RNA–Protein interactions for RNA: ENST00000216639.7

VRK1-201, Transcript of vaccinia related kinase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VRK1, Length 1,745 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1-201ENST00000216639 DAZAP1Q96EP5 407 aaKnown RBP13.46□□□□□ -0.25
VRK1-201ENST00000216639 NUDT11Q96G61 164 aa13.46□□□□□ -0.25
VRK1-201ENST00000216639 ZNF492Q9P255 531 aa13.46□□□□□ -0.25
VRK1-201ENST00000216639 DIRC3C9JPN6 131 aa13.45□□□□□ -0.26
VRK1-201ENST00000216639 IGLV1-40P01703 118 aa13.45□□□□□ -0.26
VRK1-201ENST00000216639 COX19Q49B96 90 aa13.45□□□□□ -0.26
VRK1-201ENST00000216639 Q6YL49 198 aa13.45□□□□□ -0.26
VRK1-201ENST00000216639 PRNTQ86SH4 94 aa13.45□□□□□ -0.26
VRK1-201ENST00000216639 TEX29Q8N6K0 151 aa13.45□□□□□ -0.26
VRK1-201ENST00000216639 VPREB3Q9UKI3 123 aa13.45□□□□□ -0.26
VRK1-201ENST00000216639 ZFP30Q9Y2G7 519 aa13.45□□□□□ -0.26
VRK1-201ENST00000216639 A0A087X0K7 114 aa13.44□□□□□ -0.26
VRK1-201ENST00000216639 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP13.44□□□□□ -0.26
VRK1-201ENST00000216639 ZNF785A8K8V0 405 aa13.44□□□□□ -0.26
VRK1-201ENST00000216639 S100A8P05109 93 aa13.44□□□□□ -0.26
VRK1-201ENST00000216639 CR1P17927 2039 aa13.44□□□□□ -0.26
VRK1-201ENST00000216639 PSG3Q16557 428 aa13.44□□□□□ -0.26
VRK1-201ENST00000216639 Q6ZS46 218 aa13.44□□□□□ -0.26
VRK1-201ENST00000216639 ANKRD17O75179 2603 aaKnown RBP13.44□□□□□ -0.26
VRK1-201ENST00000216639 TRAV8-1A0A0A6YYK1 113 aa13.44□□□□□ -0.26
VRK1-201ENST00000216639 CLPSL1A2RUU4 121 aa13.44□□□□□ -0.26
VRK1-201ENST00000216639 FBLL1A6NHQ2 334 aaKnown RBP13.44□□□□□ -0.26
VRK1-201ENST00000216639 IGLV2-11P01706 119 aa13.44□□□□□ -0.26
VRK1-201ENST00000216639 CDX1P47902 265 aaPredicted RBP13.44□□□□□ -0.26
VRK1-201ENST00000216639 SMAD5-AS1Q9Y6J3 95 aa13.44□□□□□ -0.26
VRK1-201ENST00000216639 LRRK2Q5S007 2527 aa13.43□□□□□ -0.26
VRK1-201ENST00000216639 NDUFA4O00483 81 aa13.43□□□□□ -0.26
VRK1-201ENST00000216639 P01737 135 aa13.43□□□□□ -0.26
VRK1-201ENST00000216639 MEOX2P50222 304 aa13.43□□□□□ -0.26
VRK1-201ENST00000216639 TCL1AP56279 114 aa13.43□□□□□ -0.26
VRK1-201ENST00000216639 CFHR3Q02985 330 aa13.43□□□□□ -0.26
VRK1-201ENST00000216639 FAM209BQ5JX69 171 aa13.43□□□□□ -0.26
VRK1-201ENST00000216639 WDR73Q6P4I2 378 aa13.43□□□□□ -0.26
VRK1-201ENST00000216639 PSG8Q9UQ74 426 aa13.43□□□□□ -0.26
VRK1-201ENST00000216639 FBN2P35556 2912 aa13.43□□□□□ -0.26
VRK1-201ENST00000216639 UTP20O75691 2785 aaKnown RBP13.43□□□□□ -0.26
VRK1-201ENST00000216639 IZUMO1RA6ND01 250 aa13.42□□□□□ -0.26
VRK1-201ENST00000216639 M0R3E3 92 aa13.42□□□□□ -0.26
VRK1-201ENST00000216639 TSKUQ8WUA8 353 aa13.42□□□□□ -0.26
VRK1-201ENST00000216639 SLC50A1Q9BRV3 221 aa13.42□□□□□ -0.26
VRK1-201ENST00000216639 RPP21Q9H633 154 aaKnown RBP13.42□□□□□ -0.26
VRK1-201ENST00000216639 NAT8BQ9UHF3 227 aa13.42□□□□□ -0.26
VRK1-201ENST00000216639 TMEM89A2RUT3 159 aa13.42□□□□□ -0.26
VRK1-201ENST00000216639 MT-ND6P03923 174 aa13.42□□□□□ -0.26
VRK1-201ENST00000216639 CT83Q5H943 113 aa13.42□□□□□ -0.26
VRK1-201ENST00000216639 CRYBG3Q68DQ2 2970 aa13.42□□□□□ -0.26
VRK1-201ENST00000216639 OR4X2Q8NGF9 303 aa13.42□□□□□ -0.26
VRK1-201ENST00000216639 GNB1LQ9BYB4 327 aa13.42□□□□□ -0.26
VRK1-201ENST00000216639 PRSS22Q9GZN4 317 aa13.42□□□□□ -0.26
VRK1-201ENST00000216639 KLK15Q9H2R5 256 aa13.42□□□□□ -0.26
VRK1-201ENST00000216639 ZNF331Q9NQX6 463 aaPredicted RBP13.42□□□□□ -0.26
VRK1-201ENST00000216639 U3KQE9 123 aa13.42□□□□□ -0.26
VRK1-201ENST00000216639 C19orf71A6NCJ1 209 aa13.41□□□□□ -0.26
VRK1-201ENST00000216639 CA1P00915 261 aaPredicted RBP13.41□□□□□ -0.26
VRK1-201ENST00000216639 LINC00518Q8N0U6 118 aa13.41□□□□□ -0.26
VRK1-201ENST00000216639 GBGT1Q8N5D6 347 aa13.41□□□□□ -0.26
VRK1-201ENST00000216639 NPFFR1Q9GZQ6 430 aa13.41□□□□□ -0.26
VRK1-201ENST00000216639 PRDM13Q9H4Q3 707 aa13.41□□□□□ -0.26
VRK1-201ENST00000216639 XKRY2A2RUG3 117 aa13.4□□□□□ -0.26
VRK1-201ENST00000216639 A8MWL6 223 aa13.4□□□□□ -0.26
VRK1-201ENST00000216639 IGHV3-11P01762 117 aa13.4□□□□□ -0.26
VRK1-201ENST00000216639 IGHG4P01861 327 aa13.4□□□□□ -0.26
VRK1-201ENST00000216639 CIARTQ8N365 385 aaPredicted RBP13.4□□□□□ -0.26
VRK1-201ENST00000216639 OR4B1Q8NGF8 309 aa13.4□□□□□ -0.26
VRK1-201ENST00000216639 VPS13CQ709C8 3753 aa13.4□□□□□ -0.26
VRK1-201ENST00000216639 IGHV3-66A0A0C4DH42 116 aa13.39□□□□□ -0.27
VRK1-201ENST00000216639 SNURFLB1AK76 121 aa13.39□□□□□ -0.27
VRK1-201ENST00000216639 ZNF207O43670 478 aaKnown RBP13.39□□□□□ -0.27
VRK1-201ENST00000216639 CBLN1P23435 193 aa13.39□□□□□ -0.27
VRK1-201ENST00000216639 S100A2P29034 98 aa13.39□□□□□ -0.27
VRK1-201ENST00000216639 HIST2H2BCQ6DN03 193 aa13.39□□□□□ -0.27
VRK1-201ENST00000216639 RASL11AQ6T310 242 aa13.39□□□□□ -0.27
VRK1-201ENST00000216639 MRPL18Q9H0U6 180 aaKnown RBP13.39□□□□□ -0.27
VRK1-201ENST00000216639 PRRC2AP48634 2157 aaKnown RBP13.39□□□□□ -0.27
VRK1-201ENST00000216639 CHEK1O14757 476 aa13.39□□□□□ -0.27
VRK1-201ENST00000216639 HOXA3O43365 443 aaPredicted RBP13.39□□□□□ -0.27
VRK1-201ENST00000216639 SPINK4O60575 86 aa13.39□□□□□ -0.27
VRK1-201ENST00000216639 CT45A10P0DMU9 189 aa13.39□□□□□ -0.27
VRK1-201ENST00000216639 SLC35B1P78383 322 aa13.39□□□□□ -0.27
VRK1-201ENST00000216639 SAPCD1Q5SSQ6 148 aa13.39□□□□□ -0.27
VRK1-201ENST00000216639 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa13.39□□□□□ -0.27
VRK1-201ENST00000216639 WFDC11Q8NEX6 87 aa13.39□□□□□ -0.27
VRK1-201ENST00000216639 TRBV12-3P01733 135 aa13.38□□□□□ -0.27
VRK1-201ENST00000216639 APOHP02749 345 aaPredicted RBP13.38□□□□□ -0.27
VRK1-201ENST00000216639 PSMB8P28062 276 aa13.38□□□□□ -0.27
VRK1-201ENST00000216639 TMEM95Q3KNT9 176 aa13.38□□□□□ -0.27
VRK1-201ENST00000216639 COA6Q5JTJ3 125 aaKnown RBP13.38□□□□□ -0.27
VRK1-201ENST00000216639 LINC00322Q6ZN03 302 aaPredicted RBP13.38□□□□□ -0.27
VRK1-201ENST00000216639 HIST3H2BBQ8N257 126 aa13.38□□□□□ -0.27
VRK1-201ENST00000216639 GFRA4Q9GZZ7 299 aa13.38□□□□□ -0.27
VRK1-201ENST00000216639 IGHV3OR16-13A0A075B7E8 117 aa13.37□□□□□ -0.27
VRK1-201ENST00000216639 IGHV3-74A0A0B4J1X5 117 aa13.37□□□□□ -0.27
VRK1-201ENST00000216639 A0A1W2PS18 150 aa13.37□□□□□ -0.27
VRK1-201ENST00000216639 MRPL54Q6P161 138 aaKnown RBP13.37□□□□□ -0.27
VRK1-201ENST00000216639 C16orf54Q6UWD8 224 aa13.37□□□□□ -0.27
VRK1-201ENST00000216639 NUP35Q8NFH5 326 aa13.37□□□□□ -0.27
VRK1-201ENST00000216639 NEU1Q99519 415 aa13.37□□□□□ -0.27
VRK1-201ENST00000216639 CLEC5AQ9NY25 188 aa13.37□□□□□ -0.27
VRK1-201ENST00000216639 IGHV3-49A0A0A0MS15 119 aa13.36□□□□□ -0.27
VRK1-201ENST00000216639 FAM231BA6NCW3 169 aa13.36□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 152.5 ms