RNA–Protein interactions for RNA: ENST00000616154.1

CDX1-202, Transcript of caudal type homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CDX1, Length 1,343 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-202ENST00000616154 PPP1R14BQ96C90 147 aa13.83□□□□□ -0.2
CDX1-202ENST00000616154 FBXL17Q9UF56 701 aa13.83□□□□□ -0.2
CDX1-202ENST00000616154 PAIP2BQ9ULR5 123 aaKnown RBP13.83□□□□□ -0.2
CDX1-202ENST00000616154 HECTD4Q9Y4D8 3996 aa13.82□□□□□ -0.2
CDX1-202ENST00000616154 IL4P05112 153 aa13.82□□□□□ -0.2
CDX1-202ENST00000616154 RD3LP0DJH9 198 aa13.82□□□□□ -0.2
CDX1-202ENST00000616154 PSG1P11464 419 aa13.82□□□□□ -0.2
CDX1-202ENST00000616154 LEMD1Q68G75 181 aa13.82□□□□□ -0.2
CDX1-202ENST00000616154 FAM24BQ8N5W8 94 aa13.82□□□□□ -0.2
CDX1-202ENST00000616154 OR5C1Q8NGR4 320 aa13.82□□□□□ -0.2
CDX1-202ENST00000616154 AGRNO00468 2067 aa13.82□□□□□ -0.2
CDX1-202ENST00000616154 A0A0D9SG52 128 aa13.81□□□□□ -0.2
CDX1-202ENST00000616154 BUB3O43684 328 aa13.81□□□□□ -0.2
CDX1-202ENST00000616154 LGALSLQ3ZCW2 172 aaPredicted RBP13.81□□□□□ -0.2
CDX1-202ENST00000616154 C9orf62Q8N4C0 152 aa13.81□□□□□ -0.2
CDX1-202ENST00000616154 OR51G1Q8NGK1 321 aa13.81□□□□□ -0.2
CDX1-202ENST00000616154 SLC35E1Q96K37 410 aa13.81□□□□□ -0.2
CDX1-202ENST00000616154 HELTA6NFD8 242 aa13.8□□□□□ -0.2
CDX1-202ENST00000616154 EIF2B2P49770 351 aaKnown RBP13.8□□□□□ -0.2
CDX1-202ENST00000616154 TCTAP57738 103 aa13.8□□□□□ -0.2
CDX1-202ENST00000616154 RPL11P62913 178 aaKnown RBP13.8□□□□□ -0.2
CDX1-202ENST00000616154 TMEM144Q7Z5S9 345 aa13.8□□□□□ -0.2
CDX1-202ENST00000616154 THAP8Q8NA92 274 aa13.8□□□□□ -0.2
CDX1-202ENST00000616154 C2CD4CQ8TF44 421 aa13.8□□□□□ -0.2
CDX1-202ENST00000616154 TMEM147Q9BVK8 224 aa13.8□□□□□ -0.2
CDX1-202ENST00000616154 DEFB4AO15263 64 aa13.79□□□□□ -0.2
CDX1-202ENST00000616154 AP2S1P53680 142 aaPredicted RBP13.79□□□□□ -0.2
CDX1-202ENST00000616154 STHQ8IWL8 128 aa13.79□□□□□ -0.2
CDX1-202ENST00000616154 RNF125Q96EQ8 232 aa13.79□□□□□ -0.2
CDX1-202ENST00000616154 TRGV9Q99603 122 aa13.79□□□□□ -0.2
CDX1-202ENST00000616154 ATP5SQ99766 215 aa13.79□□□□□ -0.2
CDX1-202ENST00000616154 PARD6GQ9BYG4 376 aaPredicted RBP13.79□□□□□ -0.2
CDX1-202ENST00000616154 WFDC1Q9HC57 220 aa13.79□□□□□ -0.2
CDX1-202ENST00000616154 NPVFQ9HCQ7 196 aa13.79□□□□□ -0.2
CDX1-202ENST00000616154 SEPSECSQ9HD40 501 aaKnown RBP13.79□□□□□ -0.2
CDX1-202ENST00000616154 UQCC1Q9NVA1 299 aa13.79□□□□□ -0.2
CDX1-202ENST00000616154 RABAC1Q9UI14 185 aa13.79□□□□□ -0.2
CDX1-202ENST00000616154 WDR83OSQ9Y284 106 aa13.79□□□□□ -0.2
CDX1-202ENST00000616154 IGKV1OR2-108A0A075B7D4 117 aa13.78□□□□□ -0.2
CDX1-202ENST00000616154 BOLA2-SMG1P6H3BVE0 249 aa13.78□□□□□ -0.2
CDX1-202ENST00000616154 TAAR5O14804 337 aa13.78□□□□□ -0.2
CDX1-202ENST00000616154 TMEM41BQ5BJD5 291 aa13.78□□□□□ -0.2
CDX1-202ENST00000616154 Q8NAQ8 132 aa13.78□□□□□ -0.2
CDX1-202ENST00000616154 HERC2O95714 4834 aa13.77□□□□□ -0.2
CDX1-202ENST00000616154 ZFP92A6NM28 416 aa13.77□□□□□ -0.21
CDX1-202ENST00000616154 FABP1P07148 127 aa13.77□□□□□ -0.21
CDX1-202ENST00000616154 ZNF90Q03938 601 aa13.77□□□□□ -0.21
CDX1-202ENST00000616154 CLINT1Q14677 625 aa13.77□□□□□ -0.21
CDX1-202ENST00000616154 TMUB2Q71RG4 321 aa13.77□□□□□ -0.21
CDX1-202ENST00000616154 TRPT1Q86TN4 253 aaKnown RBP13.77□□□□□ -0.21
CDX1-202ENST00000616154 STXBP6Q8NFX7 210 aa13.77□□□□□ -0.21
CDX1-202ENST00000616154 HRH4Q9H3N8 390 aa13.77□□□□□ -0.21
CDX1-202ENST00000616154 CYTL1Q9NRR1 136 aa13.77□□□□□ -0.21
CDX1-202ENST00000616154 GIG44P09565 113 aaPredicted RBP13.76□□□□□ -0.21
CDX1-202ENST00000616154 NKX2-5P52952 324 aaPredicted RBP13.76□□□□□ -0.21
CDX1-202ENST00000616154 PRR20EP86478 221 aa13.76□□□□□ -0.21
CDX1-202ENST00000616154 PRR20CP86479 221 aa13.76□□□□□ -0.21
CDX1-202ENST00000616154 PRR20DP86480 221 aa13.76□□□□□ -0.21
CDX1-202ENST00000616154 PRR20BP86481 221 aa13.76□□□□□ -0.21
CDX1-202ENST00000616154 PRR20AP86496 221 aa13.76□□□□□ -0.21
CDX1-202ENST00000616154 MORN3Q6PF18 240 aaPredicted RBP13.76□□□□□ -0.21
CDX1-202ENST00000616154 SMIM3Q9BZL3 60 aa13.76□□□□□ -0.21
CDX1-202ENST00000616154 C11orf94C9JXX5 98 aa13.75□□□□□ -0.21
CDX1-202ENST00000616154 BCL2L11O43521 198 aa13.75□□□□□ -0.21
CDX1-202ENST00000616154 MPDU1O75352 247 aa13.75□□□□□ -0.21
CDX1-202ENST00000616154 CFDP00746 253 aaPredicted RBP13.75□□□□□ -0.21
CDX1-202ENST00000616154 SPP1P10451 314 aa13.75□□□□□ -0.21
CDX1-202ENST00000616154 C1orf194Q5T5A4 169 aa13.75□□□□□ -0.21
CDX1-202ENST00000616154 ARPC5LQ9BPX5 153 aa13.75□□□□□ -0.21
CDX1-202ENST00000616154 ARL6Q9H0F7 186 aa13.75□□□□□ -0.21
CDX1-202ENST00000616154 NRN1Q9NPD7 142 aa13.75□□□□□ -0.21
CDX1-202ENST00000616154 PFDN2Q9UHV9 154 aa13.75□□□□□ -0.21
CDX1-202ENST00000616154 UBE2L5PA0A1B0GUS4 154 aa13.74□□□□□ -0.21
CDX1-202ENST00000616154 AKR1C1Q04828 323 aa13.74□□□□□ -0.21
CDX1-202ENST00000616154 ZNF266Q14584 549 aa13.74□□□□□ -0.21
CDX1-202ENST00000616154 TEPPQ6URK8 271 aa13.74□□□□□ -0.21
CDX1-202ENST00000616154 SIGLEC15Q6ZMC9 328 aa13.74□□□□□ -0.21
CDX1-202ENST00000616154 WDR61Q9GZS3 305 aaKnown RBP13.74□□□□□ -0.21
CDX1-202ENST00000616154 ARV1Q9H2C2 271 aa13.74□□□□□ -0.21
CDX1-202ENST00000616154 APLNQ9ULZ1 77 aa13.74□□□□□ -0.21
CDX1-202ENST00000616154 SLC45A2Q9UMX9 530 aa13.74□□□□□ -0.21
CDX1-202ENST00000616154 IGHV4-28A0A0C4DH34 117 aa13.73□□□□□ -0.21
CDX1-202ENST00000616154 ZNF705EA8MWA4 302 aaPredicted RBP13.73□□□□□ -0.21
CDX1-202ENST00000616154 ZNF688P0C7X2 276 aa13.73□□□□□ -0.21
CDX1-202ENST00000616154 RBMY1A1P0DJD3 496 aaKnown RBP13.73□□□□□ -0.21
CDX1-202ENST00000616154 RBMY1CP0DJD4 496 aa13.73□□□□□ -0.21
CDX1-202ENST00000616154 MIFP14174 115 aa13.73□□□□□ -0.21
CDX1-202ENST00000616154 C4BPBP20851 252 aa13.73□□□□□ -0.21
CDX1-202ENST00000616154 RBMY1FQ15415 496 aaKnown RBP13.73□□□□□ -0.21
CDX1-202ENST00000616154 MGST2Q99735 147 aa13.73□□□□□ -0.21
CDX1-202ENST00000616154 KRTAP17-1Q9BYP8 105 aa13.73□□□□□ -0.21
CDX1-202ENST00000616154 KANTRA0A1W2PQU2 76 aa13.72□□□□□ -0.21
CDX1-202ENST00000616154 SMCO3A2RU48 225 aa13.72□□□□□ -0.21
CDX1-202ENST00000616154 KNCNA6PVL3 124 aa13.72□□□□□ -0.21
CDX1-202ENST00000616154 IGLL5B9A064 214 aa13.72□□□□□ -0.21
CDX1-202ENST00000616154 RPL7L1Q6DKI1 246 aaKnown RBP13.72□□□□□ -0.21
CDX1-202ENST00000616154 IFNA5P01569 189 aa13.71□□□□□ -0.21
CDX1-202ENST00000616154 OPCMLQ14982 345 aa13.71□□□□□ -0.21
CDX1-202ENST00000616154 STOML3Q8TAV4 291 aa13.71□□□□□ -0.21
CDX1-202ENST00000616154 PBDC1Q9BVG4 233 aa13.71□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms