RNA–Protein interactions for RNA: ENST00000601689.1

UPF1-212, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 561 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-212ENST00000601689 RSG1Q9BU20 258 aa14.27□□□□□ -0.13
UPF1-212ENST00000601689 MED28Q9H204 178 aa14.27□□□□□ -0.13
UPF1-212ENST00000601689 SLC25A32Q9H2D1 315 aa14.27□□□□□ -0.13
UPF1-212ENST00000601689 WDR83OSQ9Y284 106 aa14.27□□□□□ -0.13
UPF1-212ENST00000601689 FGF7P21781 194 aa14.26□□□□□ -0.13
UPF1-212ENST00000601689 H2BFSP57053 126 aa14.26□□□□□ -0.13
UPF1-212ENST00000601689 EWSR1Q01844 656 aaKnown RBP eCLIP14.26□□□□□ -0.13
UPF1-212ENST00000601689 FGL1Q08830 312 aa14.26□□□□□ -0.13
UPF1-212ENST00000601689 RGS21Q2M5E4 152 aa14.26□□□□□ -0.13
UPF1-212ENST00000601689 VWC2Q2TAL6 325 aa14.26□□□□□ -0.13
UPF1-212ENST00000601689 SPATA31B1PQ5VZV4 182 aa14.26□□□□□ -0.13
UPF1-212ENST00000601689 EBLN2Q6P2I7 272 aa14.26□□□□□ -0.13
UPF1-212ENST00000601689 LRRC20Q8TCA0 184 aa14.26□□□□□ -0.13
UPF1-212ENST00000601689 MGST2Q99735 147 aa14.26□□□□□ -0.13
UPF1-212ENST00000601689 C1QTNF4Q9BXJ3 329 aa14.26□□□□□ -0.13
UPF1-212ENST00000601689 EDA2RQ9HAV5 297 aa14.26□□□□□ -0.13
UPF1-212ENST00000601689 RPRMQ9NS64 109 aa14.26□□□□□ -0.13
UPF1-212ENST00000601689 ALG5Q9Y673 324 aa14.26□□□□□ -0.13
UPF1-212ENST00000601689 KNCNA6PVL3 124 aa14.25□□□□□ -0.13
UPF1-212ENST00000601689 MPC2O95563 127 aa14.25□□□□□ -0.13
UPF1-212ENST00000601689 C10orf113Q5VZT2 155 aa14.25□□□□□ -0.13
UPF1-212ENST00000601689 LINC00305Q7Z4B0 112 aa14.25□□□□□ -0.13
UPF1-212ENST00000601689 TRPT1Q86TN4 253 aaKnown RBP14.25□□□□□ -0.13
UPF1-212ENST00000601689 ZNF709Q8N972 641 aa14.25□□□□□ -0.13
UPF1-212ENST00000601689 OR5C1Q8NGR4 320 aa14.25□□□□□ -0.13
UPF1-212ENST00000601689 THAP6Q8TBB0 222 aa14.25□□□□□ -0.13
UPF1-212ENST00000601689 SCRT1Q9BWW7 348 aa14.25□□□□□ -0.13
UPF1-212ENST00000601689 KCNIP2Q9NS61 270 aa14.25□□□□□ -0.13
UPF1-212ENST00000601689 OR5AC2Q9NZP5 309 aa14.25□□□□□ -0.13
UPF1-212ENST00000601689 AGRNO00468 2067 aa14.24□□□□□ -0.13
UPF1-212ENST00000601689 RPL29P47914 159 aaKnown RBP14.24□□□□□ -0.13
UPF1-212ENST00000601689 B2MP61769 119 aa14.24□□□□□ -0.13
UPF1-212ENST00000601689 NHLH2Q02577 135 aa14.24□□□□□ -0.13
UPF1-212ENST00000601689 BPIFA4PQ86YQ2 179 aa14.24□□□□□ -0.13
UPF1-212ENST00000601689 UHRF2Q96PU4 802 aa14.24□□□□□ -0.13
UPF1-212ENST00000601689 RARRES2Q99969 163 aa14.24□□□□□ -0.13
UPF1-212ENST00000601689 DNAJC4Q9NNZ3 241 aa14.24□□□□□ -0.13
UPF1-212ENST00000601689 FOXI2Q6ZQN5 318 aa14.23□□□□□ -0.13
UPF1-212ENST00000601689 NBEAL2Q6ZNJ1 2754 aa14.22□□□□□ -0.13
UPF1-212ENST00000601689 C17orf112F2Z3M2 114 aa14.22□□□□□ -0.13
UPF1-212ENST00000601689 CHAC2Q8WUX2 184 aa14.22□□□□□ -0.13
UPF1-212ENST00000601689 HLA-DRB4P13762 266 aa14.21□□□□□ -0.13
UPF1-212ENST00000601689 CLINT1Q14677 625 aa14.21□□□□□ -0.13
UPF1-212ENST00000601689 OPCMLQ14982 345 aa14.21□□□□□ -0.13
UPF1-212ENST00000601689 MIC13Q5XKP0 118 aa14.21□□□□□ -0.13
UPF1-212ENST00000601689 OR11H2Q8NH07 326 aa14.21□□□□□ -0.13
UPF1-212ENST00000601689 ASB13Q8WXK3 278 aa14.21□□□□□ -0.13
UPF1-212ENST00000601689 SAV1Q9H4B6 383 aaPredicted RBP14.21□□□□□ -0.13
UPF1-212ENST00000601689 SLC39A9Q9NUM3 307 aa14.21□□□□□ -0.13
UPF1-212ENST00000601689 PXMP4Q9Y6I8 212 aa14.21□□□□□ -0.13
UPF1-212ENST00000601689 HLA-DRB4X5D2U9 266 aa14.21□□□□□ -0.13
UPF1-212ENST00000601689 H0YIZ8 118 aa14.2□□□□□ -0.14
UPF1-212ENST00000601689 H3BMM0 161 aa14.2□□□□□ -0.14
UPF1-212ENST00000601689 SOCS3O14543 225 aa14.2□□□□□ -0.14
UPF1-212ENST00000601689 IFNA5P01569 189 aa14.2□□□□□ -0.14
UPF1-212ENST00000601689 RPL12P30050 165 aaKnown RBP14.2□□□□□ -0.14
UPF1-212ENST00000601689 PRR20EP86478 221 aa14.2□□□□□ -0.14
UPF1-212ENST00000601689 PRR20CP86479 221 aa14.2□□□□□ -0.14
UPF1-212ENST00000601689 PRR20DP86480 221 aa14.2□□□□□ -0.14
UPF1-212ENST00000601689 PRR20BP86481 221 aa14.2□□□□□ -0.14
UPF1-212ENST00000601689 PRR20AP86496 221 aa14.2□□□□□ -0.14
UPF1-212ENST00000601689 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa14.2□□□□□ -0.14
UPF1-212ENST00000601689 PATE2Q6UY27 113 aa14.2□□□□□ -0.14
UPF1-212ENST00000601689 OR4B1Q8NGF8 309 aa14.2□□□□□ -0.14
UPF1-212ENST00000601689 SCGB1C1Q8TD33 95 aa14.2□□□□□ -0.14
UPF1-212ENST00000601689 NPCDR1Q9BY65 106 aa14.2□□□□□ -0.14
UPF1-212ENST00000601689 STAB2Q8WWQ8 2551 aa14.19□□□□□ -0.14
UPF1-212ENST00000601689 A0A087X0K7 114 aa14.19□□□□□ -0.14
UPF1-212ENST00000601689 CXCL2P19875 107 aa14.19□□□□□ -0.14
UPF1-212ENST00000601689 LCN15Q6UWW0 184 aa14.19□□□□□ -0.14
UPF1-212ENST00000601689 TMEM37Q8WXS4 190 aa14.19□□□□□ -0.14
UPF1-212ENST00000601689 ATP5SQ99766 215 aa14.19□□□□□ -0.14
UPF1-212ENST00000601689 RNF126Q9BV68 326 aa14.19□□□□□ -0.14
UPF1-212ENST00000601689 MBD2Q9UBB5 411 aa14.19□□□□□ -0.14
UPF1-212ENST00000601689 DUSP14O95147 198 aaKnown RBP14.18□□□□□ -0.14
UPF1-212ENST00000601689 CASC10Q5T4H9 136 aa14.18□□□□□ -0.14
UPF1-212ENST00000601689 SLC50A1Q9BRV3 221 aa14.18□□□□□ -0.14
UPF1-212ENST00000601689 CLEC5AQ9NY25 188 aa14.18□□□□□ -0.14
UPF1-212ENST00000601689 HSPB11Q9Y547 144 aa14.18□□□□□ -0.14
UPF1-212ENST00000601689 A0A0J9YWU9 116 aa14.17□□□□□ -0.14
UPF1-212ENST00000601689 ZNF738Q8NE65 137 aa14.17□□□□□ -0.14
UPF1-212ENST00000601689 CLUHP3Q96NS8 147 aa14.17□□□□□ -0.14
UPF1-212ENST00000601689 WDR61Q9GZS3 305 aaKnown RBP14.17□□□□□ -0.14
UPF1-212ENST00000601689 IGKV3-20P01619 116 aa14.16□□□□□ -0.14
UPF1-212ENST00000601689 CXCL3P19876 107 aa14.16□□□□□ -0.14
UPF1-212ENST00000601689 FCN2Q15485 313 aa14.16□□□□□ -0.14
UPF1-212ENST00000601689 GUK1Q16774 197 aa14.16□□□□□ -0.14
UPF1-212ENST00000601689 ZFAND6Q6FIF0 208 aa14.16□□□□□ -0.14
UPF1-212ENST00000601689 PPP1R14DQ9NXH3 145 aa14.16□□□□□ -0.14
UPF1-212ENST00000601689 TENM3Q9P273 2699 aa14.16□□□□□ -0.14
UPF1-212ENST00000601689 PSG9Q00887 426 aa14.15□□□□□ -0.14
UPF1-212ENST00000601689 A0A0J9YX75 114 aa14.14□□□□□ -0.15
UPF1-212ENST00000601689 GIPP09681 153 aaPredicted RBP14.14□□□□□ -0.15
UPF1-212ENST00000601689 MIFP14174 115 aa14.14□□□□□ -0.15
UPF1-212ENST00000601689 FAM78BQ5VT40 261 aa14.14□□□□□ -0.15
UPF1-212ENST00000601689 OR11H7Q8NGC8 314 aa14.14□□□□□ -0.15
UPF1-212ENST00000601689 SMIM3Q9BZL3 60 aa14.14□□□□□ -0.15
UPF1-212ENST00000601689 HRH4Q9H3N8 390 aa14.14□□□□□ -0.15
UPF1-212ENST00000601689 XCL2Q9UBD3 114 aa14.14□□□□□ -0.15
UPF1-212ENST00000601689 AMBPP02760 352 aa14.13□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 74 ms