQ15070 435 aa8.6□□□□□ -1.03
USP40-210ENST00000454354 NRARPQ7Z6K4 114 aa8.6□□□□□ -1.03
USP40-210ENST00000454354 BPIFA4PQ86YQ2 179 aa8.6□□□□□ -1.03
USP40-210ENST00000454354 TMEM252Q8N6L7 170 aa8.6□□□□□ -1.03
USP40-210ENST00000454354 OR8A1Q8NGG7 326 aa8.6□□□□□ -1.03
USP40-210ENST00000454354 ENKURQ8TC29 256 aa8.6□□□□□ -1.03
USP40-210ENST00000454354 CHAC2Q8WUX2 184 aa8.6□□□□□ -1.03
USP40-210ENST00000454354 SLC50A1Q9BRV3 221 aa8.6□□□□□ -1.03
USP40-210ENST00000454354 ZNF331Q9NQX6 463 aaPredicted RBP8.6□□□□□ -1.03
USP40-210ENST00000454354 LOC102723971A0A1B0GUV8 181 aa8.59□□□□□ -1.03
USP40-210ENST00000454354 BOLA2-SMG1P6H3BVE0 249 aa8.59□□□□□ -1.03
USP40-210ENST00000454354 M0R2Z0 102 aa8.59□□□□□ -1.03
USP40-210ENST00000454354 IGLC2P0DOY2 106 aa8.59□□□□□ -1.03
USP40-210ENST00000454354 S100A11P31949 105 aa8.59□□□□□ -1.03
USP40-210ENST00000454354 HBG1P69891 147 aa8.59□□□□□ -1.03
USP40-210ENST00000454354 HBG2P69892 147 aa8.59□□□□□ -1.03
USP40-210ENST00000454354 IFITM3Q01628 133 aa8.59□□□□□ -1.03
USP40-210ENST00000454354 OPCMLQ14982 345 aa8.59□□□□□ -1.03
USP40-210ENST00000454354 SPINK13Q1W4C9 94 aa8.59□□□□□ -1.03
USP40-210ENST00000454354 RRN3P1Q2M238 152 aa8.59□□□□□ -1.03
USP40-210ENST00000454354 FAM222AQ5U5X8 452 aa8.59□□□□□ -1.03
USP40-210ENST00000454354 MORN5Q5VZ52 161 aa8.59□□□□□ -1.03
USP40-210ENST00000454354 C10orf113Q5VZT2 155 aa8.59□□□□□ -1.03
USP40-210ENST00000454354 STX12Q86Y82 276 aa8.59□□□□□ -1.03
USP40-210ENST00000454354 LRRC20Q8TCA0 184 aa8.59□□□□□ -1.03
USP40-210ENST00000454354 PFDN5Q99471 154 aa8.59□□□□□ -1.03
USP40-210ENST00000454354 GPN1Q9HCN4 374 aaPredicted RBP8.59□□□□□ -1.03
USP40-210ENST00000454354 DNAH2Q9P225 4427 aa8.58□□□□□ -1.04
USP40-210ENST00000454354 UBE2L5PA0A1B0GUS4 154 aa8.58□□□□□ -1.04
USP40-210ENST00000454354 PRAF2O60831 178 aa8.58□□□□□ -1.04
USP40-210ENST00000454354 RPL29P47914 159 aaKnown RBP8.58□□□□□ -1.04
USP40-210ENST00000454354 EMP1P54849 157 aa8.58□□□□□ -1.04
USP40-210ENST00000454354 B2MP61769 119 aa8.58□□□□□ -1.04
USP40-210ENST00000454354 HIST1H1AQ02539 215 aaPredicted RBP8.58□□□□□ -1.04
USP40-210ENST00000454354 ATP6V1FQ16864 119 aa8.58□□□□□ -1.04
USP40-210ENST00000454354 MIC13Q5XKP0 118 aa8.58□□□□□ -1.04
USP40-210ENST00000454354 Q6ZRG5 221 aa8.58□□□□□ -1.04
USP40-210ENST00000454354 BAP18Q8IXM2 172 aa8.58□□□□□ -1.04
USP40-210ENST00000454354 OR1L4Q8NGR5 311 aa8.58□□□□□ -1.04
USP40-210ENST00000454354 RPUSD4Q96CM3 377 aaKnown RBP8.58□□□□□ -1.04
USP40-210ENST00000454354 NIPSNAP3BQ9BS92 247 aa8.58□□□□□ -1.04
USP40-210ENST00000454354 TMEM208Q9BTX3 173 aa8.58□□□□□ -1.04
USP40-210ENST00000454354 NDUFAF3Q9BU61 184 aa8.58□□□□□ -1.04
USP40-210ENST00000454354 DNAJC4Q9NNZ3 241 aa8.58□□□□□ -1.04
USP40-210ENST00000454354 YTHDF2Q9Y5A9 579 aaKnown RBP8.58□□□□□ -1.04
USP40-210ENST00000454354 DNAH17Q9UFH2 4485 aa8.58□□□□□ -1.04
USP40-210ENST00000454354 NACAE9PAV3 2078 aa8.57□□□□□ -1.04
USP40-210ENST00000454354 SLC17A3O00476 420 aa8.57□□□□□ -1.04
USP40-210ENST00000454354 MPDU1O75352 247 aa8.57□□□□□ -1.04
USP40-210ENST00000454354 TSPOP30536 169 aa8.57□□□□□ -1.04
USP40-210ENST00000454354 BAXQ07812 192 aa8.57□□□□□ -1.04
USP40-210ENST00000454354 TMEM256Q8N2U0 113 aa8.57□□□□□ -1.04
USP40-210ENST00000454354 FAM210BQ96KR6 192 aa8.57□□□□□ -1.04
USP40-210ENST00000454354 NMES1Q9C002 83 aa8.57□□□□□ -1.04
USP40-210ENST00000454354 SLC39A9Q9NUM3 307 aa8.57□□□□□ -1.04
USP40-210ENST00000454354 PXMP4Q9Y6I8 212 aa8.57□□□□□ -1.04
USP40-210ENST00000454354 GUK1Q16774 197 aa8.56□□□□□ -1.04
USP40-210ENST00000454354 SAT2Q96F10 170 aaPredicted RBP8.56□□□□□ -1.04
USP40-210ENST00000454354 MARVELD1Q9BSK0 173 aa8.56□□□□□ -1.04
USP40-210ENST00000454354 TRAV12-2A0A075B6T6 113 aa8.55□□□□□ -1.04
USP40-210ENST00000454354 PLAC8L1A1L4L8 177 aa8.55□□□□□ -1.04
USP40-210ENST00000454354 LYRM9A8MSI8 78 aa8.55□□□□□ -1.04
USP40-210ENST00000454354 E5RGE8 158 aa8.55□□□□□ -1.04
USP40-210ENST00000454354 INMT-MINDY4F8WBC2 141 aa8.55□□□□□ -1.04
USP40-210ENST00000454354 H3BQ15 152 aa8.55□□□□□ -1.04
USP40-210ENST00000454354 ZNF253O75346 499 aa8.55□□□□□ -1.04
USP40-210ENST00000454354 SIX6O95475 246 aa8.55□□□□□ -1.04
USP40-210ENST00000454354 FGF7P21781 194 aa8.55□□□□□ -1.04
USP40-210ENST00000454354 CDKN1BP46527 198 aa8.55□□□□□ -1.04
USP40-210ENST00000454354 RHOBP62745 196 aa8.55□□□□□ -1.04
USP40-210ENST00000454354 NPCDR1Q9BY65 106 aa8.55□□□□□ -1.04
USP40-210ENST00000454354 FAT2Q9NYQ8 4349 aa8.55□□□□□ -1.04
USP40-210ENST00000454354 TRAV5A0A0B4J249 113 aa8.54□□□□□ -1.04
USP40-210ENST00000454354 ZNF705GA8MUZ8 300 aaPredicted RBP8.54□□□□□ -1.04
USP40-210ENST00000454354 H3BTX0 84 aa8.54□□□□□ -1.04
USP40-210ENST00000454354 RLN2P04090 185 aa8.54□□□□□ -1.04
USP40-210ENST00000454354 SNRPCP09234 159 aaKnown RBP8.54□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms