RNA–Protein interactions for RNA: ENST00000416417.5

USP4-204, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2 BASIC

Gene USP4, Length 1,536 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-204ENST00000416417 LYRM9A8MSI8 78 aa8.12□□□□□ -1.11
USP4-204ENST00000416417 PRAC2D3DTV9 90 aa8.12□□□□□ -1.11
USP4-204ENST00000416417 CCSO14618 274 aa8.12□□□□□ -1.11
USP4-204ENST00000416417 RPL7P18124 248 aaKnown RBP8.12□□□□□ -1.11
USP4-204ENST00000416417 BTCP35070 178 aa8.12□□□□□ -1.11
USP4-204ENST00000416417 INPP1P49441 399 aa8.12□□□□□ -1.11
USP4-204ENST00000416417 DLK1P80370 383 aa8.12□□□□□ -1.11
USP4-204ENST00000416417 TNP2Q05952 138 aa8.12□□□□□ -1.11
USP4-204ENST00000416417 IAH1Q2TAA2 248 aaPredicted RBP8.12□□□□□ -1.11
USP4-204ENST00000416417 C4orf46Q504U0 113 aa8.12□□□□□ -1.11
USP4-204ENST00000416417 MORN5Q5VZ52 161 aa8.12□□□□□ -1.11
USP4-204ENST00000416417 TMEM14EPQ6UXP3 125 aa8.12□□□□□ -1.11
USP4-204ENST00000416417 RPUSD4Q96CM3 377 aaKnown RBP8.12□□□□□ -1.11
USP4-204ENST00000416417 RBM38Q9H0Z9 239 aaKnown RBP8.12□□□□□ -1.11
USP4-204ENST00000416417 ARV1Q9H2C2 271 aa8.12□□□□□ -1.11
USP4-204ENST00000416417 A0A087X0K7 114 aa8.11□□□□□ -1.11
USP4-204ENST00000416417 J3KRW8 73 aa8.11□□□□□ -1.11
USP4-204ENST00000416417 MRPS12O15235 138 aaKnown RBP8.11□□□□□ -1.11
USP4-204ENST00000416417 PLP1P60201 277 aa8.11□□□□□ -1.11
USP4-204ENST00000416417 SPANXN2Q5MJ10 180 aa8.11□□□□□ -1.11
USP4-204ENST00000416417 TRIQKQ629K1 86 aa8.11□□□□□ -1.11
USP4-204ENST00000416417 C15orf53Q8NAA6 179 aa8.11□□□□□ -1.11
USP4-204ENST00000416417 ZBTB8BQ8NAP8 495 aaPredicted RBP8.11□□□□□ -1.11
USP4-204ENST00000416417 SDHCQ99643 169 aaPredicted RBP8.11□□□□□ -1.11
USP4-204ENST00000416417 RCL1Q9Y2P8 373 aaKnown RBP8.11□□□□□ -1.11
USP4-204ENST00000416417 SLC17A3O00476 420 aa8.1□□□□□ -1.11
USP4-204ENST00000416417 TSPOP30536 169 aa8.1□□□□□ -1.11
USP4-204ENST00000416417 S100A7P31151 101 aa8.1□□□□□ -1.11
USP4-204ENST00000416417 SOHLH1Q5JUK2 328 aa8.1□□□□□ -1.11
USP4-204ENST00000416417 OR10P1Q8NGE3 313 aa8.1□□□□□ -1.11
USP4-204ENST00000416417 ZNRF2Q8NHG8 242 aa8.1□□□□□ -1.11
USP4-204ENST00000416417 RNF141Q8WVD5 230 aa8.1□□□□□ -1.11
USP4-204ENST00000416417 NPVFQ9HCQ7 196 aa8.1□□□□□ -1.11
USP4-204ENST00000416417 NOP10Q9NPE3 64 aaKnown RBP8.1□□□□□ -1.11
USP4-204ENST00000416417 MGAT4CQ9UBM8 478 aa8.1□□□□□ -1.11
USP4-204ENST00000416417 GOSR2O14653 212 aa8.09□□□□□ -1.11
USP4-204ENST00000416417 AGPAT2O15120 278 aa8.09□□□□□ -1.11
USP4-204ENST00000416417 MBPP02686 304 aaPredicted RBP8.09□□□□□ -1.11
USP4-204ENST00000416417 ATP5G1P05496 136 aa8.09□□□□□ -1.11
USP4-204ENST00000416417 ATP5G3P48201 142 aa8.09□□□□□ -1.11
USP4-204ENST00000416417 SELENOTP62341 195 aa8.09□□□□□ -1.11
USP4-204ENST00000416417 TEPPQ6URK8 271 aa8.09□□□□□ -1.11
USP4-204ENST00000416417 LINC00305Q7Z4B0 112 aa8.09□□□□□ -1.11
USP4-204ENST00000416417 DEDD2Q8WXF8 326 aa8.09□□□□□ -1.11
USP4-204ENST00000416417 MGST2Q99735 147 aa8.09□□□□□ -1.11
USP4-204ENST00000416417 LINC00588Q9Y4M8 146 aa8.09□□□□□ -1.11
USP4-204ENST00000416417 TRAV5A0A0B4J249 113 aa8.08□□□□□ -1.12
USP4-204ENST00000416417 NBDYA0A0U1RRE5 68 aa8.08□□□□□ -1.12
USP4-204ENST00000416417 C7orf66A4D0T2 115 aa8.08□□□□□ -1.12
USP4-204ENST00000416417 NAP1L6A6NFF2 107 aa8.08□□□□□ -1.12
USP4-204ENST00000416417 CBY3A6NI87 242 aa8.08□□□□□ -1.12
USP4-204ENST00000416417 COX7A2P2O60397 106 aa8.08□□□□□ -1.12
USP4-204ENST00000416417 TAS2R60P59551 318 aa8.08□□□□□ -1.12
USP4-204ENST00000416417 B2MP61769 119 aa8.08□□□□□ -1.12
USP4-204ENST00000416417 TMEM37Q8WXS4 190 aa8.08□□□□□ -1.12
USP4-204ENST00000416417 ZNF331Q9NQX6 463 aaPredicted RBP8.08□□□□□ -1.12
USP4-204ENST00000416417 TIMM8BQ9Y5J9 83 aaPredicted RBP8.08□□□□□ -1.12
USP4-204ENST00000416417 A0A0J9YY99 117 aa8.08□□□□□ -1.12
USP4-204ENST00000416417 H3BQ15 152 aa8.08□□□□□ -1.12
USP4-204ENST00000416417 CDKN1BP46527 198 aa8.08□□□□□ -1.12
USP4-204ENST00000416417 OR5I1Q13606 314 aa8.08□□□□□ -1.12
USP4-204ENST00000416417 OPCMLQ14982 345 aa8.08□□□□□ -1.12
USP4-204ENST00000416417 TMEM256Q8N2U0 113 aa8.08□□□□□ -1.12
USP4-204ENST00000416417 RNASE8Q8TDE3 154 aaKnown RBP8.08□□□□□ -1.12
USP4-204ENST00000416417 C16orf74Q96GX8 76 aa8.08□□□□□ -1.12
USP4-204ENST00000416417 LSM5Q9Y4Y9 91 aaKnown RBP8.08□□□□□ -1.12
USP4-204ENST00000416417 GAGE12BA1L429 117 aa8.07□□□□□ -1.12
USP4-204ENST00000416417 FAM25EA8MYX2 175 aa8.07□□□□□ -1.12
USP4-204ENST00000416417 K7EPK0 472 aa8.07□□□□□ -1.12
USP4-204ENST00000416417 TSC22D2O75157 780 aa8.07□□□□□ -1.12
USP4-204ENST00000416417 GAGE7O76087 117 aa8.07□□□□□ -1.12
USP4-204ENST00000416417 GAGE12FP0CL80 117 aa8.07□□□□□ -1.12
USP4-204ENST00000416417 GAGE12GP0CL81 117 aa8.07□□□□□ -1.12
USP4-204ENST00000416417 GAGE12IP0CL82 117 aa8.07□□□□□ -1.12
USP4-204ENST00000416417 GFI1BQ5VTD9 330 aa8.07□□□□□ -1.12
USP4-204ENST00000416417 MIC13Q5XKP0 118 aa8.07□□□□□ -1.12
USP4-204ENST00000416417 ZNF546Q86UE3 836 aa8.07□□□□□ -1.12
USP4-204ENST00000416417 FAM24AA6NFZ4 105 aa8.06□□□□□ -1.12
USP4-204ENST00000416417 C16orf90A8MZG2 172 aa8.06□□□□□ -1.12
USP4-204ENST00000416417 FNDC10F2Z333 226 aa8.06□□□□□ -1.12
USP4-204ENST00000416417 L7N2F9 121 aa8.06□□□□□ -1.12
USP4-204ENST00000416417 CST7O76096 145 aa8.06□□□□□ -1.12
USP4-204ENST00000416417 IL7P13232 177 aa8.06□□□□□ -1.12
USP4-204ENST00000416417 BCAP31P51572 246 aa8.06□□□□□ -1.12
USP4-204ENST00000416417 TAS2R30P59541 319 aa8.06□□□□□ -1.12
USP4-204ENST00000416417 VAMP2P63027 116 aa8.06□□□□□ -1.12
USP4-204ENST00000416417 CLINT1Q14677 625 aa8.06□□□□□ -1.12
USP4-204ENST00000416417 C10orf113Q5VZT2 155 aa8.06□□□□□ -1.12
USP4-204ENST00000416417 LCN15Q6UWW0 184 aa8.06□□□□□ -1.12
USP4-204ENST00000416417 SSX7Q7RTT5 188 aa8.06□□□□□ -1.12
USP4-204ENST00000416417 BPIFA4PQ86YQ2 179 aa8.06□□□□□ -1.12
USP4-204ENST00000416417 C6orf223Q8N319 242 aa8.06□□□□□ -1.12
USP4-204ENST00000416417 MITD1Q8WV92 249 aa8.06□□□□□ -1.12
USP4-204ENST00000416417 SEC22CQ9BRL7 303 aa8.06□□□□□ -1.12
USP4-204ENST00000416417 TRAV6A0A075B6T7 132 aa8.05□□□□□ -1.12
USP4-204ENST00000416417 TRAV26-1A0A087WT03 109 aa8.05□□□□□ -1.12
USP4-204ENST00000416417 TRAV12-3A0A0B4J271 114 aa8.05□□□□□ -1.12
USP4-204ENST00000416417 CENPXA8MT69 81 aa8.05□□□□□ -1.12
USP4-204ENST00000416417 H7BYZ3 331 aa8.05□□□□□ -1.12
USP4-204ENST00000416417 PLA2G10O15496 165 aa8.05□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms