RNA–Protein interactions for RNA: ENST00000401394.5

CTCF-202, Transcript of CCCTC-binding factor, humanhuman

TSL 1 (best) BASIC

Gene CTCF, Length 2,978 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-202ENST00000401394 A0A1B0GUT8 65 aa16.58■□□□□ 0.24
CTCF-202ENST00000401394 D6R8Y8 96 aa16.58■□□□□ 0.24
CTCF-202ENST00000401394 INS-IGF2F8WCM5 200 aa16.58■□□□□ 0.24
CTCF-202ENST00000401394 LY6HO94772 140 aa16.58■□□□□ 0.24
CTCF-202ENST00000401394 RALYQ9UKM9 306 aaKnown RBP16.58■□□□□ 0.24
CTCF-202ENST00000401394 NPIPB6E9PJ23 425 aa16.57■□□□□ 0.24
CTCF-202ENST00000401394 HLA-DRB1P01911 266 aa16.57■□□□□ 0.24
CTCF-202ENST00000401394 MEF2CQ06413 473 aaPredicted RBP16.57■□□□□ 0.24
CTCF-202ENST00000401394 STXBP6Q8NFX7 210 aa16.57■□□□□ 0.24
CTCF-202ENST00000401394 A0A0G2JNJ9 132 aa16.57■□□□□ 0.24
CTCF-202ENST00000401394 ZNF492Q9P255 531 aa16.57■□□□□ 0.24
CTCF-202ENST00000401394 Q9UFV3 132 aa16.57■□□□□ 0.24
CTCF-202ENST00000401394 PLGLAQ15195 96 aa16.56■□□□□ 0.24
CTCF-202ENST00000401394 TMEM108Q6UXF1 575 aa16.56■□□□□ 0.24
CTCF-202ENST00000401394 INSIG2Q9Y5U4 225 aa16.56■□□□□ 0.24
CTCF-202ENST00000401394 GAGE12BA1L429 117 aa16.56■□□□□ 0.24
CTCF-202ENST00000401394 HAX1O00165 279 aa16.56■□□□□ 0.24
CTCF-202ENST00000401394 FCGR2BP31994 310 aaPredicted RBP16.56■□□□□ 0.24
CTCF-202ENST00000401394 RHOGP84095 191 aa16.56■□□□□ 0.24
CTCF-202ENST00000401394 TMEM75Q8N9X5 138 aa16.56■□□□□ 0.24
CTCF-202ENST00000401394 JMJD8Q96S16 334 aa16.56■□□□□ 0.24
CTCF-202ENST00000401394 C7orf71A4D174 169 aa16.56■□□□□ 0.24
CTCF-202ENST00000401394 FAM231BA6NCW3 169 aa16.56■□□□□ 0.24
CTCF-202ENST00000401394 RIPPLY3P57055 190 aa16.56■□□□□ 0.24
CTCF-202ENST00000401394 PPP1R27Q86WC6 154 aa16.56■□□□□ 0.24
CTCF-202ENST00000401394 Q8TAT8 98 aa16.56■□□□□ 0.24
CTCF-202ENST00000401394 RASL11BQ9BPW5 248 aa16.56■□□□□ 0.24
CTCF-202ENST00000401394 LINC01545Q5VT33 79 aa16.55■□□□□ 0.24
CTCF-202ENST00000401394 F11RQ9Y624 299 aaKnown RBP16.55■□□□□ 0.24
CTCF-202ENST00000401394 TMEM155Q4W5P6 130 aa16.55■□□□□ 0.24
CTCF-202ENST00000401394 FA2HQ7L5A8 372 aa16.55■□□□□ 0.24
CTCF-202ENST00000401394 PSG8Q9UQ74 426 aa16.55■□□□□ 0.24
CTCF-202ENST00000401394 ATRXP46100 2492 aa16.55■□□□□ 0.24
CTCF-202ENST00000401394 LYZL1Q6UWQ5 148 aa16.54■□□□□ 0.24
CTCF-202ENST00000401394 OR4A5Q8NH83 315 aa16.54■□□□□ 0.24
CTCF-202ENST00000401394 C18orf15Q96N68 181 aa16.54■□□□□ 0.24
CTCF-202ENST00000401394 OTORQ9NRC9 128 aa16.54■□□□□ 0.24
CTCF-202ENST00000401394 RABAC1Q9UI14 185 aa16.54■□□□□ 0.24
CTCF-202ENST00000401394 IGHV1-3A0A0C4DH29 117 aa16.54■□□□□ 0.24
CTCF-202ENST00000401394 IL4P05112 153 aa16.54■□□□□ 0.24
CTCF-202ENST00000401394 HLA-DMBP28068 263 aa16.54■□□□□ 0.24
CTCF-202ENST00000401394 CACNG7P62955 275 aa16.54■□□□□ 0.24
CTCF-202ENST00000401394 PET117Q6UWS5 81 aa16.54■□□□□ 0.24
CTCF-202ENST00000401394 PCP2Q8IVA1 136 aa16.54■□□□□ 0.24
CTCF-202ENST00000401394 IGKV2-40A0A087WW87 121 aaPredicted RBP16.53■□□□□ 0.24
CTCF-202ENST00000401394 I3L2K1 104 aa16.53■□□□□ 0.24
CTCF-202ENST00000401394 IGKV2D-40P01614 121 aaPredicted RBP16.53■□□□□ 0.24
CTCF-202ENST00000401394 CT83Q5H943 113 aa16.53■□□□□ 0.24
CTCF-202ENST00000401394 SIGLEC8Q9NYZ4 499 aa16.53■□□□□ 0.24
CTCF-202ENST00000401394 MSRB1Q9NZV6 116 aa16.53■□□□□ 0.24
CTCF-202ENST00000401394 CNIH1O95406 144 aa16.53■□□□□ 0.24
CTCF-202ENST00000401394 SAPCD1Q5SSQ6 148 aa16.53■□□□□ 0.24
CTCF-202ENST00000401394 VPS13CQ709C8 3753 aa16.53■□□□□ 0.24
CTCF-202ENST00000401394 TRBV19A0A075B6N1 114 aa16.53■□□□□ 0.24
CTCF-202ENST00000401394 SIGLEC15Q6ZMC9 328 aa16.53■□□□□ 0.24
CTCF-202ENST00000401394 NGBQ9NPG2 151 aa16.53■□□□□ 0.24
CTCF-202ENST00000401394 THYN1Q9P016 225 aa16.53■□□□□ 0.24
CTCF-202ENST00000401394 HSPB8Q9UJY1 196 aa16.53■□□□□ 0.24
CTCF-202ENST00000401394 TNFRSF13BO14836 293 aaPredicted RBP16.52■□□□□ 0.24
CTCF-202ENST00000401394 CRYGBP07316 175 aa16.52■□□□□ 0.24
CTCF-202ENST00000401394 NHLH1Q02575 133 aa16.52■□□□□ 0.24
CTCF-202ENST00000401394 C12orf54Q6X4T0 127 aa16.52■□□□□ 0.24
CTCF-202ENST00000401394 COX8AP10176 69 aa16.52■□□□□ 0.23
CTCF-202ENST00000401394 BPIFA4PQ86YQ2 179 aa16.52■□□□□ 0.23
CTCF-202ENST00000401394 GFRA4Q9GZZ7 299 aa16.52■□□□□ 0.23
CTCF-202ENST00000401394 DYNLRB1Q9NP97 96 aa16.52■□□□□ 0.23
CTCF-202ENST00000401394 ANKHD1Q8IWZ3 2542 aaKnown RBP16.52■□□□□ 0.23
CTCF-202ENST00000401394 C16orf97H3BN30 126 aa16.51■□□□□ 0.23
CTCF-202ENST00000401394 H3BUT2 72 aa16.51■□□□□ 0.23
CTCF-202ENST00000401394 FGF6P10767 208 aa16.51■□□□□ 0.23
CTCF-202ENST00000401394 PPIFP30405 207 aaKnown RBP16.51■□□□□ 0.23
CTCF-202ENST00000401394 HIST1H1AQ02539 215 aaPredicted RBP16.51■□□□□ 0.23
CTCF-202ENST00000401394 PIP4P1Q86T03 277 aa16.51■□□□□ 0.23
CTCF-202ENST00000401394 RNASE6Q93091 150 aaKnown RBP16.51■□□□□ 0.23
CTCF-202ENST00000401394 C1RLQ9NZP8 487 aa16.51■□□□□ 0.23
CTCF-202ENST00000401394 HRNRQ86YZ3 2850 aaPredicted RBP16.51■□□□□ 0.23
CTCF-202ENST00000401394 K7EIM0 57 aa16.5■□□□□ 0.23
CTCF-202ENST00000401394 MC5RP33032 325 aa16.5■□□□□ 0.23
CTCF-202ENST00000401394 LGALS7P47929 136 aa16.5■□□□□ 0.23
CTCF-202ENST00000401394 DKK2Q9UBU2 259 aa16.5■□□□□ 0.23
CTCF-202ENST00000401394 NMUP48645 174 aa16.5■□□□□ 0.23
CTCF-202ENST00000401394 COTL1Q14019 142 aa16.49■□□□□ 0.23
CTCF-202ENST00000401394 TMEM97Q5BJF2 176 aa16.49■□□□□ 0.23
CTCF-202ENST00000401394 NUP37Q8NFH4 326 aa16.49■□□□□ 0.23
CTCF-202ENST00000401394 CD5LO43866 347 aa16.49■□□□□ 0.23
CTCF-202ENST00000401394 PRR30Q53SZ7 412 aaPredicted RBP16.49■□□□□ 0.23
CTCF-202ENST00000401394 LINC00311Q8N616 119 aa16.49■□□□□ 0.23
CTCF-202ENST00000401394 ZNF491Q8N8L2 437 aa16.49■□□□□ 0.23
CTCF-202ENST00000401394 E7EQL1 145 aa16.48■□□□□ 0.23
CTCF-202ENST00000401394 C16orf54Q6UWD8 224 aa16.48■□□□□ 0.23
CTCF-202ENST00000401394 SOX21Q9Y651 276 aaPredicted RBP16.48■□□□□ 0.23
CTCF-202ENST00000401394 NPIPB5A8MRT5 1133 aa16.48■□□□□ 0.23
CTCF-202ENST00000401394 BUB1B-PAK6H3BSN5 160 aa16.48■□□□□ 0.23
CTCF-202ENST00000401394 ZNF80P51504 273 aaPredicted RBP16.48■□□□□ 0.23
CTCF-202ENST00000401394 PSG3Q16557 428 aa16.48■□□□□ 0.23
CTCF-202ENST00000401394 FAM71F2Q6NXP2 309 aa16.48■□□□□ 0.23
CTCF-202ENST00000401394 OR10AG1Q8NH19 301 aa16.48■□□□□ 0.23
CTCF-202ENST00000401394 SMIM12Q96EX1 92 aa16.48■□□□□ 0.23
CTCF-202ENST00000401394 MEGF9Q9H1U4 602 aa16.48■□□□□ 0.23
CTCF-202ENST00000401394 TIMM23O14925 209 aa16.47■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms