RNA–Protein interactions for RNA: ENST00000448038.2

SYNE1-213, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 6,001 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-213ENST00000448038 SSBP4Q9BWG4 385 aaPredicted RBP5.88□□□□□ -1.47
SYNE1-213ENST00000448038 ELANEP08246 267 aa5.88□□□□□ -1.47
SYNE1-213ENST00000448038 GZMBP10144 247 aa5.88□□□□□ -1.47
SYNE1-213ENST00000448038 C12orf54Q6X4T0 127 aa5.88□□□□□ -1.47
SYNE1-213ENST00000448038 OR11H1Q8NG94 326 aa5.88□□□□□ -1.47
SYNE1-213ENST00000448038 RITA1Q96K30 269 aa5.88□□□□□ -1.47
SYNE1-213ENST00000448038 ANKRD11Q6UB99 2663 aaPredicted RBP5.88□□□□□ -1.47
SYNE1-213ENST00000448038 ARHGAP21Q5T5U3 1957 aa5.88□□□□□ -1.47
SYNE1-213ENST00000448038 IFITM10A6NMD0 228 aa5.88□□□□□ -1.47
SYNE1-213ENST00000448038 H3BVH4 76 aa5.88□□□□□ -1.47
SYNE1-213ENST00000448038 RPL35AP18077 110 aaKnown RBP5.88□□□□□ -1.47
SYNE1-213ENST00000448038 COL4A2P08572 1712 aa5.88□□□□□ -1.47
SYNE1-213ENST00000448038 NDUFA4O00483 81 aa5.87□□□□□ -1.47
SYNE1-213ENST00000448038 IGLV1-47P01700 117 aa5.87□□□□□ -1.47
SYNE1-213ENST00000448038 APOHP02749 345 aaPredicted RBP5.87□□□□□ -1.47
SYNE1-213ENST00000448038 IGLC1P0CG04 106 aa5.87□□□□□ -1.47
SYNE1-213ENST00000448038 NMUP48645 174 aa5.87□□□□□ -1.47
SYNE1-213ENST00000448038 FXYD7P58549 80 aa5.87□□□□□ -1.47
SYNE1-213ENST00000448038 TRAV12-3A0A0B4J271 114 aa5.87□□□□□ -1.47
SYNE1-213ENST00000448038 TMEM262E9PQX1 116 aa5.87□□□□□ -1.47
SYNE1-213ENST00000448038 CCDC168Q8NDH2 2452 aa5.87□□□□□ -1.47
SYNE1-213ENST00000448038 IGKV3OR2-268A0A0C4DH90 116 aa5.87□□□□□ -1.47
SYNE1-213ENST00000448038 F2Z2F3 143 aa5.87□□□□□ -1.47
SYNE1-213ENST00000448038 DEFB131AP59861 70 aa5.87□□□□□ -1.47
SYNE1-213ENST00000448038 CACNG7P62955 275 aa5.87□□□□□ -1.47
SYNE1-213ENST00000448038 NPBQ8NG41 125 aa5.87□□□□□ -1.47
SYNE1-213ENST00000448038 FNDC4Q9H6D8 234 aaPredicted RBP5.87□□□□□ -1.47
SYNE1-213ENST00000448038 FOLR2P14207 255 aa5.87□□□□□ -1.47
SYNE1-213ENST00000448038 CDX1P47902 265 aaPredicted RBP5.87□□□□□ -1.47
SYNE1-213ENST00000448038 LINC00479Q96M42 142 aa5.87□□□□□ -1.47
SYNE1-213ENST00000448038 ATG2AQ2TAZ0 1938 aa5.87□□□□□ -1.47
SYNE1-213ENST00000448038 SRSF9Q13242 221 aaKnown RBP eCLIP5.87□□□□□ -1.47
SYNE1-213ENST00000448038 IGHV7-81A0A0B4J1V7 117 aa5.86□□□□□ -1.47
SYNE1-213ENST00000448038 BLCAPP62952 87 aa5.86□□□□□ -1.47
SYNE1-213ENST00000448038 VAMP3Q15836 100 aa5.86□□□□□ -1.47
SYNE1-213ENST00000448038 TMEM95Q3KNT9 176 aa5.86□□□□□ -1.47
SYNE1-213ENST00000448038 NAV2Q8IVL1 2488 aa5.86□□□□□ -1.47
SYNE1-213ENST00000448038 RNF182Q8N6D2 247 aa5.86□□□□□ -1.47
SYNE1-213ENST00000448038 THAP8Q8NA92 274 aa5.86□□□□□ -1.47
SYNE1-213ENST00000448038 PRDM13Q9H4Q3 707 aa5.86□□□□□ -1.47
SYNE1-213ENST00000448038 ZNF256Q9Y2P7 627 aaPredicted RBP5.86□□□□□ -1.47
SYNE1-213ENST00000448038 H3BUA1 57 aa5.86□□□□□ -1.47
SYNE1-213ENST00000448038 ZNF324O75467 553 aaPredicted RBP5.86□□□□□ -1.47
SYNE1-213ENST00000448038 SNCGO76070 127 aa5.86□□□□□ -1.47
SYNE1-213ENST00000448038 ERCC8Q13216 396 aa5.86□□□□□ -1.47
SYNE1-213ENST00000448038 C1orf194Q5T5A4 169 aa5.86□□□□□ -1.47
SYNE1-213ENST00000448038 SIRPDQ9H106 197 aa5.86□□□□□ -1.47
SYNE1-213ENST00000448038 ZMAT5Q9UDW3 170 aaKnown RBP5.86□□□□□ -1.47
SYNE1-213ENST00000448038 SH2D1AO60880 128 aa5.86□□□□□ -1.47
SYNE1-213ENST00000448038 SCGB1C2P0DMR2 95 aa5.86□□□□□ -1.47
SYNE1-213ENST00000448038 TCTEX1D4Q5JR98 221 aa5.86□□□□□ -1.47
SYNE1-213ENST00000448038 PAPPA-AS1Q5QFB9 102 aa5.86□□□□□ -1.47
SYNE1-213ENST00000448038 CRIP3Q6Q6R5 217 aa5.86□□□□□ -1.47
SYNE1-213ENST00000448038 C18orf15Q96N68 181 aa5.86□□□□□ -1.47
SYNE1-213ENST00000448038 SLC25A2Q9BXI2 301 aa5.86□□□□□ -1.47
SYNE1-213ENST00000448038 LMO4P61968 165 aa5.86□□□□□ -1.47
SYNE1-213ENST00000448038 OR10J3Q5JRS4 329 aa5.86□□□□□ -1.47
SYNE1-213ENST00000448038 ODF3L1Q8IXM7 274 aa5.86□□□□□ -1.47
SYNE1-213ENST00000448038 TMEM242Q9NWH2 141 aa5.86□□□□□ -1.47
SYNE1-213ENST00000448038 PMCHL1Q16048 86 aa5.86□□□□□ -1.47
SYNE1-213ENST00000448038 C5orf30Q96GV9 206 aa5.86□□□□□ -1.47
SYNE1-213ENST00000448038 LY96Q9Y6Y9 160 aa5.86□□□□□ -1.47
SYNE1-213ENST00000448038 TRBV19A0A075B6N1 114 aa5.85□□□□□ -1.47
SYNE1-213ENST00000448038 A0A087X0M5 115 aa5.85□□□□□ -1.47
SYNE1-213ENST00000448038 A0A1B0GX30 115 aa5.85□□□□□ -1.47
SYNE1-213ENST00000448038 H3BRN7 92 aa5.85□□□□□ -1.47
SYNE1-213ENST00000448038 SSBP2P81877 361 aaPredicted RBP5.85□□□□□ -1.47
SYNE1-213ENST00000448038 ZNF726P1Q15940 193 aa5.85□□□□□ -1.47
SYNE1-213ENST00000448038 UBE2E2Q96LR5 201 aa5.85□□□□□ -1.47
SYNE1-213ENST00000448038 PCNTO95613 3336 aa5.85□□□□□ -1.47
SYNE1-213ENST00000448038 Q8N9W7 124 aa5.85□□□□□ -1.47
SYNE1-213ENST00000448038 TRGV4A0A0C4DH28 118 aa5.85□□□□□ -1.47
SYNE1-213ENST00000448038 M0R143 59 aa5.85□□□□□ -1.47
SYNE1-213ENST00000448038 ADMP35318 185 aa5.85□□□□□ -1.47
SYNE1-213ENST00000448038 FAM90A2PQ658T7 463 aa5.85□□□□□ -1.47
SYNE1-213ENST00000448038 Q86TA4 180 aa5.85□□□□□ -1.47
SYNE1-213ENST00000448038 GEMIN7Q9H840 131 aaKnown RBP5.85□□□□□ -1.47
SYNE1-213ENST00000448038 IGLV2-14P01704 120 aa5.85□□□□□ -1.47
SYNE1-213ENST00000448038 RCHY1Q96PM5 261 aa5.85□□□□□ -1.47
SYNE1-213ENST00000448038 C7orf71A4D174 169 aa5.84□□□□□ -1.47
SYNE1-213ENST00000448038 LYZL1Q6UWQ5 148 aa5.84□□□□□ -1.47
SYNE1-213ENST00000448038 C8orf86Q6ZUL3 223 aa5.84□□□□□ -1.47
SYNE1-213ENST00000448038 ATP5L2Q7Z4Y8 100 aa5.84□□□□□ -1.47
SYNE1-213ENST00000448038 ZNF491Q8N8L2 437 aa5.84□□□□□ -1.47
SYNE1-213ENST00000448038 ST20Q9HBF5 79 aa5.84□□□□□ -1.47
SYNE1-213ENST00000448038 DEFB121Q5J5C9 76 aa5.84□□□□□ -1.47
SYNE1-213ENST00000448038 TMEM170AQ8WVE7 144 aa5.84□□□□□ -1.47
SYNE1-213ENST00000448038 C1QTNF4Q9BXJ3 329 aa5.84□□□□□ -1.47
SYNE1-213ENST00000448038 GNB1LQ9BYB4 327 aa5.84□□□□□ -1.47
SYNE1-213ENST00000448038 RPLP1P05386 114 aaKnown RBP5.84□□□□□ -1.47
SYNE1-213ENST00000448038 FOXL1Q12952 345 aa5.84□□□□□ -1.47
SYNE1-213ENST00000448038 TMEM101Q96IK0 257 aa5.84□□□□□ -1.47
SYNE1-213ENST00000448038 SCGB3A1Q96QR1 104 aa5.84□□□□□ -1.47
SYNE1-213ENST00000448038 INSP01308 110 aa5.84□□□□□ -1.47
SYNE1-213ENST00000448038 PPBPP02775 128 aa5.84□□□□□ -1.47
SYNE1-213ENST00000448038 PRR20EP86478 221 aa5.84□□□□□ -1.47
SYNE1-213ENST00000448038 PRR20CP86479 221 aa5.84□□□□□ -1.47
SYNE1-213ENST00000448038 PRR20DP86480 221 aa5.84□□□□□ -1.47
SYNE1-213ENST00000448038 PRR20BP86481 221 aa5.84□□□□□ -1.47
SYNE1-213ENST00000448038 PRR20AP86496 221 aa5.84□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 56.2 ms