RNA–Protein interactions for RNA: ENST00000341753.10

TRIM28-202, Transcript of tripartite motif containing 28, humanhuman

TSL 1 (best) BASIC

Gene TRIM28, Length 2,709 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-202ENST00000341753 RIGQ13278 110 aa17.72■□□□□ 0.43
TRIM28-202ENST00000341753 JMJD8Q96S16 334 aa17.72■□□□□ 0.43
TRIM28-202ENST00000341753 MEGF9Q9H1U4 602 aa17.72■□□□□ 0.43
TRIM28-202ENST00000341753 RABAC1Q9UI14 185 aa17.72■□□□□ 0.43
TRIM28-202ENST00000341753 CSMD1Q96PZ7 3565 aa17.72■□□□□ 0.43
TRIM28-202ENST00000341753 A0A096LNJ9 63 aa17.72■□□□□ 0.43
TRIM28-202ENST00000341753 NDUFB3O43676 98 aa17.72■□□□□ 0.43
TRIM28-202ENST00000341753 CSN1S1P47710 185 aa17.72■□□□□ 0.43
TRIM28-202ENST00000341753 CRIP1P50238 77 aa17.72■□□□□ 0.43
TRIM28-202ENST00000341753 NHLH1Q02575 133 aa17.72■□□□□ 0.43
TRIM28-202ENST00000341753 FAM71F2Q6NXP2 309 aa17.72■□□□□ 0.43
TRIM28-202ENST00000341753 Q8NA96 180 aa17.71■□□□□ 0.43
TRIM28-202ENST00000341753 C17orf100A8MU93 164 aa17.71■□□□□ 0.43
TRIM28-202ENST00000341753 M0R3E3 92 aa17.71■□□□□ 0.43
TRIM28-202ENST00000341753 TMEM213A2RRL7 107 aa17.71■□□□□ 0.42
TRIM28-202ENST00000341753 D6R8Y8 96 aa17.71■□□□□ 0.42
TRIM28-202ENST00000341753 THBDP07204 575 aa17.71■□□□□ 0.42
TRIM28-202ENST00000341753 FGF6P10767 208 aa17.71■□□□□ 0.42
TRIM28-202ENST00000341753 ADIPOQQ15848 244 aa17.71■□□□□ 0.42
TRIM28-202ENST00000341753 C16orf54Q6UWD8 224 aa17.71■□□□□ 0.42
TRIM28-202ENST00000341753 C8orf49Q96NF6 230 aa17.71■□□□□ 0.42
TRIM28-202ENST00000341753 TMEM133Q9H2Q1 129 aa17.71■□□□□ 0.42
TRIM28-202ENST00000341753 C16orf97H3BN30 126 aa17.7■□□□□ 0.42
TRIM28-202ENST00000341753 PRRG2O14669 202 aa17.7■□□□□ 0.42
TRIM28-202ENST00000341753 WFDC3Q8IUB2 231 aa17.7■□□□□ 0.42
TRIM28-202ENST00000341753 RAB37Q96AX2 223 aa17.7■□□□□ 0.42
TRIM28-202ENST00000341753 S4R3C0 116 aa17.7■□□□□ 0.42
TRIM28-202ENST00000341753 H3BUT2 72 aa17.7■□□□□ 0.42
TRIM28-202ENST00000341753 LOXP28300 417 aaPredicted RBP17.7■□□□□ 0.42
TRIM28-202ENST00000341753 PRSS57Q6UWY2 283 aa17.7■□□□□ 0.42
TRIM28-202ENST00000341753 TMEM108Q6UXF1 575 aa17.7■□□□□ 0.42
TRIM28-202ENST00000341753 THYN1Q9P016 225 aa17.7■□□□□ 0.42
TRIM28-202ENST00000341753 MC5RP33032 325 aa17.69■□□□□ 0.42
TRIM28-202ENST00000341753 CACNG7P62955 275 aa17.69■□□□□ 0.42
TRIM28-202ENST00000341753 GFRALQ6UXV0 394 aa17.69■□□□□ 0.42
TRIM28-202ENST00000341753 RASL11BQ9BPW5 248 aa17.69■□□□□ 0.42
TRIM28-202ENST00000341753 FBXL15Q9H469 300 aa17.69■□□□□ 0.42
TRIM28-202ENST00000341753 PSG8Q9UQ74 426 aa17.69■□□□□ 0.42
TRIM28-202ENST00000341753 DCHS2Q6V1P9 2916 aa17.69■□□□□ 0.42
TRIM28-202ENST00000341753 TMEM178BH3BS89 294 aa17.69■□□□□ 0.42
TRIM28-202ENST00000341753 K7ERU9 68 aa17.69■□□□□ 0.42
TRIM28-202ENST00000341753 LGALS7P47929 136 aa17.69■□□□□ 0.42
TRIM28-202ENST00000341753 PLP1P60201 277 aa17.69■□□□□ 0.42
TRIM28-202ENST00000341753 AMN1Q8IY45 258 aa17.69■□□□□ 0.42
TRIM28-202ENST00000341753 SIGLEC8Q9NYZ4 499 aa17.69■□□□□ 0.42
TRIM28-202ENST00000341753 SIGLEC9Q9Y336 463 aa17.69■□□□□ 0.42
TRIM28-202ENST00000341753 F11RQ9Y624 299 aaKnown RBP17.69■□□□□ 0.42
TRIM28-202ENST00000341753 MALRD1Q5VYJ5 2156 aa17.68■□□□□ 0.42
TRIM28-202ENST00000341753 FOXC1Q12948 553 aa17.68■□□□□ 0.42
TRIM28-202ENST00000341753 IGHV1-8P0DP01 117 aa17.68■□□□□ 0.42
TRIM28-202ENST00000341753 LINC00311Q8N616 119 aa17.68■□□□□ 0.42
TRIM28-202ENST00000341753 AP1S3Q96PC3 154 aa17.68■□□□□ 0.42
TRIM28-202ENST00000341753 CSTL1Q9H114 145 aa17.68■□□□□ 0.42
TRIM28-202ENST00000341753 TEX22C9J3V5 150 aa17.67■□□□□ 0.42
TRIM28-202ENST00000341753 NGBQ9NPG2 151 aa17.67■□□□□ 0.42
TRIM28-202ENST00000341753 PTPRQQ9UMZ3 2332 aa17.67■□□□□ 0.42
TRIM28-202ENST00000341753 TRBV19A0A075B6N1 114 aa17.67■□□□□ 0.42
TRIM28-202ENST00000341753 HOXB4P17483 251 aaPredicted RBP17.67■□□□□ 0.42
TRIM28-202ENST00000341753 PVRIGQ6DKI7 326 aa17.67■□□□□ 0.42
TRIM28-202ENST00000341753 SMKR1H3BMG3 65 aa17.66■□□□□ 0.42
TRIM28-202ENST00000341753 C3orf36Q3SXR2 165 aa17.66■□□□□ 0.42
TRIM28-202ENST00000341753 TM4SF20Q53R12 229 aa17.66■□□□□ 0.42
TRIM28-202ENST00000341753 BCL6BQ8N143 479 aaPredicted RBP17.66■□□□□ 0.42
TRIM28-202ENST00000341753 IGKV1-17P01599 117 aa17.66■□□□□ 0.42
TRIM28-202ENST00000341753 IGF2RP11717 2491 aa17.66■□□□□ 0.42
TRIM28-202ENST00000341753 DLX6P56179 175 aa17.66■□□□□ 0.42
TRIM28-202ENST00000341753 SEC11AP67812 179 aa17.66■□□□□ 0.42
TRIM28-202ENST00000341753 LYZL1Q6UWQ5 148 aa17.66■□□□□ 0.42
TRIM28-202ENST00000341753 ASCL5Q7RTU5 278 aa17.66■□□□□ 0.42
TRIM28-202ENST00000341753 IGFBPL1Q8WX77 278 aa17.65■□□□□ 0.42
TRIM28-202ENST00000341753 TMEM14CQ9P0S9 112 aa17.65■□□□□ 0.42
TRIM28-202ENST00000341753 KIR3DS1Q14943 382 aa17.65■□□□□ 0.42
TRIM28-202ENST00000341753 SIGLEC15Q6ZMC9 328 aa17.65■□□□□ 0.42
TRIM28-202ENST00000341753 PPP1R27Q86WC6 154 aa17.65■□□□□ 0.42
TRIM28-202ENST00000341753 FER1L6-AS1Q8NA97 138 aa17.65■□□□□ 0.42
TRIM28-202ENST00000341753 PRELID3AQ96N28 172 aa17.64■□□□□ 0.42
TRIM28-202ENST00000341753 NMUP48645 174 aa17.64■□□□□ 0.41
TRIM28-202ENST00000341753 PSG3Q16557 428 aa17.64■□□□□ 0.41
TRIM28-202ENST00000341753 PCP2Q8IVA1 136 aa17.64■□□□□ 0.41
TRIM28-202ENST00000341753 NUP37Q8NFH4 326 aa17.64■□□□□ 0.41
TRIM28-202ENST00000341753 I3L2K1 104 aa17.63■□□□□ 0.41
TRIM28-202ENST00000341753 CRYGBP07316 175 aa17.63■□□□□ 0.41
TRIM28-202ENST00000341753 TMEM155Q4W5P6 130 aa17.63■□□□□ 0.41
TRIM28-202ENST00000341753 UFSP1Q6NVU6 142 aa17.63■□□□□ 0.41
TRIM28-202ENST00000341753 TMEM75Q8N9X5 138 aa17.63■□□□□ 0.41
TRIM28-202ENST00000341753 INSIG2Q9Y5U4 225 aa17.63■□□□□ 0.41
TRIM28-202ENST00000341753 C9orf118A6NHY6 69 aa17.63■□□□□ 0.41
TRIM28-202ENST00000341753 APOBEC3AP31941 199 aaPredicted RBP17.63■□□□□ 0.41
TRIM28-202ENST00000341753 PLGLAQ15195 96 aa17.63■□□□□ 0.41
TRIM28-202ENST00000341753 COX7A1P24310 79 aa17.63■□□□□ 0.41
TRIM28-202ENST00000341753 ATRXP46100 2492 aa17.62■□□□□ 0.41
TRIM28-202ENST00000341753 ABCA4P78363 2273 aa17.62■□□□□ 0.41
TRIM28-202ENST00000341753 SCNM1Q9BWG6 230 aa17.62■□□□□ 0.41
TRIM28-202ENST00000341753 FCGR2BP31994 310 aaPredicted RBP17.62■□□□□ 0.41
TRIM28-202ENST00000341753 NBL1P41271 181 aa17.62■□□□□ 0.41
TRIM28-202ENST00000341753 SHANK2-AS3Q9BTD1 123 aa17.62■□□□□ 0.41
TRIM28-202ENST00000341753 IL4P05112 153 aa17.61■□□□□ 0.41
TRIM28-202ENST00000341753 KLF17Q5JT82 389 aaPredicted RBP17.61■□□□□ 0.41
TRIM28-202ENST00000341753 BOD1L2Q8IYS8 172 aa17.61■□□□□ 0.41
TRIM28-202ENST00000341753 IGHV1-3A0A0C4DH29 117 aa17.61■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 107.9 ms