RNA–Protein interactions for RNA: ENST00000377348.6

VPS28-202, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS28, Length 1,097 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-202ENST00000377348 OR4B1Q8NGF8 309 aa9.77□□□□□ -0.85
VPS28-202ENST00000377348 LRRC20Q8TCA0 184 aa9.77□□□□□ -0.85
VPS28-202ENST00000377348 RPRMQ9NS64 109 aa9.77□□□□□ -0.85
VPS28-202ENST00000377348 CLEC5AQ9NY25 188 aa9.77□□□□□ -0.85
VPS28-202ENST00000377348 STARD9Q9P2P6 4700 aa9.77□□□□□ -0.85
VPS28-202ENST00000377348 A0A0J9YX75 114 aa9.76□□□□□ -0.85
VPS28-202ENST00000377348 A0A1B0GVG6 124 aa9.76□□□□□ -0.85
VPS28-202ENST00000377348 ZNF705DP0CH99 300 aaPredicted RBP9.76□□□□□ -0.85
VPS28-202ENST00000377348 ZNF705BP0CI00 300 aaPredicted RBP9.76□□□□□ -0.85
VPS28-202ENST00000377348 PYYP10082 97 aa9.76□□□□□ -0.85
VPS28-202ENST00000377348 SPP1P10451 314 aa9.76□□□□□ -0.85
VPS28-202ENST00000377348 FXYD7P58549 80 aa9.76□□□□□ -0.85
VPS28-202ENST00000377348 FFAR4Q5NUL3 377 aa9.76□□□□□ -0.85
VPS28-202ENST00000377348 MORN3Q6PF18 240 aaPredicted RBP9.76□□□□□ -0.85
VPS28-202ENST00000377348 SLC25A2Q9BXI2 301 aa9.76□□□□□ -0.85
VPS28-202ENST00000377348 PARD6GQ9BYG4 376 aaPredicted RBP9.76□□□□□ -0.85
VPS28-202ENST00000377348 KCNIP2Q9NS61 270 aa9.76□□□□□ -0.85
VPS28-202ENST00000377348 TNFSF18Q9UNG2 199 aa9.76□□□□□ -0.85
VPS28-202ENST00000377348 EIF3GO75821 320 aaKnown RBP eCLIP9.75□□□□□ -0.85
VPS28-202ENST00000377348 EBLN2Q6P2I7 272 aa9.75□□□□□ -0.85
VPS28-202ENST00000377348 LCN15Q6UWW0 184 aa9.75□□□□□ -0.85
VPS28-202ENST00000377348 HSD17B11Q8NBQ5 300 aa9.75□□□□□ -0.85
VPS28-202ENST00000377348 INO80EQ8NBZ0 244 aaPredicted RBP9.75□□□□□ -0.85
VPS28-202ENST00000377348 ZNF738Q8NE65 137 aa9.75□□□□□ -0.85
VPS28-202ENST00000377348 FAM167A-AS1Q96KT0 104 aa9.75□□□□□ -0.85
VPS28-202ENST00000377348 HRH4Q9H3N8 390 aa9.75□□□□□ -0.85
VPS28-202ENST00000377348 ZNF331Q9NQX6 463 aaPredicted RBP9.75□□□□□ -0.85
VPS28-202ENST00000377348 ZNF586Q9NXT0 402 aa9.75□□□□□ -0.85
VPS28-202ENST00000377348 CSMD3Q7Z407 3707 aa9.74□□□□□ -0.85
VPS28-202ENST00000377348 A0A0J9YWU9 116 aa9.74□□□□□ -0.85
VPS28-202ENST00000377348 ZNF705FA8MVS1 300 aaPredicted RBP9.74□□□□□ -0.85
VPS28-202ENST00000377348 CXCL2P19875 107 aa9.74□□□□□ -0.85
VPS28-202ENST00000377348 PSG3Q16557 428 aa9.74□□□□□ -0.85
VPS28-202ENST00000377348 OR11H2Q8NH07 326 aa9.74□□□□□ -0.85
VPS28-202ENST00000377348 SAT2Q96F10 170 aaPredicted RBP9.74□□□□□ -0.85
VPS28-202ENST00000377348 RARRES2Q99969 163 aa9.74□□□□□ -0.85
VPS28-202ENST00000377348 TMEM14CQ9P0S9 112 aa9.74□□□□□ -0.85
VPS28-202ENST00000377348 XCL2Q9UBD3 114 aa9.74□□□□□ -0.85
VPS28-202ENST00000377348 FUT9Q9Y231 359 aa9.74□□□□□ -0.85
VPS28-202ENST00000377348 ARPC5O15511 151 aa9.73□□□□□ -0.85
VPS28-202ENST00000377348 CNN1P51911 297 aaKnown RBP9.73□□□□□ -0.85
VPS28-202ENST00000377348 ZNF266Q14584 549 aa9.73□□□□□ -0.85
VPS28-202ENST00000377348 CSNK1G2-AS1Q8NCQ2 148 aa9.73□□□□□ -0.85
VPS28-202ENST00000377348 MUC7Q8TAX7 377 aa9.73□□□□□ -0.85
VPS28-202ENST00000377348 BLNKQ8WV28 456 aa9.73□□□□□ -0.85
VPS28-202ENST00000377348 SLC50A1Q9BRV3 221 aa9.73□□□□□ -0.85
VPS28-202ENST00000377348 MRPL32Q9BYC8 188 aaKnown RBP9.73□□□□□ -0.85
VPS28-202ENST00000377348 SLC35B3Q9H1N7 401 aa9.73□□□□□ -0.85
VPS28-202ENST00000377348 KMT2CQ8NEZ4 4911 aaKnown RBP9.72□□□□□ -0.85
VPS28-202ENST00000377348 TRBV19A0A075B6N1 114 aa9.72□□□□□ -0.85
VPS28-202ENST00000377348 OR10J4P0C629 311 aa9.72□□□□□ -0.85
VPS28-202ENST00000377348 HIST1H1EP10412 219 aaKnown RBP9.72□□□□□ -0.85
VPS28-202ENST00000377348 ATP6V0CP27449 155 aa9.72□□□□□ -0.85
VPS28-202ENST00000377348 RAB2AP61019 212 aa9.72□□□□□ -0.85
VPS28-202ENST00000377348 NUTF2P61970 127 aaKnown RBP9.72□□□□□ -0.85
VPS28-202ENST00000377348 PSG9Q00887 426 aa9.72□□□□□ -0.85
VPS28-202ENST00000377348 HIST1H1AQ02539 215 aaPredicted RBP9.72□□□□□ -0.85
VPS28-202ENST00000377348 RPL7L1Q6DKI1 246 aaKnown RBP9.72□□□□□ -0.85
VPS28-202ENST00000377348 OR11H4Q8NGC9 324 aa9.72□□□□□ -0.85
VPS28-202ENST00000377348 RPUSD4Q96CM3 377 aaKnown RBP9.72□□□□□ -0.85
VPS28-202ENST00000377348 MFFQ9GZY8 342 aa9.72□□□□□ -0.85
VPS28-202ENST00000377348 SH3BGRL3Q9H299 93 aa9.72□□□□□ -0.85
VPS28-202ENST00000377348 OR51M1Q9H341 326 aa9.72□□□□□ -0.85
VPS28-202ENST00000377348 TIMM9Q9Y5J7 89 aa9.72□□□□□ -0.85
VPS28-202ENST00000377348 PRAC2D3DTV9 90 aa9.71□□□□□ -0.86
VPS28-202ENST00000377348 DEFB4AO15263 64 aa9.71□□□□□ -0.86
VPS28-202ENST00000377348 NDUFB4O95168 129 aa9.71□□□□□ -0.86
VPS28-202ENST00000377348 GUK1Q16774 197 aa9.71□□□□□ -0.86
VPS28-202ENST00000377348 TMEM41BQ5BJD5 291 aa9.71□□□□□ -0.86
VPS28-202ENST00000377348 ZFAND6Q6FIF0 208 aa9.71□□□□□ -0.86
VPS28-202ENST00000377348 AMTNQ6UX39 209 aa9.71□□□□□ -0.86
VPS28-202ENST00000377348 OR8A1Q8NGG7 326 aa9.71□□□□□ -0.86
VPS28-202ENST00000377348 ZNF503Q96F45 646 aa9.71□□□□□ -0.86
VPS28-202ENST00000377348 CLUHP3Q96NS8 147 aa9.71□□□□□ -0.86
VPS28-202ENST00000377348 PAXXQ9BUH6 204 aa9.71□□□□□ -0.86
VPS28-202ENST00000377348 A8MTW9 85 aa9.7□□□□□ -0.86
VPS28-202ENST00000377348 OR7C2O60412 319 aa9.7□□□□□ -0.86
VPS28-202ENST00000377348 DUSP14O95147 198 aaKnown RBP9.7□□□□□ -0.86
VPS28-202ENST00000377348 M6PRP20645 277 aa9.7□□□□□ -0.86
VPS28-202ENST00000377348 RHOBP62745 196 aa9.7□□□□□ -0.86
VPS28-202ENST00000377348 ACOT6Q3I5F7 207 aaPredicted RBP9.7□□□□□ -0.86
VPS28-202ENST00000377348 FAM122CQ6P4D5 195 aa9.7□□□□□ -0.86
VPS28-202ENST00000377348 FXYD5Q96DB9 178 aa9.7□□□□□ -0.86
VPS28-202ENST00000377348 C1QTNF4Q9BXJ3 329 aa9.7□□□□□ -0.86
VPS28-202ENST00000377348 X6R8D5 127 aa9.7□□□□□ -0.86
VPS28-202ENST00000377348 ZNF705EA8MWA4 302 aaPredicted RBP9.69□□□□□ -0.86
VPS28-202ENST00000377348 C3orf84H3BNL1 204 aa9.69□□□□□ -0.86
VPS28-202ENST00000377348 M0R2Z0 102 aa9.69□□□□□ -0.86
VPS28-202ENST00000377348 M0R3E3 92 aa9.69□□□□□ -0.86
VPS28-202ENST00000377348 HMGB3O15347 200 aaKnown RBP9.69□□□□□ -0.86
VPS28-202ENST00000377348 ZNF253O75346 499 aa9.69□□□□□ -0.86
VPS28-202ENST00000377348 NBEAP1P0C6P0 100 aa9.69□□□□□ -0.86
VPS28-202ENST00000377348 SPINK13Q1W4C9 94 aa9.69□□□□□ -0.86
VPS28-202ENST00000377348 EXOC3-AS1Q8N2X6 119 aa9.69□□□□□ -0.86
VPS28-202ENST00000377348 OR10G4Q8NGN3 311 aa9.69□□□□□ -0.86
VPS28-202ENST00000377348 OR10G9Q8NGN4 311 aa9.69□□□□□ -0.86
VPS28-202ENST00000377348 OR10G7Q8NGN6 311 aa9.69□□□□□ -0.86
VPS28-202ENST00000377348 RNF141Q8WVD5 230 aa9.69□□□□□ -0.86
VPS28-202ENST00000377348 PHYHIPLQ96FC7 376 aa9.69□□□□□ -0.86
VPS28-202ENST00000377348 PSMG3Q9BT73 122 aaPredicted RBP9.69□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms