RNA–Protein interactions for RNA: ENST00000413716.6

CCDC88A-204, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best) BASIC

Gene CCDC88A, Length 9,586 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-204ENST00000413716 ZNF497Q6ZNH5 498 aa11.02□□□□□ -0.65
CCDC88A-204ENST00000413716 TRAV40A0A0B4J280 105 aa11.02□□□□□ -0.65
CCDC88A-204ENST00000413716 B5MCH6 92 aa11.02□□□□□ -0.65
CCDC88A-204ENST00000413716 CELA2AP08217 269 aa11.02□□□□□ -0.65
CCDC88A-204ENST00000413716 LIME1Q9H400 295 aa11.02□□□□□ -0.65
CCDC88A-204ENST00000413716 A0A0G2JK05 382 aa11.01□□□□□ -0.65
CCDC88A-204ENST00000413716 I3L3M4 83 aa11.01□□□□□ -0.65
CCDC88A-204ENST00000413716 PROP1O75360 226 aa11.01□□□□□ -0.65
CCDC88A-204ENST00000413716 CTSBP07858 339 aa11.01□□□□□ -0.65
CCDC88A-204ENST00000413716 SPTSSBQ8NFR3 76 aa11.01□□□□□ -0.65
CCDC88A-204ENST00000413716 AHDC1Q5TGY3 1603 aaPredicted RBP11.01□□□□□ -0.65
CCDC88A-204ENST00000413716 UBE2E2Q96LR5 201 aa11.01□□□□□ -0.65
CCDC88A-204ENST00000413716 PRO1854Q9UHT4 67 aa11.01□□□□□ -0.65
CCDC88A-204ENST00000413716 A0A087WWL8 130 aa11.01□□□□□ -0.65
CCDC88A-204ENST00000413716 GREM1O60565 184 aa11.01□□□□□ -0.65
CCDC88A-204ENST00000413716 AGMATQ9BSE5 352 aa11.01□□□□□ -0.65
CCDC88A-204ENST00000413716 C3orf79P0CE67 100 aa11.01□□□□□ -0.65
CCDC88A-204ENST00000413716 CEND1Q8N111 149 aa11.01□□□□□ -0.65
CCDC88A-204ENST00000413716 SPSB2Q99619 263 aa11.01□□□□□ -0.65
CCDC88A-204ENST00000413716 TEX48A0A1B0GUV7 120 aa11.01□□□□□ -0.65
CCDC88A-204ENST00000413716 A0A1W2PPM0 123 aa11.01□□□□□ -0.65
CCDC88A-204ENST00000413716 NDUFS6O75380 124 aaKnown RBP11.01□□□□□ -0.65
CCDC88A-204ENST00000413716 MUSTN1Q8IVN3 82 aa11.01□□□□□ -0.65
CCDC88A-204ENST00000413716 FAM181AQ8N9Y4 354 aa11.01□□□□□ -0.65
CCDC88A-204ENST00000413716 A0A1B0GW64 132 aa11.01□□□□□ -0.65
CCDC88A-204ENST00000413716 ATOX1O00244 68 aa11.01□□□□□ -0.65
CCDC88A-204ENST00000413716 RNASE2P10153 161 aaKnown RBP11.01□□□□□ -0.65
CCDC88A-204ENST00000413716 METRNQ9UJH8 293 aa11.01□□□□□ -0.65
CCDC88A-204ENST00000413716 NDUFB1O75438 58 aa11□□□□□ -0.65
CCDC88A-204ENST00000413716 PAPPAQ13219 1627 aa11□□□□□ -0.65
CCDC88A-204ENST00000413716 BVES-AS1Q5T3Y7 98 aa11□□□□□ -0.65
CCDC88A-204ENST00000413716 C2orf16Q68DN1 1984 aa11□□□□□ -0.65
CCDC88A-204ENST00000413716 TRGV9Q99603 122 aa11□□□□□ -0.65
CCDC88A-204ENST00000413716 TP53TG1Q9Y2A0 90 aa11□□□□□ -0.65
CCDC88A-204ENST00000413716 VWA8A3KMH1 1905 aa11□□□□□ -0.65
CCDC88A-204ENST00000413716 A0A1B0GX51 115 aa11□□□□□ -0.65
CCDC88A-204ENST00000413716 FAM216BQ8N7L0 139 aa11□□□□□ -0.65
CCDC88A-204ENST00000413716 LOC101059948A0A1B0GTJ6 334 aa10.99□□□□□ -0.65
CCDC88A-204ENST00000413716 SRSF7Q16629 238 aaKnown RBP eCLIP10.99□□□□□ -0.65
CCDC88A-204ENST00000413716 MORN2Q502X0 79 aa10.99□□□□□ -0.65
CCDC88A-204ENST00000413716 LRP5O75197 1615 aa10.99□□□□□ -0.65
CCDC88A-204ENST00000413716 IGHV2OR16-5A0A0B4J2B6 119 aa10.99□□□□□ -0.65
CCDC88A-204ENST00000413716 IGHV1-24A0A0C4DH33 117 aa10.99□□□□□ -0.65
CCDC88A-204ENST00000413716 C15orf53Q8NAA6 179 aa10.99□□□□□ -0.65
CCDC88A-204ENST00000413716 H3BQ85 93 aa10.99□□□□□ -0.65
CCDC88A-204ENST00000413716 TRAV1-1A0A0B4J248 108 aa10.99□□□□□ -0.65
CCDC88A-204ENST00000413716 FOXS1O43638 330 aa10.99□□□□□ -0.65
CCDC88A-204ENST00000413716 COL5A3P25940 1745 aaPredicted RBP10.99□□□□□ -0.65
CCDC88A-204ENST00000413716 PLXNA3P51805 1871 aa10.99□□□□□ -0.65
CCDC88A-204ENST00000413716 RNF222A6NCQ9 220 aa10.99□□□□□ -0.65
CCDC88A-204ENST00000413716 IL17RELQ6ZVW7 336 aa10.99□□□□□ -0.65
CCDC88A-204ENST00000413716 DENND4CQ5VZ89 1909 aa10.98□□□□□ -0.65
CCDC88A-204ENST00000413716 FNDC10F2Z333 226 aa10.98□□□□□ -0.65
CCDC88A-204ENST00000413716 CECR9P0C854 216 aa10.98□□□□□ -0.65
CCDC88A-204ENST00000413716 SMIM20Q8N5G0 67 aa10.98□□□□□ -0.65
CCDC88A-204ENST00000413716 TRAV12-2A0A075B6T6 113 aa10.98□□□□□ -0.65
CCDC88A-204ENST00000413716 ETDBQ3ZM63 59 aa10.98□□□□□ -0.65
CCDC88A-204ENST00000413716 RIF1Q5UIP0 2472 aaKnown RBP10.98□□□□□ -0.65
CCDC88A-204ENST00000413716 GZMMP51124 257 aa10.98□□□□□ -0.65
CCDC88A-204ENST00000413716 ID3Q02535 119 aa10.98□□□□□ -0.65
CCDC88A-204ENST00000413716 ZNF501Q96CX3 271 aaPredicted RBP10.98□□□□□ -0.65
CCDC88A-204ENST00000413716 C9orf139Q6ZV77 190 aa10.98□□□□□ -0.65
CCDC88A-204ENST00000413716 LINC01551Q86U37 167 aa10.98□□□□□ -0.65
CCDC88A-204ENST00000413716 PLAC1Q9HBJ0 212 aa10.98□□□□□ -0.65
CCDC88A-204ENST00000413716 SIPA1L1O43166 1804 aa10.98□□□□□ -0.65
CCDC88A-204ENST00000413716 LY96Q9Y6Y9 160 aa10.98□□□□□ -0.65
CCDC88A-204ENST00000413716 TAX1BP3O14907 124 aa10.98□□□□□ -0.65
CCDC88A-204ENST00000413716 DEFB130BP0DP73 79 aa10.98□□□□□ -0.65
CCDC88A-204ENST00000413716 DEFB130AP0DP74 79 aa10.98□□□□□ -0.65
CCDC88A-204ENST00000413716 LTBP4Q8N2S1 1624 aa10.97□□□□□ -0.65
CCDC88A-204ENST00000413716 SMKR1H3BMG3 65 aa10.97□□□□□ -0.65
CCDC88A-204ENST00000413716 LYPD1Q8N2G4 141 aa10.97□□□□□ -0.65
CCDC88A-204ENST00000413716 FBLN5Q9UBX5 448 aa10.97□□□□□ -0.65
CCDC88A-204ENST00000413716 BMPERQ8N8U9 685 aa10.97□□□□□ -0.65
CCDC88A-204ENST00000413716 TRBV6-7A0A0A0MS04 114 aa10.97□□□□□ -0.65
CCDC88A-204ENST00000413716 UBE2BP63146 152 aa10.97□□□□□ -0.65
CCDC88A-204ENST00000413716 TMEM256Q8N2U0 113 aa10.97□□□□□ -0.65
CCDC88A-204ENST00000413716 DEFB105AQ8NG35 78 aa10.97□□□□□ -0.65
CCDC88A-204ENST00000413716 IGFBPL1Q8WX77 278 aa10.97□□□□□ -0.65
CCDC88A-204ENST00000413716 CFHR4Q92496 578 aa10.97□□□□□ -0.65
CCDC88A-204ENST00000413716 C1QTNF5Q9BXJ0 243 aa10.97□□□□□ -0.65
CCDC88A-204ENST00000413716 TMEM52Q8NDY8 209 aa10.97□□□□□ -0.65
CCDC88A-204ENST00000413716 PRSS29PA6NIE9 313 aa10.97□□□□□ -0.65
CCDC88A-204ENST00000413716 U3KQE9 123 aa10.97□□□□□ -0.65
CCDC88A-204ENST00000413716 FAM223BA6NKX1 122 aa10.96□□□□□ -0.65
CCDC88A-204ENST00000413716 COX6A1P12074 109 aa10.96□□□□□ -0.65
CCDC88A-204ENST00000413716 FAM223AQ8IWN6 122 aa10.96□□□□□ -0.65
CCDC88A-204ENST00000413716 STPG1Q5TH74 334 aa10.96□□□□□ -0.65
CCDC88A-204ENST00000413716 USMG5Q96IX5 58 aa10.96□□□□□ -0.65
CCDC88A-204ENST00000413716 RNF126Q9BV68 326 aa10.96□□□□□ -0.65
CCDC88A-204ENST00000413716 CRYGCP07315 174 aa10.96□□□□□ -0.66
CCDC88A-204ENST00000413716 IFI6P09912 130 aa10.96□□□□□ -0.66
CCDC88A-204ENST00000413716 PRSS57Q6UWY2 283 aa10.96□□□□□ -0.66
CCDC88A-204ENST00000413716 NRTNQ99748 197 aa10.96□□□□□ -0.66
CCDC88A-204ENST00000413716 A0A1B0GWJ7 208 aa10.96□□□□□ -0.66
CCDC88A-204ENST00000413716 COLCA2A8K830 154 aa10.96□□□□□ -0.66
CCDC88A-204ENST00000413716 PIN1P1O15428 100 aa10.96□□□□□ -0.66
CCDC88A-204ENST00000413716 F5H768 121 aa10.96□□□□□ -0.66
CCDC88A-204ENST00000413716 RS1O15537 224 aa10.96□□□□□ -0.66
CCDC88A-204ENST00000413716 C1QL2Q7Z5L3 287 aa10.95□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 44 ms