RNA–Protein interactions for RNA: ENST00000326004.4

HMGB1-201, Transcript of high mobility group box 1, humanhuman

TSL 3 BASIC

Gene HMGB1, Length 821 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-201ENST00000326004 OR52E6Q96RD3 313 aa1.62□□□□□ -2.15
HMGB1-201ENST00000326004 TRIB3Q96RU7 358 aa1.62□□□□□ -2.15
HMGB1-201ENST00000326004 PECRQ9BY49 303 aa1.62□□□□□ -2.15
HMGB1-201ENST00000326004 OR2D2Q9H210 308 aa1.62□□□□□ -2.15
HMGB1-201ENST00000326004 CST9LQ9H4G1 147 aa1.62□□□□□ -2.15
HMGB1-201ENST00000326004 TPT1P8Q9HAU6 139 aa1.62□□□□□ -2.15
HMGB1-201ENST00000326004 LRTM1Q9HBL6 345 aa1.62□□□□□ -2.15
HMGB1-201ENST00000326004 HES4Q9HCC6 221 aa1.62□□□□□ -2.15
HMGB1-201ENST00000326004 KCNIP2Q9NS61 270 aa1.62□□□□□ -2.15
HMGB1-201ENST00000326004 VPS29Q9UBQ0 182 aa1.62□□□□□ -2.15
HMGB1-201ENST00000326004 ZNF391Q9UJN7 358 aa1.62□□□□□ -2.15
HMGB1-201ENST00000326004 TNFSF18Q9UNG2 199 aa1.62□□□□□ -2.15
HMGB1-201ENST00000326004 CARHSP1Q9Y2V2 147 aaKnown RBP1.62□□□□□ -2.15
HMGB1-201ENST00000326004 MRPS16Q9Y3D3 137 aaKnown RBP1.62□□□□□ -2.15
HMGB1-201ENST00000326004 LSM5Q9Y4Y9 91 aaKnown RBP1.62□□□□□ -2.15
HMGB1-201ENST00000326004 PHLDA3Q9Y5J5 127 aa1.62□□□□□ -2.15
HMGB1-201ENST00000326004 PCYT1BQ9Y5K3 369 aaPredicted RBP1.62□□□□□ -2.15
HMGB1-201ENST00000326004 OR51B4Q9Y5P0 310 aa1.62□□□□□ -2.15
HMGB1-201ENST00000326004 V9GYH0 126 aa1.62□□□□□ -2.15
HMGB1-201ENST00000326004 V9GYS6 101 aa1.62□□□□□ -2.15
HMGB1-201ENST00000326004 CUBNO60494 3623 aa1.61□□□□□ -2.15
HMGB1-201ENST00000326004 UBR4Q5T4S7 5183 aa1.61□□□□□ -2.15
HMGB1-201ENST00000326004 DOCK5Q9H7D0 1870 aa1.61□□□□□ -2.15
HMGB1-201ENST00000326004 TCRBV3S1A0A5B6 114 aa1.61□□□□□ -2.15
HMGB1-201ENST00000326004 SMIM9A6NGZ8 99 aa1.61□□□□□ -2.15
HMGB1-201ENST00000326004 K7ERU9 68 aa1.61□□□□□ -2.15
HMGB1-201ENST00000326004 STK16O75716 305 aa1.61□□□□□ -2.15
HMGB1-201ENST00000326004 IGLV3-27P01718 113 aa1.61□□□□□ -2.15
HMGB1-201ENST00000326004 IGLV6-57P01721 117 aa1.61□□□□□ -2.15
HMGB1-201ENST00000326004 BPGMP07738 259 aa1.61□□□□□ -2.15
HMGB1-201ENST00000326004 UCHL1P09936 223 aa1.61□□□□□ -2.15
HMGB1-201ENST00000326004 P0C880 135 aa1.61□□□□□ -2.15
HMGB1-201ENST00000326004 SULT1A3P0DMM9 295 aa1.61□□□□□ -2.15
HMGB1-201ENST00000326004 SULT1A4P0DMN0 295 aa1.61□□□□□ -2.15
HMGB1-201ENST00000326004 GZMBP10144 247 aa1.61□□□□□ -2.15
HMGB1-201ENST00000326004 ADCYAP1P18509 176 aa1.61□□□□□ -2.15
HMGB1-201ENST00000326004 ALOX5APP20292 161 aa1.61□□□□□ -2.15
HMGB1-201ENST00000326004 KDELR1P24390 212 aa1.61□□□□□ -2.15
HMGB1-201ENST00000326004 S100GP29377 79 aa1.61□□□□□ -2.15
HMGB1-201ENST00000326004 MAGEA12P43365 314 aa1.61□□□□□ -2.15
HMGB1-201ENST00000326004 OR1E2P47887 323 aa1.61□□□□□ -2.15
HMGB1-201ENST00000326004 DAPP51397 102 aa1.61□□□□□ -2.15
HMGB1-201ENST00000326004 RPS20P60866 119 aaKnown RBP1.61□□□□□ -2.15
HMGB1-201ENST00000326004 S100A10P60903 97 aa1.61□□□□□ -2.15
HMGB1-201ENST00000326004 BTN3A2P78410 334 aa1.61□□□□□ -2.15
HMGB1-201ENST00000326004 BSPH1Q075Z2 132 aa1.61□□□□□ -2.15
HMGB1-201ENST00000326004 PRDX4Q13162 271 aa1.61□□□□□ -2.15
HMGB1-201ENST00000326004 PLPPR5Q32ZL2 321 aa1.61□□□□□ -2.15
HMGB1-201ENST00000326004 C10orf91Q5T1B1 145 aa1.61□□□□□ -2.15
HMGB1-201ENST00000326004 C1orf194Q5T5A4 169 aa1.61□□□□□ -2.15
HMGB1-201ENST00000326004 BCL2L15Q5TBC7 163 aa1.61□□□□□ -2.15
HMGB1-201ENST00000326004 HIST2H3PS2Q5TEC6 136 aa1.61□□□□□ -2.15
HMGB1-201ENST00000326004 FAM78BQ5VT40 261 aa1.61□□□□□ -2.15
HMGB1-201ENST00000326004 TMEM244Q5VVB8 128 aa1.61□□□□□ -2.15
HMGB1-201ENST00000326004 ZNF660Q6AZW8 331 aaPredicted RBP1.61□□□□□ -2.15
HMGB1-201ENST00000326004 TMPPEQ6ZT21 453 aa1.61□□□□□ -2.15
HMGB1-201ENST00000326004 ZNF550Q7Z398 422 aa1.61□□□□□ -2.15
HMGB1-201ENST00000326004 LINC00471Q8N535 108 aa1.61□□□□□ -2.15
HMGB1-201ENST00000326004 SMIM20Q8N5G0 67 aa1.61□□□□□ -2.15
HMGB1-201ENST00000326004 ACBD7Q8N6N7 88 aa1.61□□□□□ -2.15
HMGB1-201ENST00000326004 OR4E2Q8NGC2 313 aa1.61□□□□□ -2.15
HMGB1-201ENST00000326004 OR13C8Q8NGS7 320 aa1.61□□□□□ -2.15
HMGB1-201ENST00000326004 OR2T35Q8NGX2 323 aa1.61□□□□□ -2.15
HMGB1-201ENST00000326004 OR10X1Q8NGY0 326 aa1.61□□□□□ -2.15
HMGB1-201ENST00000326004 OR10A6Q8NH74 314 aa1.61□□□□□ -2.15
HMGB1-201ENST00000326004 SGMS2Q8NHU3 365 aa1.61□□□□□ -2.15
HMGB1-201ENST00000326004 JOSD2Q8TAC2 188 aa1.61□□□□□ -2.15
HMGB1-201ENST00000326004 CANT1Q8WVQ1 401 aa1.61□□□□□ -2.15
HMGB1-201ENST00000326004 TLNRD1Q9H1K6 362 aa1.61□□□□□ -2.15
HMGB1-201ENST00000326004 OR51I2Q9H344 312 aa1.61□□□□□ -2.15
HMGB1-201ENST00000326004 CALML5Q9NZT1 146 aa1.61□□□□□ -2.15
HMGB1-201ENST00000326004 DOK5Q9P104 306 aa1.61□□□□□ -2.15
HMGB1-201ENST00000326004 TPRKBQ9Y3C4 175 aa1.61□□□□□ -2.15
HMGB1-201ENST00000326004 ICOSQ9Y6W8 199 aa1.61□□□□□ -2.15
HMGB1-201ENST00000326004 PDCD11Q14690 1871 aaKnown RBP1.6□□□□□ -2.15
HMGB1-201ENST00000326004 F5P12259 2224 aa1.6□□□□□ -2.15
HMGB1-201ENST00000326004 MGAM2Q2M2H8 2515 aa1.6□□□□□ -2.15
HMGB1-201ENST00000326004 A0A087WUJ7 227 aa1.6□□□□□ -2.15
HMGB1-201ENST00000326004 TMED7-TICAM2A0A0A6YYA0 188 aa1.6□□□□□ -2.15
HMGB1-201ENST00000326004 A0A0D9SG52 128 aa1.6□□□□□ -2.15
HMGB1-201ENST00000326004 TMEM269A0A1B0GVZ9 245 aa1.6□□□□□ -2.15
HMGB1-201ENST00000326004 DHRS12A0PJE2 317 aa1.6□□□□□ -2.15
HMGB1-201ENST00000326004 TRAPPC13A5PLN9 417 aa1.6□□□□□ -2.15
HMGB1-201ENST00000326004 A6NED7 52 aa1.6□□□□□ -2.15
HMGB1-201ENST00000326004 OR11H12B2RN74 326 aa1.6□□□□□ -2.15
HMGB1-201ENST00000326004 MCRIP1C9JLW8 97 aa1.6□□□□□ -2.15
HMGB1-201ENST00000326004 G3V3Q6 166 aa1.6□□□□□ -2.15
HMGB1-201ENST00000326004 H3BMM0 161 aa1.6□□□□□ -2.15
HMGB1-201ENST00000326004 TRAPPC2LH3BP13 241 aa1.6□□□□□ -2.15
HMGB1-201ENST00000326004 M0R381 172 aa1.6□□□□□ -2.15
HMGB1-201ENST00000326004 LYRM1O43325 122 aa1.6□□□□□ -2.15
HMGB1-201ENST00000326004 IGHG2P01859 326 aa1.6□□□□□ -2.15
HMGB1-201ENST00000326004 OPN1SWP03999 348 aa1.6□□□□□ -2.15
HMGB1-201ENST00000326004 APODP05090 189 aa1.6□□□□□ -2.15
HMGB1-201ENST00000326004 SERPINE1P05121 402 aa1.6□□□□□ -2.15
HMGB1-201ENST00000326004 CST2P09228 141 aa1.6□□□□□ -2.15
HMGB1-201ENST00000326004 OR5G3P0C626 314 aa1.6□□□□□ -2.15
HMGB1-201ENST00000326004 CTLA4P16410 223 aa1.6□□□□□ -2.15
HMGB1-201ENST00000326004 CCL1P22362 96 aa1.6□□□□□ -2.15
HMGB1-201ENST00000326004 NFYAP23511 347 aaPredicted RBP1.6□□□□□ -2.15
Retrieved 100 of 20,778 RNA–protein pairs in 64.9 ms