RNA–Protein interactions for RNA: ENST00000613670.4

LIG1-221, Transcript of DNA ligase 1, humanhuman

TSL 1 (best) BASIC

Gene LIG1, Length 3,949 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-221ENST00000613670 PPP1R27Q86WC6 154 aa10.15□□□□□ -0.78
LIG1-221ENST00000613670 ZNF414Q96IQ9 312 aa10.15□□□□□ -0.78
LIG1-221ENST00000613670 PSG8Q9UQ74 426 aa10.15□□□□□ -0.78
LIG1-221ENST00000613670 SOX21Q9Y651 276 aaPredicted RBP10.15□□□□□ -0.78
LIG1-221ENST00000613670 RPL11P62913 178 aaKnown RBP10.14□□□□□ -0.79
LIG1-221ENST00000613670 GDF5OSQ5U4N7 250 aa10.14□□□□□ -0.79
LIG1-221ENST00000613670 SPRY4Q9C004 299 aa10.14□□□□□ -0.79
LIG1-221ENST00000613670 A1L4Q6 167 aa10.14□□□□□ -0.79
LIG1-221ENST00000613670 ITGB1BP1O14713 200 aa10.14□□□□□ -0.79
LIG1-221ENST00000613670 ASCL5Q7RTU5 278 aa10.14□□□□□ -0.79
LIG1-221ENST00000613670 C8orf46Q8TAG6 207 aa10.14□□□□□ -0.79
LIG1-221ENST00000613670 OTORQ9NRC9 128 aa10.14□□□□□ -0.79
LIG1-221ENST00000613670 FAM231DQ6ZW35 169 aa10.14□□□□□ -0.79
LIG1-221ENST00000613670 NCR2O95944 276 aa10.14□□□□□ -0.79
LIG1-221ENST00000613670 SLC25A39Q9BZJ4 359 aaPredicted RBP10.14□□□□□ -0.79
LIG1-221ENST00000613670 PPIAL4CA0A0B4J2A2 164 aa10.13□□□□□ -0.79
LIG1-221ENST00000613670 NDUFB8O95169 186 aa10.13□□□□□ -0.79
LIG1-221ENST00000613670 PPIAL4GP0DN37 164 aa10.13□□□□□ -0.79
LIG1-221ENST00000613670 PPIFP30405 207 aaKnown RBP10.13□□□□□ -0.79
LIG1-221ENST00000613670 CFHR2P36980 270 aa10.13□□□□□ -0.79
LIG1-221ENST00000613670 HIST1H1AQ02539 215 aaPredicted RBP10.13□□□□□ -0.79
LIG1-221ENST00000613670 GUSBP1Q15486 140 aa10.13□□□□□ -0.79
LIG1-221ENST00000613670 POU2AF1Q16633 256 aa10.13□□□□□ -0.79
LIG1-221ENST00000613670 TRAV30A0A087WSZ9 112 aa10.13□□□□□ -0.79
LIG1-221ENST00000613670 TOMM40O96008 361 aa10.13□□□□□ -0.79
LIG1-221ENST00000613670 TMEM97Q5BJF2 176 aa10.13□□□□□ -0.79
LIG1-221ENST00000613670 IGLC7A0M8Q6 106 aa10.13□□□□□ -0.79
LIG1-221ENST00000613670 D6R8Y8 96 aa10.13□□□□□ -0.79
LIG1-221ENST00000613670 OR5AN1Q8NGI8 311 aa10.13□□□□□ -0.79
LIG1-221ENST00000613670 MEGF9Q9H1U4 602 aa10.13□□□□□ -0.79
LIG1-221ENST00000613670 WDFY4Q6ZS81 3184 aa10.12□□□□□ -0.79
LIG1-221ENST00000613670 ANKHD1Q8IWZ3 2542 aaKnown RBP10.12□□□□□ -0.79
LIG1-221ENST00000613670 SMKR1H3BMG3 65 aa10.12□□□□□ -0.79
LIG1-221ENST00000613670 PLP1P60201 277 aa10.12□□□□□ -0.79
LIG1-221ENST00000613670 OR4A5Q8NH83 315 aa10.12□□□□□ -0.79
LIG1-221ENST00000613670 TMEM133Q9H2Q1 129 aa10.12□□□□□ -0.79
LIG1-221ENST00000613670 IGHV3-49A0A0A0MS15 119 aa10.12□□□□□ -0.79
LIG1-221ENST00000613670 CD3EP07766 207 aa10.12□□□□□ -0.79
LIG1-221ENST00000613670 IFI27P40305 119 aaPredicted RBP10.12□□□□□ -0.79
LIG1-221ENST00000613670 RBPJQ06330 500 aa10.12□□□□□ -0.79
LIG1-221ENST00000613670 TIMD4Q96H15 378 aa10.12□□□□□ -0.79
LIG1-221ENST00000613670 GAGE12BA1L429 117 aa10.12□□□□□ -0.79
LIG1-221ENST00000613670 WT1P19544 449 aaPredicted RBP10.12□□□□□ -0.79
LIG1-221ENST00000613670 PSG9Q00887 426 aa10.12□□□□□ -0.79
LIG1-221ENST00000613670 IGFL4Q6B9Z1 124 aa10.12□□□□□ -0.79
LIG1-221ENST00000613670 Q86TA4 180 aa10.12□□□□□ -0.79
LIG1-221ENST00000613670 CST9LQ9H4G1 147 aa10.12□□□□□ -0.79
LIG1-221ENST00000613670 RALYQ9UKM9 306 aaKnown RBP10.12□□□□□ -0.79
LIG1-221ENST00000613670 SPG11Q96JI7 2443 aa10.11□□□□□ -0.79
LIG1-221ENST00000613670 IGHV3-66A0A0C4DH42 116 aa10.11□□□□□ -0.79
LIG1-221ENST00000613670 CTRLP40313 264 aa10.11□□□□□ -0.79
LIG1-221ENST00000613670 AMN1Q8IY45 258 aa10.11□□□□□ -0.79
LIG1-221ENST00000613670 ORMDL3Q8N138 153 aa10.11□□□□□ -0.79
LIG1-221ENST00000613670 CLEC3BP05452 202 aa10.11□□□□□ -0.79
LIG1-221ENST00000613670 RITA1Q96K30 269 aa10.11□□□□□ -0.79
LIG1-221ENST00000613670 TRGV9Q99603 122 aa10.11□□□□□ -0.79
LIG1-221ENST00000613670 NPIPB5A8MRT5 1133 aa10.11□□□□□ -0.79
LIG1-221ENST00000613670 FABP2P12104 132 aa10.11□□□□□ -0.79
LIG1-221ENST00000613670 ZNF833PQ6ZTB9 187 aa10.11□□□□□ -0.79
LIG1-221ENST00000613670 RNF125Q96EQ8 232 aa10.11□□□□□ -0.79
LIG1-221ENST00000613670 COL25A1Q9BXS0 654 aaPredicted RBP10.11□□□□□ -0.79
LIG1-221ENST00000613670 IGKV3-7A0A075B6H7 116 aa10.1□□□□□ -0.79
LIG1-221ENST00000613670 MBD3L4A6NDZ8 208 aaPredicted RBP10.1□□□□□ -0.79
LIG1-221ENST00000613670 MBD3L3A6NE82 208 aaPredicted RBP10.1□□□□□ -0.79
LIG1-221ENST00000613670 MBD3L5A6NJ08 208 aaPredicted RBP10.1□□□□□ -0.79
LIG1-221ENST00000613670 IGHV1-8P0DP01 117 aa10.1□□□□□ -0.79
LIG1-221ENST00000613670 LYZL1Q6UWQ5 148 aa10.1□□□□□ -0.79
LIG1-221ENST00000613670 LINC00322Q6ZN03 302 aaPredicted RBP10.1□□□□□ -0.79
LIG1-221ENST00000613670 MBD3L2Q8NHZ7 208 aaPredicted RBP10.1□□□□□ -0.79
LIG1-221ENST00000613670 GTSF1Q8WW33 167 aa10.1□□□□□ -0.79
LIG1-221ENST00000613670 KLK15Q9H2R5 256 aa10.1□□□□□ -0.79
LIG1-221ENST00000613670 DKK4Q9UBT3 224 aa10.1□□□□□ -0.79
LIG1-221ENST00000613670 TMEM213A2RRL7 107 aa10.1□□□□□ -0.79
LIG1-221ENST00000613670 TMEM178BH3BS89 294 aa10.1□□□□□ -0.79
LIG1-221ENST00000613670 ADIPOQQ15848 244 aa10.1□□□□□ -0.79
LIG1-221ENST00000613670 ECSCRQ19T08 205 aa10.1□□□□□ -0.79
LIG1-221ENST00000613670 BVES-AS1Q5T3Y7 98 aa10.1□□□□□ -0.79
LIG1-221ENST00000613670 Q8TAT8 98 aa10.1□□□□□ -0.79
LIG1-221ENST00000613670 C17orf77Q96MU5 243 aa10.1□□□□□ -0.79
LIG1-221ENST00000613670 IGKV2-40A0A087WW87 121 aaPredicted RBP10.1□□□□□ -0.79
LIG1-221ENST00000613670 C22orf46C9J442 243 aa10.1□□□□□ -0.79
LIG1-221ENST00000613670 LHBP01229 141 aa10.1□□□□□ -0.79
LIG1-221ENST00000613670 IGKV2D-40P01614 121 aaPredicted RBP10.1□□□□□ -0.79
LIG1-221ENST00000613670 S100A4P26447 101 aaKnown RBP10.1□□□□□ -0.79
LIG1-221ENST00000613670 TRAV8-6A0A0B4J262 113 aa10.09□□□□□ -0.79
LIG1-221ENST00000613670 EVI2AP22794 236 aa10.09□□□□□ -0.79
LIG1-221ENST00000613670 OCIAD2Q56VL3 154 aa10.09□□□□□ -0.79
LIG1-221ENST00000613670 IGFBPL1Q8WX77 278 aa10.09□□□□□ -0.79
LIG1-221ENST00000613670 SIGLEC9Q9Y336 463 aa10.09□□□□□ -0.79
LIG1-221ENST00000613670 SPCS1Q9Y6A9 102 aa10.09□□□□□ -0.79
LIG1-221ENST00000613670 C2orf70A6NJV1 201 aa10.09□□□□□ -0.79
LIG1-221ENST00000613670 WIPF2Q8TF74 440 aaPredicted RBP10.09□□□□□ -0.79
LIG1-221ENST00000613670 CEACAM3P40198 252 aa10.09□□□□□ -0.79
LIG1-221ENST00000613670 MFAP4P55083 255 aa10.09□□□□□ -0.79
LIG1-221ENST00000613670 Q8N976 141 aa10.09□□□□□ -0.79
LIG1-221ENST00000613670 RNASE6Q93091 150 aaKnown RBP10.09□□□□□ -0.79
LIG1-221ENST00000613670 MAP1LC3AQ9H492 121 aa10.09□□□□□ -0.79
LIG1-221ENST00000613670 TMEM160Q9NX00 188 aa10.09□□□□□ -0.79
LIG1-221ENST00000613670 OTOGLQ3ZCN5 2332 aa10.09□□□□□ -0.79
LIG1-221ENST00000613670 TLN1Q9Y490 2541 aaKnown RBP10.08□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 175.3 ms