RNA–Protein interactions for RNA: ENST00000448905.6

HMGB3-204, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 812 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-204ENST00000448905 Q9H8V8 135 aa9.32□□□□□ -0.92
HMGB3-204ENST00000448905 NOP10Q9NPE3 64 aaKnown RBP9.32□□□□□ -0.92
HMGB3-204ENST00000448905 H7BYZ3 331 aa9.31□□□□□ -0.92
HMGB3-204ENST00000448905 LINC00869P0C866 280 aa9.31□□□□□ -0.92
HMGB3-204ENST00000448905 S100A5P33763 92 aa9.31□□□□□ -0.92
HMGB3-204ENST00000448905 UBE2MP61081 183 aaKnown RBP9.31□□□□□ -0.92
HMGB3-204ENST00000448905 PPP1R1AQ13522 171 aa9.31□□□□□ -0.92
HMGB3-204ENST00000448905 TTC32Q5I0X7 151 aa9.31□□□□□ -0.92
HMGB3-204ENST00000448905 MAPKAPK5-AS1Q8N8E1 139 aa9.31□□□□□ -0.92
HMGB3-204ENST00000448905 OR10P1Q8NGE3 313 aa9.31□□□□□ -0.92
HMGB3-204ENST00000448905 RPUSD4Q96CM3 377 aaKnown RBP9.31□□□□□ -0.92
HMGB3-204ENST00000448905 GNPNAT1Q96EK6 184 aaPredicted RBP9.31□□□□□ -0.92
HMGB3-204ENST00000448905 C20orf144Q9BQM9 153 aa9.31□□□□□ -0.92
HMGB3-204ENST00000448905 ARL6Q9H0F7 186 aa9.31□□□□□ -0.92
HMGB3-204ENST00000448905 MGAT4CQ9UBM8 478 aa9.31□□□□□ -0.92
HMGB3-204ENST00000448905 LINC00588Q9Y4M8 146 aa9.31□□□□□ -0.92
HMGB3-204ENST00000448905 A0A087X0K7 114 aa9.3□□□□□ -0.92
HMGB3-204ENST00000448905 PLAC8L1A1L4L8 177 aa9.3□□□□□ -0.92
HMGB3-204ENST00000448905 GOSR2O14653 212 aa9.3□□□□□ -0.92
HMGB3-204ENST00000448905 CXCL2P19875 107 aa9.3□□□□□ -0.92
HMGB3-204ENST00000448905 M6PRP20645 277 aa9.3□□□□□ -0.92
HMGB3-204ENST00000448905 POLR2GP62487 172 aaKnown RBP eCLIP9.3□□□□□ -0.92
HMGB3-204ENST00000448905 TEPPQ6URK8 271 aa9.3□□□□□ -0.92
HMGB3-204ENST00000448905 TMEM263Q8WUH6 116 aaKnown RBP9.3□□□□□ -0.92
HMGB3-204ENST00000448905 RNF141Q8WVD5 230 aa9.3□□□□□ -0.92
HMGB3-204ENST00000448905 ZNF503Q96F45 646 aa9.3□□□□□ -0.92
HMGB3-204ENST00000448905 SMIM8Q96KF7 97 aa9.3□□□□□ -0.92
HMGB3-204ENST00000448905 FNDC10F2Z333 226 aa9.29□□□□□ -0.92
HMGB3-204ENST00000448905 INPP1P49441 399 aa9.29□□□□□ -0.92
HMGB3-204ENST00000448905 DLK1P80370 383 aa9.29□□□□□ -0.92
HMGB3-204ENST00000448905 CCDC190Q86UF4 302 aa9.29□□□□□ -0.92
HMGB3-204ENST00000448905 UHRF2Q96PU4 802 aa9.29□□□□□ -0.92
HMGB3-204ENST00000448905 SLC50A1Q9BRV3 221 aa9.29□□□□□ -0.92
HMGB3-204ENST00000448905 ARV1Q9H2C2 271 aa9.29□□□□□ -0.92
HMGB3-204ENST00000448905 PMS2P5A8MQ11 134 aa9.28□□□□□ -0.92
HMGB3-204ENST00000448905 SNURFLB1AK76 121 aa9.28□□□□□ -0.92
HMGB3-204ENST00000448905 RLN2P04090 185 aa9.28□□□□□ -0.92
HMGB3-204ENST00000448905 BTF3P20290 206 aaKnown RBP9.28□□□□□ -0.92
HMGB3-204ENST00000448905 RRAS2P62070 204 aaPredicted RBP9.28□□□□□ -0.92
HMGB3-204ENST00000448905 LCN15Q6UWW0 184 aa9.28□□□□□ -0.92
HMGB3-204ENST00000448905 BPIFA4PQ86YQ2 179 aa9.28□□□□□ -0.92
HMGB3-204ENST00000448905 RXFP4Q8TDU9 374 aa9.28□□□□□ -0.92
HMGB3-204ENST00000448905 TRAV26-1A0A087WT03 109 aa9.27□□□□□ -0.93
HMGB3-204ENST00000448905 C9orf170A2RU37 121 aa9.27□□□□□ -0.93
HMGB3-204ENST00000448905 H3BMQ9 156 aa9.27□□□□□ -0.93
HMGB3-204ENST00000448905 K7EPK0 472 aa9.27□□□□□ -0.93
HMGB3-204ENST00000448905 SSSCA1O60232 199 aa9.27□□□□□ -0.93
HMGB3-204ENST00000448905 TAS2R30P59541 319 aa9.27□□□□□ -0.93
HMGB3-204ENST00000448905 RAB31Q13636 194 aa9.27□□□□□ -0.93
HMGB3-204ENST00000448905 LINC00305Q7Z4B0 112 aa9.27□□□□□ -0.93
HMGB3-204ENST00000448905 SPATA12Q7Z6I5 190 aa9.27□□□□□ -0.93
HMGB3-204ENST00000448905 ZNF546Q86UE3 836 aa9.27□□□□□ -0.93
HMGB3-204ENST00000448905 RNASE8Q8TDE3 154 aaKnown RBP9.27□□□□□ -0.93
HMGB3-204ENST00000448905 TRIM63Q969Q1 353 aa9.27□□□□□ -0.93
HMGB3-204ENST00000448905 GGACTQ9BVM4 153 aa9.27□□□□□ -0.93
HMGB3-204ENST00000448905 ZNF331Q9NQX6 463 aaPredicted RBP9.27□□□□□ -0.93
HMGB3-204ENST00000448905 A0A1W2PPQ1 181 aa9.26□□□□□ -0.93
HMGB3-204ENST00000448905 NAP1L6A6NFF2 107 aa9.26□□□□□ -0.93
HMGB3-204ENST00000448905 H3BNG1 76 aa9.26□□□□□ -0.93
HMGB3-204ENST00000448905 COX7A2P2O60397 106 aa9.26□□□□□ -0.93
HMGB3-204ENST00000448905 METTL15P1P0C7V9 234 aa9.26□□□□□ -0.93
HMGB3-204ENST00000448905 C4orf46Q504U0 113 aa9.26□□□□□ -0.93
HMGB3-204ENST00000448905 PATE2Q6UY27 113 aa9.26□□□□□ -0.93
HMGB3-204ENST00000448905 PXMP4Q9Y6I8 212 aa9.26□□□□□ -0.93
HMGB3-204ENST00000448905 GAGE12BA1L429 117 aa9.25□□□□□ -0.93
HMGB3-204ENST00000448905 CENPXA8MT69 81 aa9.25□□□□□ -0.93
HMGB3-204ENST00000448905 GAGE7O76087 117 aa9.25□□□□□ -0.93
HMGB3-204ENST00000448905 GAGE12FP0CL80 117 aa9.25□□□□□ -0.93
HMGB3-204ENST00000448905 GAGE12GP0CL81 117 aa9.25□□□□□ -0.93
HMGB3-204ENST00000448905 GAGE12IP0CL82 117 aa9.25□□□□□ -0.93
HMGB3-204ENST00000448905 GUK1Q16774 197 aa9.25□□□□□ -0.93
HMGB3-204ENST00000448905 SPANXN2Q5MJ10 180 aa9.25□□□□□ -0.93
HMGB3-204ENST00000448905 TMEM14EPQ6UXP3 125 aa9.25□□□□□ -0.93
HMGB3-204ENST00000448905 Q6ZRG5 221 aa9.25□□□□□ -0.93
HMGB3-204ENST00000448905 Q8N1X5 172 aa9.25□□□□□ -0.93
HMGB3-204ENST00000448905 Q9H3A6 140 aa9.25□□□□□ -0.93
HMGB3-204ENST00000448905 SCRT2Q9NQ03 307 aa9.25□□□□□ -0.93
HMGB3-204ENST00000448905 GSKIPQ9P0R6 139 aa9.25□□□□□ -0.93
HMGB3-204ENST00000448905 A0A0J9YY99 117 aa9.24□□□□□ -0.93
HMGB3-204ENST00000448905 ZNF701M0R085 212 aaPredicted RBP9.24□□□□□ -0.93
HMGB3-204ENST00000448905 AGPAT2O15120 278 aa9.24□□□□□ -0.93
HMGB3-204ENST00000448905 TSC22D2O75157 780 aa9.24□□□□□ -0.93
HMGB3-204ENST00000448905 SCGB1D2O95969 90 aa9.24□□□□□ -0.93
HMGB3-204ENST00000448905 OR4E1P0C645 316 aa9.24□□□□□ -0.93
HMGB3-204ENST00000448905 LEPP41159 167 aa9.24□□□□□ -0.93
HMGB3-204ENST00000448905 SLC38A11Q08AI6 406 aa9.24□□□□□ -0.93
HMGB3-204ENST00000448905 ESRGQ1W209 222 aa9.24□□□□□ -0.93
HMGB3-204ENST00000448905 IAH1Q2TAA2 248 aaPredicted RBP9.24□□□□□ -0.93
HMGB3-204ENST00000448905 C10orf113Q5VZT2 155 aa9.24□□□□□ -0.93
HMGB3-204ENST00000448905 UPK3BQ9BT76 320 aa9.24□□□□□ -0.93
HMGB3-204ENST00000448905 DNAJC4Q9NNZ3 241 aa9.24□□□□□ -0.93
HMGB3-204ENST00000448905 V9GYH0 126 aa9.24□□□□□ -0.93
HMGB3-204ENST00000448905 NACAE9PAV3 2078 aa9.24□□□□□ -0.93
HMGB3-204ENST00000448905 HSPG2P98160 4391 aa9.23□□□□□ -0.93
HMGB3-204ENST00000448905 TRGV2A0A075B6R0 118 aa9.23□□□□□ -0.93
HMGB3-204ENST00000448905 CCDC160A6NGH7 325 aa9.23□□□□□ -0.93
HMGB3-204ENST00000448905 L7N2F9 121 aa9.23□□□□□ -0.93
HMGB3-204ENST00000448905 MRPS12O15235 138 aaKnown RBP9.23□□□□□ -0.93
HMGB3-204ENST00000448905 NDUFB6O95139 128 aa9.23□□□□□ -0.93
HMGB3-204ENST00000448905 SNRPCP09234 159 aaKnown RBP9.23□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 263.8 ms