RNA–Protein interactions for RNA: ENST00000628023.3

CLN3-239, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,183 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-239ENST00000628023 DCANP1Q8TF63 244 aa13.46□□□□□ -0.25
CLN3-239ENST00000628023 GPR82Q96P67 336 aa13.46□□□□□ -0.25
CLN3-239ENST00000628023 PFDN5Q99471 154 aa13.46□□□□□ -0.25
CLN3-239ENST00000628023 FAM110AQ9BQ89 295 aa13.46□□□□□ -0.25
CLN3-239ENST00000628023 MAP6D1Q9H9H5 199 aa13.46□□□□□ -0.25
CLN3-239ENST00000628023 C19orf73Q9NVV2 129 aa13.46□□□□□ -0.25
CLN3-239ENST00000628023 SMLR1H3BR10 107 aa13.45□□□□□ -0.26
CLN3-239ENST00000628023 K7EQG2 157 aa13.45□□□□□ -0.26
CLN3-239ENST00000628023 ZNF688P0C7X2 276 aa13.45□□□□□ -0.26
CLN3-239ENST00000628023 PATE2Q6UY27 113 aa13.45□□□□□ -0.26
CLN3-239ENST00000628023 APRG1Q8IVJ8 170 aa13.45□□□□□ -0.26
CLN3-239ENST00000628023 FAM24BQ8N5W8 94 aa13.45□□□□□ -0.26
CLN3-239ENST00000628023 ZMAT4Q9H898 229 aa13.45□□□□□ -0.26
CLN3-239ENST00000628023 DNAJC4Q9NNZ3 241 aa13.45□□□□□ -0.26
CLN3-239ENST00000628023 RPL7P18124 248 aaKnown RBP13.44□□□□□ -0.26
CLN3-239ENST00000628023 ATF4P18848 351 aaPredicted RBP13.44□□□□□ -0.26
CLN3-239ENST00000628023 DEFB131AP59861 70 aa13.44□□□□□ -0.26
CLN3-239ENST00000628023 SNRPD3P62318 126 aaKnown RBP13.44□□□□□ -0.26
CLN3-239ENST00000628023 Q6ZNX1 250 aa13.44□□□□□ -0.26
CLN3-239ENST00000628023 SBSPONQ8IVN8 264 aa13.44□□□□□ -0.26
CLN3-239ENST00000628023 RCHY1Q96PM5 261 aa13.44□□□□□ -0.26
CLN3-239ENST00000628023 WFDC1Q9HC57 220 aa13.44□□□□□ -0.26
CLN3-239ENST00000628023 hCG_2014768A0A024R1R8 64 aa13.43□□□□□ -0.26
CLN3-239ENST00000628023 ZNF266Q14584 549 aa13.43□□□□□ -0.26
CLN3-239ENST00000628023 MUC7Q8TAX7 377 aa13.43□□□□□ -0.26
CLN3-239ENST00000628023 TMEM37Q8WXS4 190 aa13.43□□□□□ -0.26
CLN3-239ENST00000628023 RSG1Q9BU20 258 aa13.43□□□□□ -0.26
CLN3-239ENST00000628023 TNFSF18Q9UNG2 199 aa13.43□□□□□ -0.26
CLN3-239ENST00000628023 RBMY1BA6NDE4 496 aaKnown RBP13.42□□□□□ -0.26
CLN3-239ENST00000628023 RBMY1EA6NEQ0 496 aaKnown RBP13.42□□□□□ -0.26
CLN3-239ENST00000628023 ARPC5O15511 151 aa13.42□□□□□ -0.26
CLN3-239ENST00000628023 RBMY1DP0C7P1 496 aaKnown RBP13.42□□□□□ -0.26
CLN3-239ENST00000628023 ID1P41134 155 aa13.42□□□□□ -0.26
CLN3-239ENST00000628023 MEOX2P50222 304 aa13.42□□□□□ -0.26
CLN3-239ENST00000628023 ZNF124Q15973 351 aa13.42□□□□□ -0.26
CLN3-239ENST00000628023 PSMG4Q5JS54 123 aa13.42□□□□□ -0.26
CLN3-239ENST00000628023 SAMD13Q5VXD3 122 aa13.42□□□□□ -0.26
CLN3-239ENST00000628023 LOC102724200A0A096LPH7 203 aaPredicted RBP13.41□□□□□ -0.26
CLN3-239ENST00000628023 RNF222A6NCQ9 220 aa13.41□□□□□ -0.26
CLN3-239ENST00000628023 G3V3Q6 166 aa13.41□□□□□ -0.26
CLN3-239ENST00000628023 GATAD1Q8WUU5 269 aa13.41□□□□□ -0.26
CLN3-239ENST00000628023 C16orf92Q96LL3 132 aa13.41□□□□□ -0.26
CLN3-239ENST00000628023 CITED4Q96RK1 184 aa13.41□□□□□ -0.26
CLN3-239ENST00000628023 PARD6GQ9BYG4 376 aaPredicted RBP13.41□□□□□ -0.26
CLN3-239ENST00000628023 RPL35AP18077 110 aaKnown RBP13.4□□□□□ -0.26
CLN3-239ENST00000628023 PSMB3P49720 205 aa13.4□□□□□ -0.26
CLN3-239ENST00000628023 GCSAMLQ5JQS6 135 aa13.4□□□□□ -0.26
CLN3-239ENST00000628023 FFAR4Q5NUL3 377 aa13.4□□□□□ -0.26
CLN3-239ENST00000628023 BPIFA4PQ86YQ2 179 aa13.4□□□□□ -0.26
CLN3-239ENST00000628023 LINC00052Q96N35 136 aa13.4□□□□□ -0.26
CLN3-239ENST00000628023 HAGHQ16775 308 aa13.39□□□□□ -0.27
CLN3-239ENST00000628023 FAM78BQ5VT40 261 aa13.39□□□□□ -0.27
CLN3-239ENST00000628023 MORN5Q5VZ52 161 aa13.39□□□□□ -0.27
CLN3-239ENST00000628023 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa13.39□□□□□ -0.27
CLN3-239ENST00000628023 STHQ8IWL8 128 aa13.39□□□□□ -0.27
CLN3-239ENST00000628023 HSD17B11Q8NBQ5 300 aa13.39□□□□□ -0.27
CLN3-239ENST00000628023 LRRC20Q8TCA0 184 aa13.39□□□□□ -0.27
CLN3-239ENST00000628023 MFFQ9GZY8 342 aa13.39□□□□□ -0.27
CLN3-239ENST00000628023 SEPSECSQ9HD40 501 aaKnown RBP13.39□□□□□ -0.27
CLN3-239ENST00000628023 BORCS7-ASMTA0A0B4J1R7 106 aa13.38□□□□□ -0.27
CLN3-239ENST00000628023 TRAV5A0A0B4J249 113 aa13.38□□□□□ -0.27
CLN3-239ENST00000628023 ISLRO14498 428 aa13.38□□□□□ -0.27
CLN3-239ENST00000628023 APOC4P55056 127 aa13.38□□□□□ -0.27
CLN3-239ENST00000628023 A0A087X0K7 114 aa13.37□□□□□ -0.27
CLN3-239ENST00000628023 KNCNA6PVL3 124 aa13.37□□□□□ -0.27
CLN3-239ENST00000628023 SOCS3O14543 225 aa13.37□□□□□ -0.27
CLN3-239ENST00000628023 ACTL10Q5JWF8 245 aa13.37□□□□□ -0.27
CLN3-239ENST00000628023 CASC10Q5T4H9 136 aa13.37□□□□□ -0.27
CLN3-239ENST00000628023 LINC00322Q6ZN03 302 aaPredicted RBP13.37□□□□□ -0.27
CLN3-239ENST00000628023 MRPL32Q9BYC8 188 aaKnown RBP13.37□□□□□ -0.27
CLN3-239ENST00000628023 TIMM9Q9Y5J7 89 aa13.37□□□□□ -0.27
CLN3-239ENST00000628023 ACOT6Q3I5F7 207 aaPredicted RBP13.36□□□□□ -0.27
CLN3-239ENST00000628023 TAAR5O14804 337 aa13.35□□□□□ -0.27
CLN3-239ENST00000628023 SNRPCP09234 159 aaKnown RBP13.35□□□□□ -0.27
CLN3-239ENST00000628023 SPATA31B1PQ5VZV4 182 aa13.35□□□□□ -0.27
CLN3-239ENST00000628023 RPL7L1Q6DKI1 246 aaKnown RBP13.35□□□□□ -0.27
CLN3-239ENST00000628023 LCN15Q6UWW0 184 aa13.35□□□□□ -0.27
CLN3-239ENST00000628023 ST6GAL2Q96JF0 529 aa13.35□□□□□ -0.27
CLN3-239ENST00000628023 SPATA25Q9BR10 227 aa13.35□□□□□ -0.27
CLN3-239ENST00000628023 FUT9Q9Y231 359 aa13.35□□□□□ -0.27
CLN3-239ENST00000628023 HMSDA8MTL9 139 aa13.34□□□□□ -0.27
CLN3-239ENST00000628023 MRPS12O15235 138 aaKnown RBP13.34□□□□□ -0.27
CLN3-239ENST00000628023 CXCL2P19875 107 aa13.34□□□□□ -0.27
CLN3-239ENST00000628023 ATP6V0CP27449 155 aa13.34□□□□□ -0.27
CLN3-239ENST00000628023 RHOBP62745 196 aa13.34□□□□□ -0.27
CLN3-239ENST00000628023 ZNF345Q14585 488 aa13.34□□□□□ -0.27
CLN3-239ENST00000628023 IGFL4Q6B9Z1 124 aa13.34□□□□□ -0.27
CLN3-239ENST00000628023 MIR17HGQ75NE6 70 aa13.34□□□□□ -0.27
CLN3-239ENST00000628023 AKAP14Q86UN6 197 aa13.34□□□□□ -0.27
CLN3-239ENST00000628023 OR11H4Q8NGC9 324 aa13.34□□□□□ -0.27
CLN3-239ENST00000628023 C17orf77Q96MU5 243 aa13.34□□□□□ -0.27
CLN3-239ENST00000628023 TM2D3Q9BRN9 247 aa13.34□□□□□ -0.27
CLN3-239ENST00000628023 RPRMQ9NS64 109 aa13.34□□□□□ -0.27
CLN3-239ENST00000628023 RFNGQ9Y644 331 aa13.34□□□□□ -0.27
CLN3-239ENST00000628023 KIR2DL5BA0A0G2JN68 375 aa13.33□□□□□ -0.28
CLN3-239ENST00000628023 KIR2DL5BA0A0G2JPC4 375 aa13.33□□□□□ -0.28
CLN3-239ENST00000628023 H3BTX0 84 aa13.33□□□□□ -0.28
CLN3-239ENST00000628023 IGLC2P0DOY2 106 aa13.33□□□□□ -0.28
CLN3-239ENST00000628023 EBLN2Q6P2I7 272 aa13.33□□□□□ -0.28
CLN3-239ENST00000628023 TCTE3Q8IZS6 198 aa13.33□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms