RNA–Protein interactions for RNA: ENST00000398640.6

PCDHA11-201, Transcript of protocadherin alpha 11, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene PCDHA11, Length 6,115 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA11-201ENST00000398640 TRGV9Q99603 122 aa11.53□□□□□ -0.56
PCDHA11-201ENST00000398640 ATP6V0E1O15342 81 aa11.52□□□□□ -0.56
PCDHA11-201ENST00000398640 ALPK2Q86TB3 2170 aa11.52□□□□□ -0.56
PCDHA11-201ENST00000398640 TRAV8-1A0A0A6YYK1 113 aa11.52□□□□□ -0.56
PCDHA11-201ENST00000398640 IGKV1-5P01602 117 aa11.52□□□□□ -0.56
PCDHA11-201ENST00000398640 ADORA2A-AS1P86434 159 aa11.52□□□□□ -0.56
PCDHA11-201ENST00000398640 CSTL1Q9H114 145 aa11.52□□□□□ -0.56
PCDHA11-201ENST00000398640 EREGO14944 169 aa11.52□□□□□ -0.57
PCDHA11-201ENST00000398640 C6orf226Q5I0X4 101 aa11.52□□□□□ -0.57
PCDHA11-201ENST00000398640 LAMTOR2Q9Y2Q5 125 aa11.52□□□□□ -0.57
PCDHA11-201ENST00000398640 FOXL2NBQ6ZUU3 175 aa11.52□□□□□ -0.57
PCDHA11-201ENST00000398640 MEGF9Q9H1U4 602 aa11.52□□□□□ -0.57
PCDHA11-201ENST00000398640 C9orf139Q6ZV77 190 aa11.52□□□□□ -0.57
PCDHA11-201ENST00000398640 DAZ1Q9NQZ3 744 aaKnown RBP11.52□□□□□ -0.57
PCDHA11-201ENST00000398640 TMEM190Q8WZ59 177 aa11.51□□□□□ -0.57
PCDHA11-201ENST00000398640 LAMTOR3Q9UHA4 124 aa11.51□□□□□ -0.57
PCDHA11-201ENST00000398640 IGHV2-70DA0A0C4DH43 119 aa11.51□□□□□ -0.57
PCDHA11-201ENST00000398640 SMKR1H3BMG3 65 aa11.51□□□□□ -0.57
PCDHA11-201ENST00000398640 Q6P435 159 aa11.51□□□□□ -0.57
PCDHA11-201ENST00000398640 ADAMTS9Q9P2N4 1935 aa11.51□□□□□ -0.57
PCDHA11-201ENST00000398640 CHCHD1Q96BP2 118 aaKnown RBP11.51□□□□□ -0.57
PCDHA11-201ENST00000398640 TRAV8-4A0A0B4J246 113 aa11.51□□□□□ -0.57
PCDHA11-201ENST00000398640 TOMM40O96008 361 aa11.51□□□□□ -0.57
PCDHA11-201ENST00000398640 KNCNA6PVL3 124 aa11.51□□□□□ -0.57
PCDHA11-201ENST00000398640 NTF4P34130 210 aa11.51□□□□□ -0.57
PCDHA11-201ENST00000398640 PSG3Q16557 428 aa11.51□□□□□ -0.57
PCDHA11-201ENST00000398640 AGMATQ9BSE5 352 aa11.51□□□□□ -0.57
PCDHA11-201ENST00000398640 COL6A6A6NMZ7 2263 aa11.5□□□□□ -0.57
PCDHA11-201ENST00000398640 TRAV9-2A0A087WT02 112 aa11.5□□□□□ -0.57
PCDHA11-201ENST00000398640 IGHV3-16A0A0C4DH30 117 aa11.5□□□□□ -0.57
PCDHA11-201ENST00000398640 PRTN3P24158 256 aa11.5□□□□□ -0.57
PCDHA11-201ENST00000398640 RNF5Q99942 180 aa11.5□□□□□ -0.57
PCDHA11-201ENST00000398640 CXCL1P09341 107 aa11.5□□□□□ -0.57
PCDHA11-201ENST00000398640 UBE2E1P51965 193 aa11.5□□□□□ -0.57
PCDHA11-201ENST00000398640 LINC00477Q96M19 166 aa11.5□□□□□ -0.57
PCDHA11-201ENST00000398640 ETV2O00321 342 aaPredicted RBP11.5□□□□□ -0.57
PCDHA11-201ENST00000398640 IGKV1-16P04430 117 aa11.5□□□□□ -0.57
PCDHA11-201ENST00000398640 FGF16O43320 207 aa11.5□□□□□ -0.57
PCDHA11-201ENST00000398640 DKK1O94907 266 aa11.5□□□□□ -0.57
PCDHA11-201ENST00000398640 MUC6Q6W4X9 2439 aa11.5□□□□□ -0.57
PCDHA11-201ENST00000398640 ERG28Q9UKR5 140 aa11.49□□□□□ -0.57
PCDHA11-201ENST00000398640 LOC105371267A0A1B0GV96 52 aa11.49□□□□□ -0.57
PCDHA11-201ENST00000398640 MBD3L1Q8WWY6 194 aa11.49□□□□□ -0.57
PCDHA11-201ENST00000398640 G3V318 75 aa11.49□□□□□ -0.57
PCDHA11-201ENST00000398640 NAA38Q9BRA0 125 aaKnown RBP11.49□□□□□ -0.57
PCDHA11-201ENST00000398640 SUPT4H1P63272 117 aaKnown RBP11.48□□□□□ -0.57
PCDHA11-201ENST00000398640 LHFPL1Q86WI0 220 aa11.48□□□□□ -0.57
PCDHA11-201ENST00000398640 MYO7BQ6PIF6 2116 aa11.48□□□□□ -0.57
PCDHA11-201ENST00000398640 A0A096LPF7 62 aa11.48□□□□□ -0.57
PCDHA11-201ENST00000398640 APOC4P55056 127 aa11.48□□□□□ -0.57
PCDHA11-201ENST00000398640 SSBP2P81877 361 aaPredicted RBP11.48□□□□□ -0.57
PCDHA11-201ENST00000398640 ZNF843Q8N446 348 aa11.48□□□□□ -0.57
PCDHA11-201ENST00000398640 ZNF625Q96I27 306 aaPredicted RBP11.48□□□□□ -0.57
PCDHA11-201ENST00000398640 ORAOV1Q8WV07 137 aa11.48□□□□□ -0.57
PCDHA11-201ENST00000398640 SPRY4Q9C004 299 aa11.48□□□□□ -0.57
PCDHA11-201ENST00000398640 KLK9Q9UKQ9 250 aa11.48□□□□□ -0.57
PCDHA11-201ENST00000398640 RASL10AQ92737 203 aa11.48□□□□□ -0.57
PCDHA11-201ENST00000398640 COL4A3Q01955 1670 aa11.48□□□□□ -0.57
PCDHA11-201ENST00000398640 HIST1H2BKO60814 126 aa11.48□□□□□ -0.57
PCDHA11-201ENST00000398640 HIST1H2BJP06899 126 aa11.48□□□□□ -0.57
PCDHA11-201ENST00000398640 HIST1H2BOP23527 126 aa11.48□□□□□ -0.57
PCDHA11-201ENST00000398640 HIST1H2BBP33778 126 aa11.48□□□□□ -0.57
PCDHA11-201ENST00000398640 PAX9P55771 341 aa11.48□□□□□ -0.57
PCDHA11-201ENST00000398640 HIST1H2BDP58876 126 aa11.48□□□□□ -0.57
PCDHA11-201ENST00000398640 HIST1H2BCP62807 126 aa11.48□□□□□ -0.57
PCDHA11-201ENST00000398640 HIST2H2BEQ16778 126 aa11.48□□□□□ -0.57
PCDHA11-201ENST00000398640 HIST2H2BFQ5QNW6 126 aaPredicted RBP11.48□□□□□ -0.57
PCDHA11-201ENST00000398640 Q8TCH9 128 aa11.48□□□□□ -0.57
PCDHA11-201ENST00000398640 HIST1H2BHQ93079 126 aa11.48□□□□□ -0.57
PCDHA11-201ENST00000398640 HIST1H2BNQ99877 126 aa11.48□□□□□ -0.57
PCDHA11-201ENST00000398640 HIST1H2BMQ99879 126 aa11.48□□□□□ -0.57
PCDHA11-201ENST00000398640 ATXN8Q156A1 80 aa11.47□□□□□ -0.57
PCDHA11-201ENST00000398640 SPINK13Q1W4C9 94 aa11.47□□□□□ -0.57
PCDHA11-201ENST00000398640 MCRIP2Q9BUT9 160 aaKnown RBP11.47□□□□□ -0.57
PCDHA11-201ENST00000398640 VCYO14598 125 aa11.47□□□□□ -0.57
PCDHA11-201ENST00000398640 SS18Q15532 418 aa11.47□□□□□ -0.57
PCDHA11-201ENST00000398640 GAGE12JA6NER3 117 aa11.47□□□□□ -0.57
PCDHA11-201ENST00000398640 TMEM238C9JI98 176 aa11.47□□□□□ -0.57
PCDHA11-201ENST00000398640 F8WEM9 126 aa11.47□□□□□ -0.57
PCDHA11-201ENST00000398640 PCP4P48539 62 aa11.47□□□□□ -0.57
PCDHA11-201ENST00000398640 GAGE1Q13065 139 aa11.47□□□□□ -0.57
PCDHA11-201ENST00000398640 GAGE4Q13068 117 aa11.47□□□□□ -0.57
PCDHA11-201ENST00000398640 GAGE5Q13069 117 aa11.47□□□□□ -0.57
PCDHA11-201ENST00000398640 GAGE13Q4V321 117 aa11.47□□□□□ -0.57
PCDHA11-201ENST00000398640 SPXQ9BT56 116 aa11.47□□□□□ -0.57
PCDHA11-201ENST00000398640 HIST1H4AP62805 103 aaKnown RBP11.47□□□□□ -0.57
PCDHA11-201ENST00000398640 MST1LQ2TV78 715 aa11.47□□□□□ -0.57
PCDHA11-201ENST00000398640 NUP35Q8NFH5 326 aa11.47□□□□□ -0.57
PCDHA11-201ENST00000398640 CFHR2P36980 270 aa11.46□□□□□ -0.57
PCDHA11-201ENST00000398640 MTURNQ8N3F0 131 aa11.46□□□□□ -0.57
PCDHA11-201ENST00000398640 HS3ST6Q96QI5 342 aa11.46□□□□□ -0.57
PCDHA11-201ENST00000398640 GVINP1Q7Z2Y8 2422 aa11.46□□□□□ -0.57
PCDHA11-201ENST00000398640 GAGE12BA1L429 117 aa11.46□□□□□ -0.57
PCDHA11-201ENST00000398640 GAGE7O76087 117 aa11.46□□□□□ -0.57
PCDHA11-201ENST00000398640 GAGE12FP0CL80 117 aa11.46□□□□□ -0.57
PCDHA11-201ENST00000398640 GAGE12GP0CL81 117 aa11.46□□□□□ -0.57
PCDHA11-201ENST00000398640 GAGE12IP0CL82 117 aa11.46□□□□□ -0.57
PCDHA11-201ENST00000398640 ZNF479Q96JC4 524 aa11.46□□□□□ -0.57
PCDHA11-201ENST00000398640 AKAP6Q13023 2319 aa11.46□□□□□ -0.57
PCDHA11-201ENST00000398640 LHBP01229 141 aa11.46□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 44.1 ms