RNA–Protein interactions for RNA: ENST00000252444.9

LDLR-201, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene LDLR, Length 5,337 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-201ENST00000252444 NUDT11Q96G61 164 aa10.8□□□□□ -0.68
LDLR-201ENST00000252444 RCHY1Q96PM5 261 aa10.8□□□□□ -0.68
LDLR-201ENST00000252444 EML5Q05BV3 1969 aa10.8□□□□□ -0.68
LDLR-201ENST00000252444 IL17RELQ6ZVW7 336 aa10.8□□□□□ -0.68
LDLR-201ENST00000252444 GPHB5Q86YW7 130 aa10.8□□□□□ -0.68
LDLR-201ENST00000252444 GEMIN7Q9H840 131 aaKnown RBP10.8□□□□□ -0.68
LDLR-201ENST00000252444 JOSD1Q15040 202 aaPredicted RBP10.79□□□□□ -0.68
LDLR-201ENST00000252444 CLPSL1A2RUU4 121 aa10.79□□□□□ -0.68
LDLR-201ENST00000252444 MSMPQ1L6U9 139 aa10.79□□□□□ -0.68
LDLR-201ENST00000252444 SPRNQ5BIV9 151 aa10.79□□□□□ -0.68
LDLR-201ENST00000252444 LINC00527Q9UJ94 153 aa10.79□□□□□ -0.68
LDLR-201ENST00000252444 SRRM4A7MD48 611 aaKnown RBP10.79□□□□□ -0.68
LDLR-201ENST00000252444 I3L2K1 104 aa10.79□□□□□ -0.68
LDLR-201ENST00000252444 SCGB1D4Q6XE38 83 aa10.79□□□□□ -0.68
LDLR-201ENST00000252444 ODF3L1Q8IXM7 274 aa10.79□□□□□ -0.68
LDLR-201ENST00000252444 ZNF407Q9C0G0 2248 aa10.79□□□□□ -0.68
LDLR-201ENST00000252444 TRBV6-1A0A0K0K1D8 114 aa10.79□□□□□ -0.68
LDLR-201ENST00000252444 SH2D1AO60880 128 aa10.79□□□□□ -0.68
LDLR-201ENST00000252444 C20orf144Q9BQM9 153 aa10.79□□□□□ -0.68
LDLR-201ENST00000252444 PHOX2AO14813 284 aa10.78□□□□□ -0.68
LDLR-201ENST00000252444 IGHV4-59P01825 116 aa10.78□□□□□ -0.68
LDLR-201ENST00000252444 IGHV4-31P0DP07 118 aa10.78□□□□□ -0.68
LDLR-201ENST00000252444 GCSAMLQ5JQS6 135 aa10.78□□□□□ -0.68
LDLR-201ENST00000252444 KLF17Q5JT82 389 aaPredicted RBP10.78□□□□□ -0.68
LDLR-201ENST00000252444 IFITM10A6NMD0 228 aa10.78□□□□□ -0.68
LDLR-201ENST00000252444 PFN1P07737 140 aaKnown RBP10.78□□□□□ -0.68
LDLR-201ENST00000252444 RPL36AP83881 106 aaKnown RBP10.78□□□□□ -0.68
LDLR-201ENST00000252444 FAM74A4Q5TZK3 123 aa10.78□□□□□ -0.68
LDLR-201ENST00000252444 OR11H1Q8NG94 326 aa10.78□□□□□ -0.68
LDLR-201ENST00000252444 RPL36ALQ969Q0 106 aaKnown RBP10.78□□□□□ -0.68
LDLR-201ENST00000252444 C7orf71A4D174 169 aa10.78□□□□□ -0.68
LDLR-201ENST00000252444 LGALS3P17931 250 aaKnown RBP10.78□□□□□ -0.68
LDLR-201ENST00000252444 CYSLTR1Q9Y271 337 aa10.78□□□□□ -0.68
LDLR-201ENST00000252444 TRGV4A0A0C4DH28 118 aa10.77□□□□□ -0.68
LDLR-201ENST00000252444 A8MWV9 139 aa10.77□□□□□ -0.68
LDLR-201ENST00000252444 Q6YL49 198 aa10.77□□□□□ -0.68
LDLR-201ENST00000252444 TRAV2A0A0B4J234 112 aa10.77□□□□□ -0.68
LDLR-201ENST00000252444 NDUFS7O75251 213 aa10.77□□□□□ -0.68
LDLR-201ENST00000252444 IGKV3-20P01619 116 aa10.77□□□□□ -0.68
LDLR-201ENST00000252444 IFI27P40305 119 aaPredicted RBP10.77□□□□□ -0.68
LDLR-201ENST00000252444 C8orf86Q6ZUL3 223 aa10.77□□□□□ -0.68
LDLR-201ENST00000252444 TMEM158Q8WZ71 300 aa10.77□□□□□ -0.68
LDLR-201ENST00000252444 CBY1Q9Y3M2 126 aa10.77□□□□□ -0.68
LDLR-201ENST00000252444 TRBV7-9A0A0J9YWB2 115 aa10.77□□□□□ -0.69
LDLR-201ENST00000252444 LOC389332A0A1B0GUA5 103 aa10.77□□□□□ -0.69
LDLR-201ENST00000252444 Q1RN00 199 aa10.77□□□□□ -0.69
LDLR-201ENST00000252444 TCTEX1D4Q5JR98 221 aa10.77□□□□□ -0.69
LDLR-201ENST00000252444 ZNF491Q8N8L2 437 aa10.77□□□□□ -0.69
LDLR-201ENST00000252444 A0A087X0K7 114 aa10.77□□□□□ -0.69
LDLR-201ENST00000252444 LINC00587B1AMM8 73 aa10.77□□□□□ -0.69
LDLR-201ENST00000252444 IGF1P05019 195 aa10.77□□□□□ -0.69
LDLR-201ENST00000252444 ZFP36P26651 326 aaKnown RBP10.77□□□□□ -0.69
LDLR-201ENST00000252444 C11orf42Q8N5U0 333 aa10.77□□□□□ -0.69
LDLR-201ENST00000252444 G3V318 75 aa10.77□□□□□ -0.69
LDLR-201ENST00000252444 IGHV4-38-2P0DP08 117 aa10.77□□□□□ -0.69
LDLR-201ENST00000252444 COTL1Q14019 142 aa10.77□□□□□ -0.69
LDLR-201ENST00000252444 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP10.76□□□□□ -0.69
LDLR-201ENST00000252444 ADAMTS20P59510 1910 aa10.76□□□□□ -0.69
LDLR-201ENST00000252444 IGKV2-40A0A087WW87 121 aaPredicted RBP10.76□□□□□ -0.69
LDLR-201ENST00000252444 IGKV2D-40P01614 121 aaPredicted RBP10.76□□□□□ -0.69
LDLR-201ENST00000252444 RPL13AP40429 203 aaKnown RBP10.76□□□□□ -0.69
LDLR-201ENST00000252444 MIEN1Q9BRT3 115 aa10.76□□□□□ -0.69
LDLR-201ENST00000252444 ZNF580Q9UK33 172 aa10.76□□□□□ -0.69
LDLR-201ENST00000252444 PRSS46E5RG02 174 aa10.76□□□□□ -0.69
LDLR-201ENST00000252444 C19orf84I3L1E1 186 aa10.76□□□□□ -0.69
LDLR-201ENST00000252444 ZNF688P0C7X2 276 aa10.76□□□□□ -0.69
LDLR-201ENST00000252444 HBDP02042 147 aa10.76□□□□□ -0.69
LDLR-201ENST00000252444 RPLP1P05386 114 aaKnown RBP10.76□□□□□ -0.69
LDLR-201ENST00000252444 P0C879 139 aa10.76□□□□□ -0.69
LDLR-201ENST00000252444 C5orf24Q7Z6I8 188 aa10.76□□□□□ -0.69
LDLR-201ENST00000252444 HSPB9Q9BQS6 159 aa10.76□□□□□ -0.69
LDLR-201ENST00000252444 EML6Q6ZMW3 1958 aa10.75□□□□□ -0.69
LDLR-201ENST00000252444 WI2-2373I1.2A0A1W2PRP0 233 aa10.75□□□□□ -0.69
LDLR-201ENST00000252444 NDUFA11Q86Y39 141 aa10.75□□□□□ -0.69
LDLR-201ENST00000252444 OR4C5Q8NGB2 326 aa10.75□□□□□ -0.69
LDLR-201ENST00000252444 ZNF414Q96IQ9 312 aa10.75□□□□□ -0.69
LDLR-201ENST00000252444 TMEM160Q9NX00 188 aa10.75□□□□□ -0.69
LDLR-201ENST00000252444 SCGB3A1Q96QR1 104 aa10.75□□□□□ -0.69
LDLR-201ENST00000252444 CCL24O00175 119 aa10.75□□□□□ -0.69
LDLR-201ENST00000252444 GHRHP01286 108 aa10.75□□□□□ -0.69
LDLR-201ENST00000252444 TPSG1Q9NRR2 321 aa10.75□□□□□ -0.69
LDLR-201ENST00000252444 VCYO14598 125 aa10.75□□□□□ -0.69
LDLR-201ENST00000252444 CDKN1BP46527 198 aa10.75□□□□□ -0.69
LDLR-201ENST00000252444 EXOC3-AS1Q8N2X6 119 aa10.75□□□□□ -0.69
LDLR-201ENST00000252444 LYPD6BQ8NI32 183 aa10.75□□□□□ -0.69
LDLR-201ENST00000252444 APOHP02749 345 aaPredicted RBP10.74□□□□□ -0.69
LDLR-201ENST00000252444 LGALS9O00182 355 aa10.74□□□□□ -0.69
LDLR-201ENST00000252444 SLC17A3O00476 420 aa10.74□□□□□ -0.69
LDLR-201ENST00000252444 SNRPCP09234 159 aaKnown RBP10.74□□□□□ -0.69
LDLR-201ENST00000252444 ACTL10Q5JWF8 245 aa10.74□□□□□ -0.69
LDLR-201ENST00000252444 LY6LH3BQJ8 138 aa10.74□□□□□ -0.69
LDLR-201ENST00000252444 K7EMI3 77 aa10.74□□□□□ -0.69
LDLR-201ENST00000252444 TRPT1Q86TN4 253 aaKnown RBP10.74□□□□□ -0.69
LDLR-201ENST00000252444 TEX22C9J3V5 150 aa10.74□□□□□ -0.69
LDLR-201ENST00000252444 FCN3O75636 299 aa10.73□□□□□ -0.69
LDLR-201ENST00000252444 CBLN1P23435 193 aa10.73□□□□□ -0.69
LDLR-201ENST00000252444 DIAPH2-AS1Q14236 149 aa10.73□□□□□ -0.69
LDLR-201ENST00000252444 RNASE7Q9H1E1 156 aaKnown RBP10.73□□□□□ -0.69
LDLR-201ENST00000252444 DEFB131AP59861 70 aa10.73□□□□□ -0.69
LDLR-201ENST00000252444 UQCR10Q9UDW1 63 aa10.73□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 105.2 ms