RNA–Protein interactions for RNA: ENST00000429035.1

SDC1-204, Transcript of syndecan 1, humanhuman

TSL 3

Gene SDC1, Length 646 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-204ENST00000429035 DEDD2Q8WXF8 326 aa10.21□□□□□ -0.77
SDC1-204ENST00000429035 C16orf74Q96GX8 76 aa10.21□□□□□ -0.77
SDC1-204ENST00000429035 ARV1Q9H2C2 271 aa10.21□□□□□ -0.77
SDC1-204ENST00000429035 PKD1P98161 4303 aa10.21□□□□□ -0.78
SDC1-204ENST00000429035 A0A087X0K7 114 aa10.2□□□□□ -0.78
SDC1-204ENST00000429035 PLAC8L1A1L4L8 177 aa10.2□□□□□ -0.78
SDC1-204ENST00000429035 TSPOP30536 169 aa10.2□□□□□ -0.78
SDC1-204ENST00000429035 FAM3BP58499 235 aaPredicted RBP10.2□□□□□ -0.78
SDC1-204ENST00000429035 TAS2R60P59551 318 aa10.2□□□□□ -0.78
SDC1-204ENST00000429035 ID3Q02535 119 aa10.2□□□□□ -0.78
SDC1-204ENST00000429035 CCDC190Q86UF4 302 aa10.2□□□□□ -0.78
SDC1-204ENST00000429035 TMEM256Q8N2U0 113 aa10.2□□□□□ -0.78
SDC1-204ENST00000429035 OR10P1Q8NGE3 313 aa10.2□□□□□ -0.78
SDC1-204ENST00000429035 RPUSD4Q96CM3 377 aaKnown RBP10.2□□□□□ -0.78
SDC1-204ENST00000429035 SRRQ9GZT4 340 aa10.2□□□□□ -0.78
SDC1-204ENST00000429035 PMS2P5A8MQ11 134 aa10.19□□□□□ -0.78
SDC1-204ENST00000429035 C16orf90A8MZG2 172 aa10.19□□□□□ -0.78
SDC1-204ENST00000429035 H3BTX0 84 aa10.19□□□□□ -0.78
SDC1-204ENST00000429035 J3KRW8 73 aa10.19□□□□□ -0.78
SDC1-204ENST00000429035 GOSR2O14653 212 aa10.19□□□□□ -0.78
SDC1-204ENST00000429035 NDUFB6O95139 128 aa10.19□□□□□ -0.78
SDC1-204ENST00000429035 OR4E1P0C645 316 aa10.19□□□□□ -0.78
SDC1-204ENST00000429035 CCL18P55774 89 aa10.19□□□□□ -0.78
SDC1-204ENST00000429035 PLP1P60201 277 aa10.19□□□□□ -0.78
SDC1-204ENST00000429035 TNP2Q05952 138 aa10.19□□□□□ -0.78
SDC1-204ENST00000429035 IAH1Q2TAA2 248 aaPredicted RBP10.19□□□□□ -0.78
SDC1-204ENST00000429035 TEPPQ6URK8 271 aa10.19□□□□□ -0.78
SDC1-204ENST00000429035 ZNF546Q86UE3 836 aa10.19□□□□□ -0.78
SDC1-204ENST00000429035 RNF141Q8WVD5 230 aa10.19□□□□□ -0.78
SDC1-204ENST00000429035 PARD6GQ9BYG4 376 aaPredicted RBP10.19□□□□□ -0.78
SDC1-204ENST00000429035 NPVFQ9HCQ7 196 aa10.19□□□□□ -0.78
SDC1-204ENST00000429035 NOP10Q9NPE3 64 aaKnown RBP10.19□□□□□ -0.78
SDC1-204ENST00000429035 GSKIPQ9P0R6 139 aa10.19□□□□□ -0.78
SDC1-204ENST00000429035 NBDYA0A0U1RRE5 68 aa10.18□□□□□ -0.78
SDC1-204ENST00000429035 NAP1L6A6NFF2 107 aa10.18□□□□□ -0.78
SDC1-204ENST00000429035 COX7A2P2O60397 106 aa10.18□□□□□ -0.78
SDC1-204ENST00000429035 CDKN1BP46527 198 aa10.18□□□□□ -0.78
SDC1-204ENST00000429035 LCN15Q6UWW0 184 aa10.18□□□□□ -0.78
SDC1-204ENST00000429035 TMEM14EPQ6UXP3 125 aa10.18□□□□□ -0.78
SDC1-204ENST00000429035 LINC00305Q7Z4B0 112 aa10.18□□□□□ -0.78
SDC1-204ENST00000429035 C6orf223Q8N319 242 aa10.18□□□□□ -0.78
SDC1-204ENST00000429035 SMIM8Q96KF7 97 aa10.18□□□□□ -0.78
SDC1-204ENST00000429035 TIMM8BQ9Y5J9 83 aaPredicted RBP10.18□□□□□ -0.78
SDC1-204ENST00000429035 CBY3A6NI87 242 aa10.17□□□□□ -0.78
SDC1-204ENST00000429035 OR5I1Q13606 314 aa10.17□□□□□ -0.78
SDC1-204ENST00000429035 PATE2Q6UY27 113 aa10.17□□□□□ -0.78
SDC1-204ENST00000429035 ZBTB8BQ8NAP8 495 aaPredicted RBP10.17□□□□□ -0.78
SDC1-204ENST00000429035 ZNRF2Q8NHG8 242 aa10.17□□□□□ -0.78
SDC1-204ENST00000429035 TMEM263Q8WUH6 116 aaKnown RBP10.17□□□□□ -0.78
SDC1-204ENST00000429035 SLC50A1Q9BRV3 221 aa10.17□□□□□ -0.78
SDC1-204ENST00000429035 RNF24Q9Y225 148 aa10.17□□□□□ -0.78
SDC1-204ENST00000429035 RCL1Q9Y2P8 373 aaKnown RBP10.17□□□□□ -0.78
SDC1-204ENST00000429035 L7N2F9 121 aa10.16□□□□□ -0.78
SDC1-204ENST00000429035 CCSO14618 274 aa10.16□□□□□ -0.78
SDC1-204ENST00000429035 AGPAT2O15120 278 aa10.16□□□□□ -0.78
SDC1-204ENST00000429035 CXCL2P19875 107 aa10.16□□□□□ -0.78
SDC1-204ENST00000429035 VAMP2P63027 116 aa10.16□□□□□ -0.78
SDC1-204ENST00000429035 KIR3DS1Q14943 382 aa10.16□□□□□ -0.78
SDC1-204ENST00000429035 BAK1Q16611 211 aa10.16□□□□□ -0.78
SDC1-204ENST00000429035 OR10J6PQ8NGY7 276 aa10.16□□□□□ -0.78
SDC1-204ENST00000429035 ZNF331Q9NQX6 463 aaPredicted RBP10.16□□□□□ -0.78
SDC1-204ENST00000429035 LINC00588Q9Y4M8 146 aa10.16□□□□□ -0.78
SDC1-204ENST00000429035 A0A0J9YY99 117 aa10.15□□□□□ -0.78
SDC1-204ENST00000429035 CENPXA8MT69 81 aa10.15□□□□□ -0.78
SDC1-204ENST00000429035 FNDC10F2Z333 226 aa10.15□□□□□ -0.78
SDC1-204ENST00000429035 H7BYZ3 331 aa10.15□□□□□ -0.78
SDC1-204ENST00000429035 SLC17A3O00476 420 aa10.15□□□□□ -0.78
SDC1-204ENST00000429035 MRPS12O15235 138 aaKnown RBP10.15□□□□□ -0.78
SDC1-204ENST00000429035 TSC22D2O75157 780 aa10.15□□□□□ -0.78
SDC1-204ENST00000429035 BCAP31P51572 246 aa10.15□□□□□ -0.78
SDC1-204ENST00000429035 ARL16Q0P5N6 197 aa10.15□□□□□ -0.78
SDC1-204ENST00000429035 SSX7Q7RTT5 188 aa10.15□□□□□ -0.78
SDC1-204ENST00000429035 BPIFA4PQ86YQ2 179 aa10.15□□□□□ -0.78
SDC1-204ENST00000429035 CCDC28AQ8IWP9 274 aa10.15□□□□□ -0.78
SDC1-204ENST00000429035 RNASE8Q8TDE3 154 aaKnown RBP10.15□□□□□ -0.78
SDC1-204ENST00000429035 LSM5Q9Y4Y9 91 aaKnown RBP10.15□□□□□ -0.78
SDC1-204ENST00000429035 RYR1P21817 5038 aa10.14□□□□□ -0.79
SDC1-204ENST00000429035 GAGE12BA1L429 117 aa10.14□□□□□ -0.79
SDC1-204ENST00000429035 FAM25EA8MYX2 175 aa10.14□□□□□ -0.79
SDC1-204ENST00000429035 SNURFLB1AK76 121 aa10.14□□□□□ -0.79
SDC1-204ENST00000429035 GAGE7O76087 117 aa10.14□□□□□ -0.79
SDC1-204ENST00000429035 RLN2P04090 185 aa10.14□□□□□ -0.79
SDC1-204ENST00000429035 GAGE12FP0CL80 117 aa10.14□□□□□ -0.79
SDC1-204ENST00000429035 GAGE12GP0CL81 117 aa10.14□□□□□ -0.79
SDC1-204ENST00000429035 GAGE12IP0CL82 117 aa10.14□□□□□ -0.79
SDC1-204ENST00000429035 OPCMLQ14982 345 aa10.14□□□□□ -0.79
SDC1-204ENST00000429035 PXDC1Q5TGL8 231 aa10.14□□□□□ -0.79
SDC1-204ENST00000429035 GFI1BQ5VTD9 330 aa10.14□□□□□ -0.79
SDC1-204ENST00000429035 MORN5Q5VZ52 161 aa10.14□□□□□ -0.79
SDC1-204ENST00000429035 C10orf113Q5VZT2 155 aa10.14□□□□□ -0.79
SDC1-204ENST00000429035 ZNF493Q6ZR52 646 aa10.14□□□□□ -0.79
SDC1-204ENST00000429035 GNPNAT1Q96EK6 184 aaPredicted RBP10.14□□□□□ -0.79
SDC1-204ENST00000429035 MGST2Q99735 147 aa10.14□□□□□ -0.79
SDC1-204ENST00000429035 TRAV26-1A0A087WT03 109 aa10.13□□□□□ -0.79
SDC1-204ENST00000429035 PRAC2D3DTV9 90 aa10.13□□□□□ -0.79
SDC1-204ENST00000429035 K7EPK0 472 aa10.13□□□□□ -0.79
SDC1-204ENST00000429035 BTCP35070 178 aa10.13□□□□□ -0.79
SDC1-204ENST00000429035 TAS2R30P59541 319 aa10.13□□□□□ -0.79
SDC1-204ENST00000429035 ZNF846Q147U1 533 aa10.13□□□□□ -0.79
SDC1-204ENST00000429035 C7orf66A4D0T2 115 aa10.12□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms