RNA–Protein interactions for RNA: ENST00000449684.6

LIMS1-210, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 5

Gene LIMS1, Length 492 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-210ENST00000449684 A0A087X0K7 114 aa11.17□□□□□ -0.62
LIMS1-210ENST00000449684 UBE2L5PA0A1B0GUS4 154 aa11.17□□□□□ -0.62
LIMS1-210ENST00000449684 ZNF705FA8MVS1 300 aaPredicted RBP11.17□□□□□ -0.62
LIMS1-210ENST00000449684 INMT-MINDY4F8WBC2 141 aa11.17□□□□□ -0.62
LIMS1-210ENST00000449684 ZNF705DP0CH99 300 aaPredicted RBP11.17□□□□□ -0.62
LIMS1-210ENST00000449684 ZNF705BP0CI00 300 aaPredicted RBP11.17□□□□□ -0.62
LIMS1-210ENST00000449684 HIST1H1AQ02539 215 aaPredicted RBP11.17□□□□□ -0.62
LIMS1-210ENST00000449684 PSG3Q16557 428 aa11.17□□□□□ -0.62
LIMS1-210ENST00000449684 ATP6V1FQ16864 119 aa11.17□□□□□ -0.62
LIMS1-210ENST00000449684 MIC13Q5XKP0 118 aa11.17□□□□□ -0.62
LIMS1-210ENST00000449684 ZNF767PQ75MW2 155 aa11.17□□□□□ -0.62
LIMS1-210ENST00000449684 IGF2BP2-AS1Q96M15 143 aa11.17□□□□□ -0.62
LIMS1-210ENST00000449684 C11orf1Q9H5F2 150 aa11.17□□□□□ -0.62
LIMS1-210ENST00000449684 DNAJC4Q9NNZ3 241 aa11.17□□□□□ -0.62
LIMS1-210ENST00000449684 DEFB131BA0A096LNP1 70 aa11.16□□□□□ -0.62
LIMS1-210ENST00000449684 SIX6O95475 246 aa11.16□□□□□ -0.62
LIMS1-210ENST00000449684 SNRPCP09234 159 aaKnown RBP11.16□□□□□ -0.62
LIMS1-210ENST00000449684 CXCL3P19876 107 aa11.16□□□□□ -0.62
LIMS1-210ENST00000449684 SPINK13Q1W4C9 94 aa11.16□□□□□ -0.62
LIMS1-210ENST00000449684 RRN3P1Q2M238 152 aa11.16□□□□□ -0.62
LIMS1-210ENST00000449684 C12orf74Q32Q52 190 aa11.16□□□□□ -0.62
LIMS1-210ENST00000449684 LCN15Q6UWW0 184 aa11.16□□□□□ -0.62
LIMS1-210ENST00000449684 OR11H7Q8NGC8 314 aa11.16□□□□□ -0.62
LIMS1-210ENST00000449684 PFDN5Q99471 154 aa11.16□□□□□ -0.62
LIMS1-210ENST00000449684 SLC50A1Q9BRV3 221 aa11.16□□□□□ -0.62
LIMS1-210ENST00000449684 SLC25A31Q9H0C2 315 aa11.16□□□□□ -0.62
LIMS1-210ENST00000449684 BATF3Q9NR55 127 aa11.16□□□□□ -0.62
LIMS1-210ENST00000449684 WDR83OSQ9Y284 106 aa11.16□□□□□ -0.62
LIMS1-210ENST00000449684 TEX48A0A1B0GUV7 120 aa11.15□□□□□ -0.62
LIMS1-210ENST00000449684 LOC102723971A0A1B0GUV8 181 aa11.15□□□□□ -0.62
LIMS1-210ENST00000449684 IGSF23A1L1A6 192 aa11.15□□□□□ -0.62
LIMS1-210ENST00000449684 INSP01308 110 aa11.15□□□□□ -0.62
LIMS1-210ENST00000449684 CXCL2P19875 107 aa11.15□□□□□ -0.62
LIMS1-210ENST00000449684 FGF7P21781 194 aa11.15□□□□□ -0.62
LIMS1-210ENST00000449684 CYCSP99999 105 aaKnown RBP11.15□□□□□ -0.62
LIMS1-210ENST00000449684 IL15RAQ13261 267 aa11.15□□□□□ -0.62
LIMS1-210ENST00000449684 LRRC37A5PQ49AS3 106 aa11.15□□□□□ -0.62
LIMS1-210ENST00000449684 C1orf158Q8N1D5 194 aa11.15□□□□□ -0.62
LIMS1-210ENST00000449684 OR8A1Q8NGG7 326 aa11.15□□□□□ -0.62
LIMS1-210ENST00000449684 TMEM37Q8WXS4 190 aa11.15□□□□□ -0.62
LIMS1-210ENST00000449684 RPUSD4Q96CM3 377 aaKnown RBP11.15□□□□□ -0.62
LIMS1-210ENST00000449684 IGHV4-4A0A075B6R2 117 aa11.14□□□□□ -0.63
LIMS1-210ENST00000449684 E5RGE8 158 aa11.14□□□□□ -0.63
LIMS1-210ENST00000449684 M0R2Z0 102 aa11.14□□□□□ -0.63
LIMS1-210ENST00000449684 SSNA1O43805 119 aa11.14□□□□□ -0.63
LIMS1-210ENST00000449684 RPL29P47914 159 aaKnown RBP11.14□□□□□ -0.63
LIMS1-210ENST00000449684 B2MP61769 119 aa11.14□□□□□ -0.63
LIMS1-210ENST00000449684 IFITM3Q01628 133 aa11.14□□□□□ -0.63
LIMS1-210ENST00000449684 OPCMLQ14982 345 aa11.14□□□□□ -0.63
LIMS1-210ENST00000449684 VWC2Q2TAL6 325 aa11.14□□□□□ -0.63
LIMS1-210ENST00000449684 AMTNQ6UX39 209 aa11.14□□□□□ -0.63
LIMS1-210ENST00000449684 NMES1Q9C002 83 aa11.14□□□□□ -0.63
LIMS1-210ENST00000449684 SLC39A9Q9NUM3 307 aa11.14□□□□□ -0.63
LIMS1-210ENST00000449684 A8MTW9 85 aa11.13□□□□□ -0.63
LIMS1-210ENST00000449684 H3BTX0 84 aa11.13□□□□□ -0.63
LIMS1-210ENST00000449684 BOLA2-SMG1P6H3BVE0 249 aa11.13□□□□□ -0.63
LIMS1-210ENST00000449684 PRR20EP86478 221 aa11.13□□□□□ -0.63
LIMS1-210ENST00000449684 PRR20CP86479 221 aa11.13□□□□□ -0.63
LIMS1-210ENST00000449684 PRR20DP86480 221 aa11.13□□□□□ -0.63
LIMS1-210ENST00000449684 PRR20BP86481 221 aa11.13□□□□□ -0.63
LIMS1-210ENST00000449684 PRR20AP86496 221 aa11.13□□□□□ -0.63
LIMS1-210ENST00000449684 FAM222AQ5U5X8 452 aa11.13□□□□□ -0.63
LIMS1-210ENST00000449684 RNF126Q9BV68 326 aa11.13□□□□□ -0.63
LIMS1-210ENST00000449684 ZNF331Q9NQX6 463 aaPredicted RBP11.13□□□□□ -0.63
LIMS1-210ENST00000449684 APLNQ9ULZ1 77 aa11.13□□□□□ -0.63
LIMS1-210ENST00000449684 PXMP4Q9Y6I8 212 aa11.13□□□□□ -0.63
LIMS1-210ENST00000449684 MRPS12O15235 138 aaKnown RBP11.12□□□□□ -0.63
LIMS1-210ENST00000449684 MPDU1O75352 247 aa11.12□□□□□ -0.63
LIMS1-210ENST00000449684 NHLH2Q02577 135 aa11.12□□□□□ -0.63
LIMS1-210ENST00000449684 OR5C1Q8NGR4 320 aa11.12□□□□□ -0.63
LIMS1-210ENST00000449684 OR10J6PQ8NGY7 276 aa11.12□□□□□ -0.63
LIMS1-210ENST00000449684 NIPSNAP3BQ9BS92 247 aa11.12□□□□□ -0.63
LIMS1-210ENST00000449684 MARVELD1Q9BSK0 173 aa11.12□□□□□ -0.63
LIMS1-210ENST00000449684 DKK2Q9UBU2 259 aa11.12□□□□□ -0.63
LIMS1-210ENST00000449684 YTHDF2Q9Y5A9 579 aaKnown RBP11.12□□□□□ -0.63
LIMS1-210ENST00000449684 TRAV12-2A0A075B6T6 113 aa11.11□□□□□ -0.63
LIMS1-210ENST00000449684 TRAV5A0A0B4J249 113 aa11.11□□□□□ -0.63
LIMS1-210ENST00000449684 PRB4P10163 310 aaPredicted RBP11.11□□□□□ -0.63
LIMS1-210ENST00000449684 GUK1Q16774 197 aa11.11□□□□□ -0.63
LIMS1-210ENST00000449684 MORN5Q5VZ52 161 aa11.11□□□□□ -0.63
LIMS1-210ENST00000449684 BAP18Q8IXM2 172 aa11.11□□□□□ -0.63
LIMS1-210ENST00000449684 RPP25LQ8N5L8 163 aaKnown RBP11.11□□□□□ -0.63
LIMS1-210ENST00000449684 LINC01587Q99440 93 aa11.11□□□□□ -0.63
LIMS1-210ENST00000449684 NDUFAF3Q9BU61 184 aa11.11□□□□□ -0.63
LIMS1-210ENST00000449684 ZNF705GA8MUZ8 300 aaPredicted RBP11.1□□□□□ -0.63
LIMS1-210ENST00000449684 PET100P0DJ07 73 aa11.1□□□□□ -0.63
LIMS1-210ENST00000449684 HTN3P15516 51 aa11.1□□□□□ -0.63
LIMS1-210ENST00000449684 DAD1P61803 113 aa11.1□□□□□ -0.63
LIMS1-210ENST00000449684 CLINT1Q14677 625 aa11.1□□□□□ -0.63
LIMS1-210ENST00000449684 THAP6Q8TBB0 222 aa11.1□□□□□ -0.63
LIMS1-210ENST00000449684 CHAC2Q8WUX2 184 aa11.1□□□□□ -0.63
LIMS1-210ENST00000449684 OR5AC2Q9NZP5 309 aa11.1□□□□□ -0.63
LIMS1-210ENST00000449684 EPPK1P58107 5090 aaKnown RBP11.09□□□□□ -0.63
LIMS1-210ENST00000449684 H3BQ15 152 aa11.09□□□□□ -0.63
LIMS1-210ENST00000449684 SLC17A3O00476 420 aa11.09□□□□□ -0.63
LIMS1-210ENST00000449684 CRXO43186 299 aaPredicted RBP11.09□□□□□ -0.63
LIMS1-210ENST00000449684 IGLC2P0DOY2 106 aa11.09□□□□□ -0.63
LIMS1-210ENST00000449684 HTN1P15515 57 aa11.09□□□□□ -0.63
LIMS1-210ENST00000449684 TSPOP30536 169 aa11.09□□□□□ -0.63
LIMS1-210ENST00000449684 CDKN1BP46527 198 aa11.09□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms