RNA–Protein interactions for RNA: ENST00000437679.3

LIMS3-201, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene LIMS3, Length 1,220 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-201ENST00000437679 DUSP14O95147 198 aaKnown RBP11.01□□□□□ -0.65
LIMS3-201ENST00000437679 PTTG1O95997 202 aa11.01□□□□□ -0.65
LIMS3-201ENST00000437679 CXCL2P19875 107 aa11.01□□□□□ -0.65
LIMS3-201ENST00000437679 NANOS2P60321 138 aaKnown RBP11.01□□□□□ -0.65
LIMS3-201ENST00000437679 LCN15Q6UWW0 184 aa11.01□□□□□ -0.65
LIMS3-201ENST00000437679 CHAC2Q8WUX2 184 aa11.01□□□□□ -0.65
LIMS3-201ENST00000437679 PHLDA1Q8WV24 401 aaPredicted RBP11.01□□□□□ -0.65
LIMS3-201ENST00000437679 PXMP4Q9Y6I8 212 aa11.01□□□□□ -0.65
LIMS3-201ENST00000437679 RBMY1A1P0DJD3 496 aaKnown RBP11□□□□□ -0.65
LIMS3-201ENST00000437679 RBMY1CP0DJD4 496 aa11□□□□□ -0.65
LIMS3-201ENST00000437679 RBMY1FQ15415 496 aaKnown RBP11□□□□□ -0.65
LIMS3-201ENST00000437679 ZNF709Q8N972 641 aa11□□□□□ -0.65
LIMS3-201ENST00000437679 SLC35B3Q9H1N7 401 aa11□□□□□ -0.65
LIMS3-201ENST00000437679 MPC2O95563 127 aa10.99□□□□□ -0.65
LIMS3-201ENST00000437679 CXCL3P19876 107 aa10.99□□□□□ -0.65
LIMS3-201ENST00000437679 CNN1P51911 297 aaKnown RBP10.99□□□□□ -0.65
LIMS3-201ENST00000437679 CLINT1Q14677 625 aa10.99□□□□□ -0.65
LIMS3-201ENST00000437679 PSG3Q16557 428 aa10.99□□□□□ -0.65
LIMS3-201ENST00000437679 MORN5Q5VZ52 161 aa10.99□□□□□ -0.65
LIMS3-201ENST00000437679 THAP6Q8TBB0 222 aa10.99□□□□□ -0.65
LIMS3-201ENST00000437679 SLC50A1Q9BRV3 221 aa10.99□□□□□ -0.65
LIMS3-201ENST00000437679 NPCDR1Q9BY65 106 aa10.99□□□□□ -0.65
LIMS3-201ENST00000437679 HRH4Q9H3N8 390 aa10.99□□□□□ -0.65
LIMS3-201ENST00000437679 GOLT1BQ9Y3E0 138 aa10.99□□□□□ -0.65
LIMS3-201ENST00000437679 ALG5Q9Y673 324 aa10.99□□□□□ -0.65
LIMS3-201ENST00000437679 IGHV3OR16-12A0A075B7B8 117 aa10.98□□□□□ -0.65
LIMS3-201ENST00000437679 A8MTW9 85 aa10.98□□□□□ -0.65
LIMS3-201ENST00000437679 HLA-DMBP28068 263 aa10.98□□□□□ -0.65
LIMS3-201ENST00000437679 ZNF705AQ6ZN79 300 aaPredicted RBP10.98□□□□□ -0.65
LIMS3-201ENST00000437679 NEU1Q99519 415 aa10.98□□□□□ -0.65
LIMS3-201ENST00000437679 LYSTQ99698 3801 aa10.98□□□□□ -0.65
LIMS3-201ENST00000437679 RNF126Q9BV68 326 aa10.98□□□□□ -0.65
LIMS3-201ENST00000437679 PLECQ15149 4684 aaKnown RBP10.97□□□□□ -0.65
LIMS3-201ENST00000437679 TRAV5A0A0B4J249 113 aa10.97□□□□□ -0.65
LIMS3-201ENST00000437679 SMIM9A6NGZ8 99 aa10.97□□□□□ -0.65
LIMS3-201ENST00000437679 AMBPP02760 352 aa10.97□□□□□ -0.65
LIMS3-201ENST00000437679 SNRPCP09234 159 aaKnown RBP10.97□□□□□ -0.65
LIMS3-201ENST00000437679 ZNF705DP0CH99 300 aaPredicted RBP10.97□□□□□ -0.65
LIMS3-201ENST00000437679 ZNF705BP0CI00 300 aaPredicted RBP10.97□□□□□ -0.65
LIMS3-201ENST00000437679 HIST1H1AQ02539 215 aaPredicted RBP10.97□□□□□ -0.65
LIMS3-201ENST00000437679 GUK1Q16774 197 aa10.97□□□□□ -0.65
LIMS3-201ENST00000437679 AMTNQ6UX39 209 aa10.97□□□□□ -0.65
LIMS3-201ENST00000437679 OR11H7Q8NGC8 314 aa10.97□□□□□ -0.65
LIMS3-201ENST00000437679 OR8A1Q8NGG7 326 aa10.97□□□□□ -0.65
LIMS3-201ENST00000437679 ZNF331Q9NQX6 463 aaPredicted RBP10.97□□□□□ -0.65
LIMS3-201ENST00000437679 KCNIP2Q9NS61 270 aa10.97□□□□□ -0.65
LIMS3-201ENST00000437679 PPP1R14DQ9NXH3 145 aa10.97□□□□□ -0.65
LIMS3-201ENST00000437679 ZNF705FA8MVS1 300 aaPredicted RBP10.96□□□□□ -0.65
LIMS3-201ENST00000437679 IGLC2P0DOY2 106 aa10.96□□□□□ -0.65
LIMS3-201ENST00000437679 RHOBP62745 196 aa10.96□□□□□ -0.65
LIMS3-201ENST00000437679 RPUSD4Q96CM3 377 aaKnown RBP10.96□□□□□ -0.65
LIMS3-201ENST00000437679 IGF2BP2-AS1Q96M15 143 aa10.96□□□□□ -0.65
LIMS3-201ENST00000437679 ATP5SQ99766 215 aa10.96□□□□□ -0.65
LIMS3-201ENST00000437679 WDR61Q9GZS3 305 aaKnown RBP10.96□□□□□ -0.65
LIMS3-201ENST00000437679 MBD2Q9UBB5 411 aa10.96□□□□□ -0.65
LIMS3-201ENST00000437679 HSPB11Q9Y547 144 aa10.96□□□□□ -0.65
LIMS3-201ENST00000437679 RFNGQ9Y644 331 aa10.96□□□□□ -0.65
LIMS3-201ENST00000437679 TMEM189A5PLL7 270 aa10.95□□□□□ -0.66
LIMS3-201ENST00000437679 C11orf94C9JXX5 98 aa10.95□□□□□ -0.66
LIMS3-201ENST00000437679 C17orf112F2Z3M2 114 aa10.95□□□□□ -0.66
LIMS3-201ENST00000437679 H3BQ15 152 aa10.95□□□□□ -0.66
LIMS3-201ENST00000437679 H3BTX0 84 aa10.95□□□□□ -0.66
LIMS3-201ENST00000437679 RPL12P30050 165 aaKnown RBP10.95□□□□□ -0.66
LIMS3-201ENST00000437679 SPINK13Q1W4C9 94 aa10.95□□□□□ -0.66
LIMS3-201ENST00000437679 TMEM208Q9BTX3 173 aa10.95□□□□□ -0.66
LIMS3-201ENST00000437679 MED28Q9H204 178 aa10.95□□□□□ -0.66
LIMS3-201ENST00000437679 BOLA2-SMG1P6H3BVE0 249 aa10.94□□□□□ -0.66
LIMS3-201ENST00000437679 M0R2Z0 102 aa10.94□□□□□ -0.66
LIMS3-201ENST00000437679 SLC17A3O00476 420 aa10.94□□□□□ -0.66
LIMS3-201ENST00000437679 IFNA5P01569 189 aa10.94□□□□□ -0.66
LIMS3-201ENST00000437679 HBE1P02100 147 aa10.94□□□□□ -0.66
LIMS3-201ENST00000437679 GCSAMLQ5JQS6 135 aa10.94□□□□□ -0.66
LIMS3-201ENST00000437679 C1orf158Q8N1D5 194 aa10.94□□□□□ -0.66
LIMS3-201ENST00000437679 SCGB1C1Q8TD33 95 aa10.94□□□□□ -0.66
LIMS3-201ENST00000437679 C2CD4CQ8TF44 421 aa10.94□□□□□ -0.66
LIMS3-201ENST00000437679 SAT2Q96F10 170 aaPredicted RBP10.94□□□□□ -0.66
LIMS3-201ENST00000437679 TMEM14CQ9P0S9 112 aa10.94□□□□□ -0.66
LIMS3-201ENST00000437679 ALMS1Q8TCU4 4167 aa10.94□□□□□ -0.66
LIMS3-201ENST00000437679 DNAH1Q9P2D7 4330 aa10.94□□□□□ -0.66
LIMS3-201ENST00000437679 RYR2Q92736 4967 aa10.93□□□□□ -0.66
LIMS3-201ENST00000437679 ZNF253O75346 499 aa10.93□□□□□ -0.66
LIMS3-201ENST00000437679 INSP01308 110 aa10.93□□□□□ -0.66
LIMS3-201ENST00000437679 EMP1P54849 157 aa10.93□□□□□ -0.66
LIMS3-201ENST00000437679 RRN3P1Q2M238 152 aa10.93□□□□□ -0.66
LIMS3-201ENST00000437679 OR10J6PQ8NGY7 276 aa10.93□□□□□ -0.66
LIMS3-201ENST00000437679 LINC00476Q8WZB0 136 aa10.93□□□□□ -0.66
LIMS3-201ENST00000437679 SMIM3Q9BZL3 60 aa10.93□□□□□ -0.66
LIMS3-201ENST00000437679 ZNF586Q9NXT0 402 aa10.93□□□□□ -0.66
LIMS3-201ENST00000437679 CELA1Q9UNI1 258 aa10.93□□□□□ -0.66
LIMS3-201ENST00000437679 LY6G6CO95867 125 aa10.92□□□□□ -0.66
LIMS3-201ENST00000437679 PRB4P10163 310 aaPredicted RBP10.92□□□□□ -0.66
LIMS3-201ENST00000437679 HIST1H1EP10412 219 aaKnown RBP10.92□□□□□ -0.66
LIMS3-201ENST00000437679 FCN2Q15485 313 aa10.92□□□□□ -0.66
LIMS3-201ENST00000437679 Q6ZTC4 211 aa10.92□□□□□ -0.66
LIMS3-201ENST00000437679 TIMM9Q9Y5J7 89 aa10.92□□□□□ -0.66
LIMS3-201ENST00000437679 TRBV19A0A075B6N1 114 aa10.91□□□□□ -0.66
LIMS3-201ENST00000437679 TRAV10A0A0B4J240 114 aa10.91□□□□□ -0.66
LIMS3-201ENST00000437679 LOC102723971A0A1B0GUV8 181 aa10.91□□□□□ -0.66
LIMS3-201ENST00000437679 CRXO43186 299 aaPredicted RBP10.91□□□□□ -0.66
LIMS3-201ENST00000437679 SPART-AS1P0CW21 52 aa10.91□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 66.1 ms