RNA–Protein interactions for RNA: ENST00000394943.7

LIMA1-202, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,669 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-202ENST00000394943 OXLD1Q5BKU9 147 aa5.18□□□□□ -1.58
LIMA1-202ENST00000394943 CSNK1G2-AS1Q8NCQ2 148 aa5.18□□□□□ -1.58
LIMA1-202ENST00000394943 ARL6Q9H0F7 186 aa5.18□□□□□ -1.58
LIMA1-202ENST00000394943 LENEPQ9Y5L5 61 aa5.18□□□□□ -1.58
LIMA1-202ENST00000394943 HLA-DRB4X5D2U9 266 aa5.18□□□□□ -1.58
LIMA1-202ENST00000394943 KANTRA0A1W2PQU2 76 aa5.18□□□□□ -1.58
LIMA1-202ENST00000394943 H3BQ15 152 aa5.18□□□□□ -1.58
LIMA1-202ENST00000394943 GIG44P09565 113 aaPredicted RBP5.18□□□□□ -1.58
LIMA1-202ENST00000394943 PSG9Q00887 426 aa5.18□□□□□ -1.58
LIMA1-202ENST00000394943 MORN3Q6PF18 240 aaPredicted RBP5.18□□□□□ -1.58
LIMA1-202ENST00000394943 C9orf47Q6ZRZ4 202 aa5.18□□□□□ -1.58
LIMA1-202ENST00000394943 FAM24BQ8N5W8 94 aa5.18□□□□□ -1.58
LIMA1-202ENST00000394943 ZNF709Q8N972 641 aa5.18□□□□□ -1.58
LIMA1-202ENST00000394943 NEU1Q99519 415 aa5.18□□□□□ -1.58
LIMA1-202ENST00000394943 RPRMQ9NS64 109 aa5.18□□□□□ -1.58
LIMA1-202ENST00000394943 PKD1L1Q8TDX9 2849 aa5.17□□□□□ -1.58
LIMA1-202ENST00000394943 A0A1W2PRE2 83 aa5.17□□□□□ -1.58
LIMA1-202ENST00000394943 TAS2R45P59539 299 aa5.17□□□□□ -1.58
LIMA1-202ENST00000394943 MIR17HGQ75NE6 70 aa5.17□□□□□ -1.58
LIMA1-202ENST00000394943 SREK1IP1Q8N9Q2 155 aaPredicted RBP5.17□□□□□ -1.58
LIMA1-202ENST00000394943 LRRC20Q8TCA0 184 aa5.17□□□□□ -1.58
LIMA1-202ENST00000394943 C20orf173Q96LM9 149 aa5.17□□□□□ -1.58
LIMA1-202ENST00000394943 B9D2Q9BPU9 175 aa5.17□□□□□ -1.58
LIMA1-202ENST00000394943 TXNDC17Q9BRA2 123 aa5.17□□□□□ -1.58
LIMA1-202ENST00000394943 OR51M1Q9H341 326 aa5.17□□□□□ -1.58
LIMA1-202ENST00000394943 ATRQ13535 2644 aa5.17□□□□□ -1.58
LIMA1-202ENST00000394943 CXorf1O96002 111 aa5.17□□□□□ -1.58
LIMA1-202ENST00000394943 CRISP2P16562 243 aa5.17□□□□□ -1.58
LIMA1-202ENST00000394943 PPT1P50897 306 aa5.17□□□□□ -1.58
LIMA1-202ENST00000394943 RAB2AP61019 212 aa5.17□□□□□ -1.58
LIMA1-202ENST00000394943 OR10G4Q8NGN3 311 aa5.17□□□□□ -1.58
LIMA1-202ENST00000394943 OR10G9Q8NGN4 311 aa5.17□□□□□ -1.58
LIMA1-202ENST00000394943 OR10G7Q8NGN6 311 aa5.17□□□□□ -1.58
LIMA1-202ENST00000394943 C20orf144Q9BQM9 153 aa5.17□□□□□ -1.58
LIMA1-202ENST00000394943 NKX6-2Q9C056 277 aaPredicted RBP5.17□□□□□ -1.58
LIMA1-202ENST00000394943 KLF12Q9Y4X4 402 aa5.17□□□□□ -1.58
LIMA1-202ENST00000394943 A0A0J9YX75 114 aa5.17□□□□□ -1.58
LIMA1-202ENST00000394943 PAFAH1B2P68402 229 aa5.17□□□□□ -1.58
LIMA1-202ENST00000394943 GCSAMLQ5JQS6 135 aa5.17□□□□□ -1.58
LIMA1-202ENST00000394943 DYNLRB2Q8TF09 96 aa5.17□□□□□ -1.58
LIMA1-202ENST00000394943 ACTR3CQ9C0K3 210 aaPredicted RBP5.17□□□□□ -1.58
LIMA1-202ENST00000394943 RBMY1BA6NDE4 496 aaKnown RBP5.16□□□□□ -1.58
LIMA1-202ENST00000394943 RBMY1EA6NEQ0 496 aaKnown RBP5.16□□□□□ -1.58
LIMA1-202ENST00000394943 RBMY1DP0C7P1 496 aaKnown RBP5.16□□□□□ -1.58
LIMA1-202ENST00000394943 PSG3Q16557 428 aa5.16□□□□□ -1.58
LIMA1-202ENST00000394943 C11orf52Q96A22 123 aa5.16□□□□□ -1.58
LIMA1-202ENST00000394943 OTORQ9NRC9 128 aa5.16□□□□□ -1.58
LIMA1-202ENST00000394943 TMEM167BQ9NRX6 74 aa5.16□□□□□ -1.58
LIMA1-202ENST00000394943 COL6A5A8TX70 2615 aa5.16□□□□□ -1.58
LIMA1-202ENST00000394943 AMBPP02760 352 aa5.16□□□□□ -1.58
LIMA1-202ENST00000394943 NHLRC4P0CG21 123 aaPredicted RBP5.16□□□□□ -1.58
LIMA1-202ENST00000394943 CDC34P49427 236 aaPredicted RBP5.16□□□□□ -1.58
LIMA1-202ENST00000394943 EIF5AL1Q6IS14 154 aaKnown RBP5.16□□□□□ -1.58
LIMA1-202ENST00000394943 TMA7Q9Y2S6 64 aaKnown RBP5.16□□□□□ -1.58
LIMA1-202ENST00000394943 RFNGQ9Y644 331 aa5.16□□□□□ -1.58
LIMA1-202ENST00000394943 MEGF8Q7Z7M0 2845 aa5.16□□□□□ -1.58
LIMA1-202ENST00000394943 ZNF320A2RRD8 509 aa5.16□□□□□ -1.58
LIMA1-202ENST00000394943 ZNF705EA8MWA4 302 aaPredicted RBP5.16□□□□□ -1.58
LIMA1-202ENST00000394943 H3BMM0 161 aa5.16□□□□□ -1.58
LIMA1-202ENST00000394943 ORM2P19652 201 aa5.16□□□□□ -1.58
LIMA1-202ENST00000394943 TAGLN2P37802 199 aaKnown RBP5.16□□□□□ -1.58
LIMA1-202ENST00000394943 ID1P41134 155 aa5.16□□□□□ -1.58
LIMA1-202ENST00000394943 RAB24Q969Q5 203 aa5.16□□□□□ -1.58
LIMA1-202ENST00000394943 GCHFRP30047 84 aa5.15□□□□□ -1.58
LIMA1-202ENST00000394943 RNF141Q8WVD5 230 aa5.15□□□□□ -1.58
LIMA1-202ENST00000394943 UHRF2Q96PU4 802 aa5.15□□□□□ -1.58
LIMA1-202ENST00000394943 SMIM3Q9BZL3 60 aa5.15□□□□□ -1.58
LIMA1-202ENST00000394943 MED9Q9NWA0 146 aa5.15□□□□□ -1.58
LIMA1-202ENST00000394943 TRAV5A0A0B4J249 113 aa5.15□□□□□ -1.59
LIMA1-202ENST00000394943 SLC17A3O00476 420 aa5.15□□□□□ -1.59
LIMA1-202ENST00000394943 RGS13O14921 159 aa5.15□□□□□ -1.59
LIMA1-202ENST00000394943 FAM78BQ5VT40 261 aa5.15□□□□□ -1.59
LIMA1-202ENST00000394943 RBPMS2Q6ZRY4 209 aaKnown RBP5.15□□□□□ -1.59
LIMA1-202ENST00000394943 PAXXQ9BUH6 204 aa5.15□□□□□ -1.59
LIMA1-202ENST00000394943 C20orf24Q9BUV8 137 aa5.15□□□□□ -1.59
LIMA1-202ENST00000394943 PBDC1Q9BVG4 233 aa5.15□□□□□ -1.59
LIMA1-202ENST00000394943 DNAH1Q9P2D7 4330 aa5.15□□□□□ -1.59
LIMA1-202ENST00000394943 IGLV2-11P01706 119 aa5.15□□□□□ -1.59
LIMA1-202ENST00000394943 DNLZQ5SXM8 178 aa5.15□□□□□ -1.59
LIMA1-202ENST00000394943 Q6ZWC4 215 aa5.15□□□□□ -1.59
LIMA1-202ENST00000394943 IL17DQ8TAD2 202 aa5.15□□□□□ -1.59
LIMA1-202ENST00000394943 SMIM12Q96EX1 92 aa5.15□□□□□ -1.59
LIMA1-202ENST00000394943 STAB1Q9NY15 2570 aa5.14□□□□□ -1.59
LIMA1-202ENST00000394943 KLLNB2CW77 178 aa5.14□□□□□ -1.59
LIMA1-202ENST00000394943 NBEAP1P0C6P0 100 aa5.14□□□□□ -1.59
LIMA1-202ENST00000394943 TEX261Q6UWH6 196 aa5.14□□□□□ -1.59
LIMA1-202ENST00000394943 GTSCR1Q86UQ5 136 aa5.14□□□□□ -1.59
LIMA1-202ENST00000394943 TMEM75Q8N9X5 138 aa5.14□□□□□ -1.59
LIMA1-202ENST00000394943 PTH2Q96A98 100 aa5.14□□□□□ -1.59
LIMA1-202ENST00000394943 PAIP2BQ9ULR5 123 aaKnown RBP5.14□□□□□ -1.59
LIMA1-202ENST00000394943 FAM74A7A6NL05 159 aa5.14□□□□□ -1.59
LIMA1-202ENST00000394943 ZNF207O43670 478 aaKnown RBP5.14□□□□□ -1.59
LIMA1-202ENST00000394943 DUSP14O95147 198 aaKnown RBP5.14□□□□□ -1.59
LIMA1-202ENST00000394943 CD7P09564 240 aa5.14□□□□□ -1.59
LIMA1-202ENST00000394943 IGHV4-30-4P0DP06 118 aa5.14□□□□□ -1.59
LIMA1-202ENST00000394943 SNRPD3P62318 126 aaKnown RBP5.14□□□□□ -1.59
LIMA1-202ENST00000394943 ZNF705AQ6ZN79 300 aaPredicted RBP5.14□□□□□ -1.59
LIMA1-202ENST00000394943 IGHV3-35A0A0C4DH35 117 aa5.13□□□□□ -1.59
LIMA1-202ENST00000394943 OR11H12B2RN74 326 aa5.13□□□□□ -1.59
LIMA1-202ENST00000394943 OR8I2Q8N0Y5 310 aa5.13□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms