RNA–Protein interactions for RNA: ENST00000392004.7

COL6A3-205, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 4,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-205ENST00000392004 DLX6P56179 175 aa8.18□□□□□ -1.1
COL6A3-205ENST00000392004 PRCDQ00LT1 54 aa8.18□□□□□ -1.1
COL6A3-205ENST00000392004 ZNF562Q6V9R5 426 aa8.18□□□□□ -1.1
COL6A3-205ENST00000392004 NHLRC2Q8NBF2 726 aa8.18□□□□□ -1.1
COL6A3-205ENST00000392004 OR11H1Q8NG94 326 aa8.18□□□□□ -1.1
COL6A3-205ENST00000392004 SIRPDQ9H106 197 aa8.18□□□□□ -1.1
COL6A3-205ENST00000392004 SNURFLB1AK76 121 aa8.18□□□□□ -1.1
COL6A3-205ENST00000392004 RBFOX2O43251 390 aaKnown RBP eCLIP8.18□□□□□ -1.1
COL6A3-205ENST00000392004 SPATA45Q537H7 98 aa8.18□□□□□ -1.1
COL6A3-205ENST00000392004 TMEM177Q53S58 311 aa8.18□□□□□ -1.1
COL6A3-205ENST00000392004 C8orf86Q6ZUL3 223 aa8.18□□□□□ -1.1
COL6A3-205ENST00000392004 TXNDC17Q9BRA2 123 aa8.18□□□□□ -1.1
COL6A3-205ENST00000392004 PAXXQ9BUH6 204 aa8.18□□□□□ -1.1
COL6A3-205ENST00000392004 UQCR10Q9UDW1 63 aa8.18□□□□□ -1.1
COL6A3-205ENST00000392004 SLC45A2Q9UMX9 530 aa8.18□□□□□ -1.1
COL6A3-205ENST00000392004 NOTCH1P46531 2555 aa8.18□□□□□ -1.1
COL6A3-205ENST00000392004 TMEM167AQ8TBQ9 72 aa8.18□□□□□ -1.1
COL6A3-205ENST00000392004 RNF2Q99496 336 aa8.18□□□□□ -1.1
COL6A3-205ENST00000392004 BET1LQ9NYM9 111 aa8.18□□□□□ -1.1
COL6A3-205ENST00000392004 PMCHP20382 165 aa8.17□□□□□ -1.1
COL6A3-205ENST00000392004 VAMP3Q15836 100 aa8.17□□□□□ -1.1
COL6A3-205ENST00000392004 TMEM144Q7Z5S9 345 aa8.17□□□□□ -1.1
COL6A3-205ENST00000392004 NDFIP1Q9BT67 221 aa8.17□□□□□ -1.1
COL6A3-205ENST00000392004 DERL1Q9BUN8 251 aa8.17□□□□□ -1.1
COL6A3-205ENST00000392004 TECRQ9NZ01 308 aaKnown RBP8.17□□□□□ -1.1
COL6A3-205ENST00000392004 HSPB7Q9UBY9 170 aa8.17□□□□□ -1.1
COL6A3-205ENST00000392004 NAT8BQ9UHF3 227 aa8.17□□□□□ -1.1
COL6A3-205ENST00000392004 ZANQ9Y493 2812 aa8.17□□□□□ -1.1
COL6A3-205ENST00000392004 ZFHX4Q86UP3 3567 aa8.17□□□□□ -1.1
COL6A3-205ENST00000392004 PGPA6NDG6 321 aa8.17□□□□□ -1.1
COL6A3-205ENST00000392004 DNAJC9-AS1A6NH13 148 aa8.17□□□□□ -1.1
COL6A3-205ENST00000392004 YPEL3P61236 119 aaPredicted RBP8.17□□□□□ -1.1
COL6A3-205ENST00000392004 HIST1H1AQ02539 215 aaPredicted RBP8.17□□□□□ -1.1
COL6A3-205ENST00000392004 PAX8Q06710 450 aa8.17□□□□□ -1.1
COL6A3-205ENST00000392004 TDRG1Q3Y452 100 aa8.17□□□□□ -1.1
COL6A3-205ENST00000392004 C10orf99Q6UWK7 81 aa8.17□□□□□ -1.1
COL6A3-205ENST00000392004 ZNF833PQ6ZTB9 187 aa8.17□□□□□ -1.1
COL6A3-205ENST00000392004 BORCS7Q96B45 105 aa8.17□□□□□ -1.1
COL6A3-205ENST00000392004 KLK15Q9H2R5 256 aa8.17□□□□□ -1.1
COL6A3-205ENST00000392004 TRAV9-1A0A075B6T8 112 aa8.17□□□□□ -1.1
COL6A3-205ENST00000392004 TRAV34A0A0B4J273 112 aa8.17□□□□□ -1.1
COL6A3-205ENST00000392004 WT1-ASQ06250 92 aa8.17□□□□□ -1.1
COL6A3-205ENST00000392004 WDR73Q6P4I2 378 aa8.17□□□□□ -1.1
COL6A3-205ENST00000392004 IL36BQ9NZH7 164 aa8.17□□□□□ -1.1
COL6A3-205ENST00000392004 ZNF688P0C7X2 276 aa8.16□□□□□ -1.1
COL6A3-205ENST00000392004 COMPP49747 757 aaPredicted RBP8.16□□□□□ -1.1
COL6A3-205ENST00000392004 MFAP2P55001 183 aa8.16□□□□□ -1.1
COL6A3-205ENST00000392004 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa8.16□□□□□ -1.1
COL6A3-205ENST00000392004 MRAPQ8TCY5 172 aa8.16□□□□□ -1.1
COL6A3-205ENST00000392004 FOXC2Q99958 501 aa8.16□□□□□ -1.1
COL6A3-205ENST00000392004 ZNF439Q8NDP4 499 aa8.16□□□□□ -1.1
COL6A3-205ENST00000392004 OR11H6Q8NGC7 330 aa8.16□□□□□ -1.1
COL6A3-205ENST00000392004 TRAV5A0A0B4J249 113 aa8.16□□□□□ -1.1
COL6A3-205ENST00000392004 CXorf1O96002 111 aa8.16□□□□□ -1.1
COL6A3-205ENST00000392004 IGLV1-47P01700 117 aa8.16□□□□□ -1.1
COL6A3-205ENST00000392004 C1orf229Q6ZS94 237 aaPredicted RBP8.16□□□□□ -1.1
COL6A3-205ENST00000392004 BPIFA4PQ86YQ2 179 aa8.16□□□□□ -1.1
COL6A3-205ENST00000392004 AP1S3Q96PC3 154 aa8.16□□□□□ -1.1
COL6A3-205ENST00000392004 SLC17A3O00476 420 aa8.15□□□□□ -1.1
COL6A3-205ENST00000392004 PSG1P11464 419 aa8.15□□□□□ -1.1
COL6A3-205ENST00000392004 NTF3P20783 257 aa8.15□□□□□ -1.1
COL6A3-205ENST00000392004 SELENOTP62341 195 aa8.15□□□□□ -1.1
COL6A3-205ENST00000392004 PRNTQ86SH4 94 aa8.15□□□□□ -1.1
COL6A3-205ENST00000392004 OCC1Q8TAD7 63 aa8.15□□□□□ -1.1
COL6A3-205ENST00000392004 RNF24Q9Y225 148 aa8.15□□□□□ -1.1
COL6A3-205ENST00000392004 DSCAML1Q8TD84 2053 aa8.15□□□□□ -1.1
COL6A3-205ENST00000392004 A0A1W2PS18 150 aa8.15□□□□□ -1.1
COL6A3-205ENST00000392004 PROP1O75360 226 aa8.15□□□□□ -1.1
COL6A3-205ENST00000392004 ORM1P02763 201 aa8.15□□□□□ -1.1
COL6A3-205ENST00000392004 ARL14EPLP0DKL9 152 aa8.15□□□□□ -1.1
COL6A3-205ENST00000392004 PYYP10082 97 aa8.15□□□□□ -1.1
COL6A3-205ENST00000392004 TCL1AP56279 114 aa8.15□□□□□ -1.1
COL6A3-205ENST00000392004 ZNF114Q8NC26 417 aa8.15□□□□□ -1.1
COL6A3-205ENST00000392004 ASCL2Q99929 193 aa8.15□□□□□ -1.1
COL6A3-205ENST00000392004 SCO2A0A1W2PP80 73 aa8.15□□□□□ -1.11
COL6A3-205ENST00000392004 ZNF253O75346 499 aa8.15□□□□□ -1.11
COL6A3-205ENST00000392004 CD69Q07108 199 aa8.15□□□□□ -1.11
COL6A3-205ENST00000392004 LRRC75A-AS1Q8N1F1 130 aa8.15□□□□□ -1.11
COL6A3-205ENST00000392004 EBLN2Q6P2I7 272 aa8.14□□□□□ -1.11
COL6A3-205ENST00000392004 LAMTOR2Q9Y2Q5 125 aa8.14□□□□□ -1.11
COL6A3-205ENST00000392004 RAI1Q7Z5J4 1906 aaPredicted RBP8.14□□□□□ -1.11
COL6A3-205ENST00000392004 TRBV9A0A0B4J1U6 114 aa8.14□□□□□ -1.11
COL6A3-205ENST00000392004 SERTM2A0A1B0GWG4 89 aa8.14□□□□□ -1.11
COL6A3-205ENST00000392004 E7EUB6 86 aa8.14□□□□□ -1.11
COL6A3-205ENST00000392004 HTN3P15516 51 aa8.14□□□□□ -1.11
COL6A3-205ENST00000392004 Q6ZS46 218 aa8.14□□□□□ -1.11
COL6A3-205ENST00000392004 MUC21A0A0G2JKD1 596 aa8.14□□□□□ -1.11
COL6A3-205ENST00000392004 MUC21A0A140T8X8 626 aa8.14□□□□□ -1.11
COL6A3-205ENST00000392004 MT-ND6P03923 174 aa8.14□□□□□ -1.11
COL6A3-205ENST00000392004 RPL35AP18077 110 aaKnown RBP8.14□□□□□ -1.11
COL6A3-205ENST00000392004 FXYD7P58549 80 aa8.14□□□□□ -1.11
COL6A3-205ENST00000392004 COX19Q49B96 90 aa8.14□□□□□ -1.11
COL6A3-205ENST00000392004 MUC21Q5SSG8 566 aa8.14□□□□□ -1.11
COL6A3-205ENST00000392004 MIR17HGQ75NE6 70 aa8.14□□□□□ -1.11
COL6A3-205ENST00000392004 RNF125Q96EQ8 232 aa8.14□□□□□ -1.11
COL6A3-205ENST00000392004 C5orf30Q96GV9 206 aa8.14□□□□□ -1.11
COL6A3-205ENST00000392004 NRN1Q9NPD7 142 aa8.14□□□□□ -1.11
COL6A3-205ENST00000392004 MPDU1O75352 247 aa8.13□□□□□ -1.11
COL6A3-205ENST00000392004 F11RQ9Y624 299 aaKnown RBP8.13□□□□□ -1.11
COL6A3-205ENST00000392004 Q0VG73 95 aa8.13□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 90.8 ms