RNA–Protein interactions for RNA: ENST00000637699.1

CLN3-262, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,228 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-262ENST00000637699 F5H768 121 aa13.62□□□□□ -0.23
CLN3-262ENST00000637699 MEOX2P50222 304 aa13.62□□□□□ -0.23
CLN3-262ENST00000637699 SRPXP78539 464 aa13.62□□□□□ -0.23
CLN3-262ENST00000637699 BAK1Q16611 211 aa13.62□□□□□ -0.23
CLN3-262ENST00000637699 SAMD13Q5VXD3 122 aa13.62□□□□□ -0.23
CLN3-262ENST00000637699 DEDD2Q8WXF8 326 aa13.62□□□□□ -0.23
CLN3-262ENST00000637699 RSG1Q9BU20 258 aa13.62□□□□□ -0.23
CLN3-262ENST00000637699 SLC25A22Q9H936 323 aa13.62□□□□□ -0.23
CLN3-262ENST00000637699 A8MTW9 85 aa13.61□□□□□ -0.23
CLN3-262ENST00000637699 M0R2Z0 102 aa13.61□□□□□ -0.23
CLN3-262ENST00000637699 VAMP1P23763 118 aa13.61□□□□□ -0.23
CLN3-262ENST00000637699 GALR1P47211 349 aa13.61□□□□□ -0.23
CLN3-262ENST00000637699 FCN2Q15485 313 aa13.61□□□□□ -0.23
CLN3-262ENST00000637699 SPINK13Q1W4C9 94 aa13.61□□□□□ -0.23
CLN3-262ENST00000637699 SDHCQ99643 169 aaPredicted RBP13.61□□□□□ -0.23
CLN3-262ENST00000637699 SLC25A32Q9H2D1 315 aa13.61□□□□□ -0.23
CLN3-262ENST00000637699 PITX3O75364 302 aa13.6□□□□□ -0.23
CLN3-262ENST00000637699 CNN1P51911 297 aaKnown RBP13.6□□□□□ -0.23
CLN3-262ENST00000637699 ATP5IP56385 69 aaPredicted RBP13.6□□□□□ -0.23
CLN3-262ENST00000637699 PPP1R1AQ13522 171 aa13.6□□□□□ -0.23
CLN3-262ENST00000637699 LRTM2Q8N967 370 aa13.6□□□□□ -0.23
CLN3-262ENST00000637699 OR1S1Q8NH92 325 aa13.6□□□□□ -0.23
CLN3-262ENST00000637699 C17orf77Q96MU5 243 aa13.6□□□□□ -0.23
CLN3-262ENST00000637699 TRGV9Q99603 122 aa13.6□□□□□ -0.23
CLN3-262ENST00000637699 IGKV1OR2-108A0A075B7D4 117 aa13.59□□□□□ -0.23
CLN3-262ENST00000637699 CRXO43186 299 aaPredicted RBP13.59□□□□□ -0.23
CLN3-262ENST00000637699 SFT2D2O95562 160 aa13.59□□□□□ -0.23
CLN3-262ENST00000637699 INSP01308 110 aa13.59□□□□□ -0.23
CLN3-262ENST00000637699 AZU1P20160 251 aa13.59□□□□□ -0.23
CLN3-262ENST00000637699 CCL18P55774 89 aa13.59□□□□□ -0.23
CLN3-262ENST00000637699 IGFL4Q6B9Z1 124 aa13.59□□□□□ -0.23
CLN3-262ENST00000637699 Q8N1X5 172 aa13.59□□□□□ -0.23
CLN3-262ENST00000637699 OR11H7Q8NGC8 314 aa13.59□□□□□ -0.23
CLN3-262ENST00000637699 PAIP2BQ9ULR5 123 aaKnown RBP13.59□□□□□ -0.23
CLN3-262ENST00000637699 LINC00588Q9Y4M8 146 aa13.59□□□□□ -0.23
CLN3-262ENST00000637699 DUXBA0A1W2PPF3 345 aa13.58□□□□□ -0.24
CLN3-262ENST00000637699 ZNF98A6NK75 572 aa13.58□□□□□ -0.24
CLN3-262ENST00000637699 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa13.58□□□□□ -0.24
CLN3-262ENST00000637699 BAP18Q8IXM2 172 aa13.58□□□□□ -0.24
CLN3-262ENST00000637699 SCRT2Q9NQ03 307 aa13.58□□□□□ -0.24
CLN3-262ENST00000637699 DUSP14O95147 198 aaKnown RBP13.57□□□□□ -0.24
CLN3-262ENST00000637699 ATP5G1P05496 136 aa13.57□□□□□ -0.24
CLN3-262ENST00000637699 IAPPP10997 89 aa13.57□□□□□ -0.24
CLN3-262ENST00000637699 ATP5G3P48201 142 aa13.57□□□□□ -0.24
CLN3-262ENST00000637699 RAB11AP62491 216 aa13.57□□□□□ -0.24
CLN3-262ENST00000637699 SPATA12Q7Z6I5 190 aa13.57□□□□□ -0.24
CLN3-262ENST00000637699 THAP8Q8NA92 274 aa13.57□□□□□ -0.24
CLN3-262ENST00000637699 HERC1Q15751 4861 aa13.56□□□□□ -0.24
CLN3-262ENST00000637699 TRAV12-2A0A075B6T6 113 aa13.56□□□□□ -0.24
CLN3-262ENST00000637699 PIGBOS1A0A0B4J2F0 54 aa13.56□□□□□ -0.24
CLN3-262ENST00000637699 LINC00854A0A1B0GVQ3 168 aa13.56□□□□□ -0.24
CLN3-262ENST00000637699 PLAC8L1A1L4L8 177 aa13.56□□□□□ -0.24
CLN3-262ENST00000637699 ORM2P19652 201 aa13.56□□□□□ -0.24
CLN3-262ENST00000637699 TSPOP30536 169 aa13.56□□□□□ -0.24
CLN3-262ENST00000637699 B2MP61769 119 aa13.56□□□□□ -0.24
CLN3-262ENST00000637699 GGNBP1Q5YKI7 109 aa13.56□□□□□ -0.24
CLN3-262ENST00000637699 TRIQKQ629K1 86 aa13.56□□□□□ -0.24
CLN3-262ENST00000637699 RNF182Q8N6D2 247 aa13.56□□□□□ -0.24
CLN3-262ENST00000637699 SLC25A39Q9BZJ4 359 aaPredicted RBP13.56□□□□□ -0.24
CLN3-262ENST00000637699 FLVCR2Q9UPI3 526 aa13.56□□□□□ -0.24
CLN3-262ENST00000637699 CBY3A6NI87 242 aa13.55□□□□□ -0.24
CLN3-262ENST00000637699 NDUFB6O95139 128 aa13.55□□□□□ -0.24
CLN3-262ENST00000637699 CFDP00746 253 aaPredicted RBP13.55□□□□□ -0.24
CLN3-262ENST00000637699 HOXB5P09067 269 aa13.55□□□□□ -0.24
CLN3-262ENST00000637699 SLC25A6P12236 298 aa13.55□□□□□ -0.24
CLN3-262ENST00000637699 GATA2P23769 480 aaPredicted RBP13.55□□□□□ -0.24
CLN3-262ENST00000637699 INPP1P49441 399 aa13.55□□□□□ -0.24
CLN3-262ENST00000637699 FGL1Q08830 312 aa13.55□□□□□ -0.24
CLN3-262ENST00000637699 CLINT1Q14677 625 aa13.55□□□□□ -0.24
CLN3-262ENST00000637699 OR1B1Q8NGR6 318 aa13.55□□□□□ -0.24
CLN3-262ENST00000637699 RNF141Q8WVD5 230 aa13.55□□□□□ -0.24
CLN3-262ENST00000637699 LINC01587Q99440 93 aa13.55□□□□□ -0.24
CLN3-262ENST00000637699 TRAV8-2A0A0B4J237 113 aa13.54□□□□□ -0.24
CLN3-262ENST00000637699 C9orf170A2RU37 121 aa13.54□□□□□ -0.24
CLN3-262ENST00000637699 NAP1L6A6NFF2 107 aa13.54□□□□□ -0.24
CLN3-262ENST00000637699 HTN1P15515 57 aa13.54□□□□□ -0.24
CLN3-262ENST00000637699 BTCP35070 178 aa13.54□□□□□ -0.24
CLN3-262ENST00000637699 TMEM182Q6ZP80 229 aaPredicted RBP13.54□□□□□ -0.24
CLN3-262ENST00000637699 SSX7Q7RTT5 188 aa13.54□□□□□ -0.24
CLN3-262ENST00000637699 OR4D5Q8NGN0 318 aa13.54□□□□□ -0.24
CLN3-262ENST00000637699 SLC45A2Q9UMX9 530 aa13.54□□□□□ -0.24
CLN3-262ENST00000637699 UBE2MP61081 183 aaKnown RBP13.53□□□□□ -0.24
CLN3-262ENST00000637699 ZNF738Q8NE65 137 aa13.53□□□□□ -0.24
CLN3-262ENST00000637699 BPIFCQ8NFQ6 507 aa13.53□□□□□ -0.24
CLN3-262ENST00000637699 GPR82Q96P67 336 aa13.53□□□□□ -0.24
CLN3-262ENST00000637699 TMEM147Q9BVK8 224 aa13.53□□□□□ -0.24
CLN3-262ENST00000637699 Q9H8V8 135 aa13.53□□□□□ -0.24
CLN3-262ENST00000637699 BOLA2-SMG1P6H3BVE0 249 aa13.52□□□□□ -0.25
CLN3-262ENST00000637699 IL7P13232 177 aa13.52□□□□□ -0.25
CLN3-262ENST00000637699 RHOBP62745 196 aa13.52□□□□□ -0.25
CLN3-262ENST00000637699 BATF3Q9NR55 127 aa13.52□□□□□ -0.25
CLN3-262ENST00000637699 NDUFA13Q9P0J0 144 aa13.52□□□□□ -0.25
CLN3-262ENST00000637699 ADAP1O75689 374 aa13.51□□□□□ -0.25
CLN3-262ENST00000637699 HIST1H1AQ02539 215 aaPredicted RBP13.51□□□□□ -0.25
CLN3-262ENST00000637699 UHRF2Q96PU4 802 aa13.51□□□□□ -0.25
CLN3-262ENST00000637699 PPP1R14DQ9NXH3 145 aa13.51□□□□□ -0.25
CLN3-262ENST00000637699 WRBO00258 174 aa13.5□□□□□ -0.25
CLN3-262ENST00000637699 SYNGR2O43760 224 aa13.5□□□□□ -0.25
CLN3-262ENST00000637699 MED6O75586 246 aa13.5□□□□□ -0.25
CLN3-262ENST00000637699 OR4E1P0C645 316 aa13.5□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms