RNA–Protein interactions for RNA: ENST00000440097.5

LIMD1-202, Transcript of LIM domains containing 1, humanhuman

TSL 5 BASIC

Gene LIMD1, Length 2,773 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1-202ENST00000440097 CST9LQ9H4G1 147 aa11.22□□□□□ -0.61
LIMD1-202ENST00000440097 FBN2P35556 2912 aa11.21□□□□□ -0.61
LIMD1-202ENST00000440097 SH2D7A6NKC9 451 aaPredicted RBP11.21□□□□□ -0.61
LIMD1-202ENST00000440097 C8orf88P0DMB2 117 aa11.21□□□□□ -0.61
LIMD1-202ENST00000440097 CSPG4Q6UVK1 2322 aa11.21□□□□□ -0.61
LIMD1-202ENST00000440097 TMEM238LA0A1B0GVL6 79 aa11.21□□□□□ -0.62
LIMD1-202ENST00000440097 OR2T8A6NH00 312 aa11.21□□□□□ -0.62
LIMD1-202ENST00000440097 OR4C46A6NHA9 309 aa11.21□□□□□ -0.62
LIMD1-202ENST00000440097 OVOL3O00110 214 aa11.21□□□□□ -0.62
LIMD1-202ENST00000440097 COL8A1P27658 744 aa11.21□□□□□ -0.62
LIMD1-202ENST00000440097 CAMPP49913 170 aa11.21□□□□□ -0.62
LIMD1-202ENST00000440097 LMO4P61968 165 aa11.21□□□□□ -0.62
LIMD1-202ENST00000440097 UBE2L3P68036 154 aaKnown RBP11.21□□□□□ -0.62
LIMD1-202ENST00000440097 OCIAD2Q56VL3 154 aa11.21□□□□□ -0.62
LIMD1-202ENST00000440097 MORN5Q5VZ52 161 aa11.21□□□□□ -0.62
LIMD1-202ENST00000440097 RASL11AQ6T310 242 aa11.21□□□□□ -0.62
LIMD1-202ENST00000440097 MBD6Q96DN6 1003 aa11.21□□□□□ -0.62
LIMD1-202ENST00000440097 TMEM70Q9BUB7 260 aa11.21□□□□□ -0.62
LIMD1-202ENST00000440097 NAV2Q8IVL1 2488 aa11.2□□□□□ -0.62
LIMD1-202ENST00000440097 NUDT3O95989 172 aa11.2□□□□□ -0.62
LIMD1-202ENST00000440097 OR1L4Q8NGR5 311 aa11.2□□□□□ -0.62
LIMD1-202ENST00000440097 SIRPDQ9H106 197 aa11.2□□□□□ -0.62
LIMD1-202ENST00000440097 IGKV1D-37A0A075B6S9 117 aa11.2□□□□□ -0.62
LIMD1-202ENST00000440097 A0A1W2PRE2 83 aa11.2□□□□□ -0.62
LIMD1-202ENST00000440097 hDV102S1A0JD36 115 aa11.2□□□□□ -0.62
LIMD1-202ENST00000440097 TMEM11P17152 192 aa11.2□□□□□ -0.62
LIMD1-202ENST00000440097 C5orf64Q2M2E5 130 aa11.2□□□□□ -0.62
LIMD1-202ENST00000440097 URB1-AS1Q96HZ7 61 aa11.2□□□□□ -0.62
LIMD1-202ENST00000440097 ATP5J2P56134 94 aa11.19□□□□□ -0.62
LIMD1-202ENST00000440097 BVES-AS1Q5T3Y7 98 aa11.19□□□□□ -0.62
LIMD1-202ENST00000440097 MINOS1Q5TGZ0 78 aa11.19□□□□□ -0.62
LIMD1-202ENST00000440097 SMIM15Q7Z3B0 74 aa11.19□□□□□ -0.62
LIMD1-202ENST00000440097 MINOS1-NBL1R4GNA1 71 aa11.19□□□□□ -0.62
LIMD1-202ENST00000440097 FAM120AOSQ5T036 256 aa11.19□□□□□ -0.62
LIMD1-202ENST00000440097 PRR27Q6MZM9 219 aa11.19□□□□□ -0.62
LIMD1-202ENST00000440097 LINC00173Q6ZV60 143 aa11.19□□□□□ -0.62
LIMD1-202ENST00000440097 LINC00305Q7Z4B0 112 aa11.19□□□□□ -0.62
LIMD1-202ENST00000440097 NUDT10Q8NFP7 164 aa11.19□□□□□ -0.62
LIMD1-202ENST00000440097 NRGNQ92686 78 aa11.19□□□□□ -0.62
LIMD1-202ENST00000440097 NUDT11Q96G61 164 aa11.19□□□□□ -0.62
LIMD1-202ENST00000440097 GRAMD2BQ96HH9 432 aa11.19□□□□□ -0.62
LIMD1-202ENST00000440097 MRPL32Q9BYC8 188 aaKnown RBP11.19□□□□□ -0.62
LIMD1-202ENST00000440097 MUC21A0A0G2JKD1 596 aa11.18□□□□□ -0.62
LIMD1-202ENST00000440097 MUC21A0A140T8X8 626 aa11.18□□□□□ -0.62
LIMD1-202ENST00000440097 OR2J3O76001 311 aa11.18□□□□□ -0.62
LIMD1-202ENST00000440097 PYYP10082 97 aa11.18□□□□□ -0.62
LIMD1-202ENST00000440097 SAA4P35542 130 aa11.18□□□□□ -0.62
LIMD1-202ENST00000440097 KLF17Q5JT82 389 aaPredicted RBP11.18□□□□□ -0.62
LIMD1-202ENST00000440097 MUC21Q5SSG8 566 aa11.18□□□□□ -0.62
LIMD1-202ENST00000440097 AMMECR1LQ6DCA0 310 aa11.18□□□□□ -0.62
LIMD1-202ENST00000440097 THAP8Q8NA92 274 aa11.18□□□□□ -0.62
LIMD1-202ENST00000440097 PIMREGQ9BSJ6 248 aa11.18□□□□□ -0.62
LIMD1-202ENST00000440097 ST20Q9HBF5 79 aa11.18□□□□□ -0.62
LIMD1-202ENST00000440097 TMEM116Q8NCL8 245 aa11.18□□□□□ -0.62
LIMD1-202ENST00000440097 S4R3C0 116 aa11.18□□□□□ -0.62
LIMD1-202ENST00000440097 IGHV3OR16-10A0A075B7F0 116 aa11.17□□□□□ -0.62
LIMD1-202ENST00000440097 HIGD1CA8MV81 97 aa11.17□□□□□ -0.62
LIMD1-202ENST00000440097 UBE2E1P51965 193 aa11.17□□□□□ -0.62
LIMD1-202ENST00000440097 PAX2Q02962 417 aa11.17□□□□□ -0.62
LIMD1-202ENST00000440097 CLEC2AQ6UVW9 174 aa11.17□□□□□ -0.62
LIMD1-202ENST00000440097 NPBQ8NG41 125 aa11.17□□□□□ -0.62
LIMD1-202ENST00000440097 PERPQ96FX8 193 aa11.17□□□□□ -0.62
LIMD1-202ENST00000440097 UBR5O95071 2799 aaPredicted RBP11.17□□□□□ -0.62
LIMD1-202ENST00000440097 VWC2LB2RUY7 222 aa11.17□□□□□ -0.62
LIMD1-202ENST00000440097 NDUFA3O95167 84 aa11.17□□□□□ -0.62
LIMD1-202ENST00000440097 FAM106CPP0CH98 169 aa11.17□□□□□ -0.62
LIMD1-202ENST00000440097 S100A7P31151 101 aa11.17□□□□□ -0.62
LIMD1-202ENST00000440097 RPS20P60866 119 aaKnown RBP11.17□□□□□ -0.62
LIMD1-202ENST00000440097 PATE2Q6UY27 113 aa11.17□□□□□ -0.62
LIMD1-202ENST00000440097 FAM231DQ6ZW35 169 aa11.17□□□□□ -0.62
LIMD1-202ENST00000440097 DEFB125Q8N687 156 aa11.17□□□□□ -0.62
LIMD1-202ENST00000440097 RASL11BQ9BPW5 248 aa11.17□□□□□ -0.62
LIMD1-202ENST00000440097 PAXXQ9BUH6 204 aa11.17□□□□□ -0.62
LIMD1-202ENST00000440097 SLC25A2Q9BXI2 301 aa11.17□□□□□ -0.62
LIMD1-202ENST00000440097 OOSP1A8MZH6 123 aa11.16□□□□□ -0.62
LIMD1-202ENST00000440097 CRYGCP07315 174 aa11.16□□□□□ -0.62
LIMD1-202ENST00000440097 LYZP61626 148 aa11.16□□□□□ -0.62
LIMD1-202ENST00000440097 HIST2H2BCQ6DN03 193 aa11.16□□□□□ -0.62
LIMD1-202ENST00000440097 SLC25A34Q6PIV7 304 aa11.16□□□□□ -0.62
LIMD1-202ENST00000440097 ARPC1AQ92747 370 aa11.16□□□□□ -0.62
LIMD1-202ENST00000440097 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP11.16□□□□□ -0.622e-6■■■■□ 22.8
LIMD1-202ENST00000440097 LOC102724200A0A096LPH7 203 aaPredicted RBP11.16□□□□□ -0.62
LIMD1-202ENST00000440097 PSMB11A5LHX3 300 aa11.16□□□□□ -0.62
LIMD1-202ENST00000440097 SYS1-DBNDD2H3BUS1 97 aa11.16□□□□□ -0.62
LIMD1-202ENST00000440097 FOXA3P55318 350 aaPredicted RBP11.16□□□□□ -0.62
LIMD1-202ENST00000440097 ZNF843Q8N446 348 aa11.16□□□□□ -0.62
LIMD1-202ENST00000440097 FAM167A-AS1Q96KT0 104 aa11.16□□□□□ -0.62
LIMD1-202ENST00000440097 TRGV9Q99603 122 aa11.16□□□□□ -0.62
LIMD1-202ENST00000440097 ANKRD17O75179 2603 aaKnown RBP11.16□□□□□ -0.62
LIMD1-202ENST00000440097 IGHV4-61A0A0C4DH41 118 aa11.16□□□□□ -0.62
LIMD1-202ENST00000440097 BLNKQ8WV28 456 aa11.16□□□□□ -0.62
LIMD1-202ENST00000440097 IGHV1-24A0A0C4DH33 117 aa11.15□□□□□ -0.62
LIMD1-202ENST00000440097 CRXO43186 299 aaPredicted RBP11.15□□□□□ -0.62
LIMD1-202ENST00000440097 PEX7O00628 323 aa11.15□□□□□ -0.63
LIMD1-202ENST00000440097 PSG9Q00887 426 aa11.15□□□□□ -0.63
LIMD1-202ENST00000440097 ZNF562Q6V9R5 426 aa11.15□□□□□ -0.63
LIMD1-202ENST00000440097 SRSF8Q9BRL6 282 aaKnown RBP11.15□□□□□ -0.63
LIMD1-202ENST00000440097 A0A1B0GXF2 115 aa11.14□□□□□ -0.63
LIMD1-202ENST00000440097 I3L2K1 104 aa11.14□□□□□ -0.63
LIMD1-202ENST00000440097 TCF24Q7RTU0 167 aa11.14□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms