RNA–Protein interactions for RNA: ENST00000597172.5

TRIM28-208, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 577 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-208ENST00000597172 OR4F4Q96R69 305 aa7.16□□□□□ -1.26
TRIM28-208ENST00000597172 PBDC1Q9BVG4 233 aa7.16□□□□□ -1.26
TRIM28-208ENST00000597172 SEPSECSQ9HD40 501 aaKnown RBP7.16□□□□□ -1.26
TRIM28-208ENST00000597172 ELOA3CA0A087WX78 387 aaPredicted RBP7.15□□□□□ -1.26
TRIM28-208ENST00000597172 TRAV5A0A0B4J249 113 aa7.15□□□□□ -1.26
TRIM28-208ENST00000597172 SEC14L6B5MCN3 397 aa7.15□□□□□ -1.26
TRIM28-208ENST00000597172 UMAD1C9J7I0 102 aa7.15□□□□□ -1.26
TRIM28-208ENST00000597172 COX7A2P2O60397 106 aa7.15□□□□□ -1.26
TRIM28-208ENST00000597172 AKR1C8PQ5T2L2 129 aa7.15□□□□□ -1.26
TRIM28-208ENST00000597172 FAM78BQ5VT40 261 aa7.15□□□□□ -1.26
TRIM28-208ENST00000597172 FAM122CQ6P4D5 195 aa7.15□□□□□ -1.26
TRIM28-208ENST00000597172 IL34Q6ZMJ4 242 aa7.15□□□□□ -1.26
TRIM28-208ENST00000597172 MIR17HGQ75NE6 70 aa7.15□□□□□ -1.26
TRIM28-208ENST00000597172 LINC00305Q7Z4B0 112 aa7.15□□□□□ -1.26
TRIM28-208ENST00000597172 SHANK2-AS3Q9BTD1 123 aa7.15□□□□□ -1.26
TRIM28-208ENST00000597172 C20orf24Q9BUV8 137 aa7.15□□□□□ -1.26
TRIM28-208ENST00000597172 SLC25A39Q9BZJ4 359 aaPredicted RBP7.15□□□□□ -1.26
TRIM28-208ENST00000597172 RABAC1Q9UI14 185 aa7.15□□□□□ -1.26
TRIM28-208ENST00000597172 HIGD1AQ9Y241 93 aa7.15□□□□□ -1.26
TRIM28-208ENST00000597172 DNAH10Q8IVF4 4471 aa7.15□□□□□ -1.27
TRIM28-208ENST00000597172 IGHV3-49A0A0A0MS15 119 aa7.14□□□□□ -1.27
TRIM28-208ENST00000597172 TMEM213A2RRL7 107 aa7.14□□□□□ -1.27
TRIM28-208ENST00000597172 ZNF98A6NK75 572 aa7.14□□□□□ -1.27
TRIM28-208ENST00000597172 A8MWP6 167 aa7.14□□□□□ -1.27
TRIM28-208ENST00000597172 H3BRN7 92 aa7.14□□□□□ -1.27
TRIM28-208ENST00000597172 BUB3O43684 328 aa7.14□□□□□ -1.27
TRIM28-208ENST00000597172 IFNA7P01567 189 aa7.14□□□□□ -1.27
TRIM28-208ENST00000597172 C8orf88P0DMB2 117 aa7.14□□□□□ -1.27
TRIM28-208ENST00000597172 NPPCP23582 126 aa7.14□□□□□ -1.27
TRIM28-208ENST00000597172 RAB5CP51148 216 aa7.14□□□□□ -1.27
TRIM28-208ENST00000597172 RHOBP62745 196 aa7.14□□□□□ -1.27
TRIM28-208ENST00000597172 LEMD1Q68G75 181 aa7.14□□□□□ -1.27
TRIM28-208ENST00000597172 ALMS1Q8TCU4 4167 aa7.14□□□□□ -1.27
TRIM28-208ENST00000597172 RNF141Q8WVD5 230 aa7.14□□□□□ -1.27
TRIM28-208ENST00000597172 RAB24Q969Q5 203 aa7.14□□□□□ -1.27
TRIM28-208ENST00000597172 FAM167A-AS1Q96KT0 104 aa7.14□□□□□ -1.27
TRIM28-208ENST00000597172 PFDN5Q99471 154 aa7.14□□□□□ -1.27
TRIM28-208ENST00000597172 SMPXQ9UHP9 88 aa7.14□□□□□ -1.27
TRIM28-208ENST00000597172 FUT9Q9Y231 359 aa7.14□□□□□ -1.27
TRIM28-208ENST00000597172 UFC1Q9Y3C8 167 aa7.14□□□□□ -1.27
TRIM28-208ENST00000597172 IGHV3OR16-13A0A075B7E8 117 aa7.13□□□□□ -1.27
TRIM28-208ENST00000597172 IGHV3-74A0A0B4J1X5 117 aa7.13□□□□□ -1.27
TRIM28-208ENST00000597172 IGHV3-66A0A0C4DH42 116 aa7.13□□□□□ -1.27
TRIM28-208ENST00000597172 IGHV7-4-1A0A0J9YVY3 117 aa7.13□□□□□ -1.27
TRIM28-208ENST00000597172 C2orf70A6NJV1 201 aa7.13□□□□□ -1.27
TRIM28-208ENST00000597172 HMGB3O15347 200 aaKnown RBP7.13□□□□□ -1.27
TRIM28-208ENST00000597172 CSN3P07498 182 aa7.13□□□□□ -1.27
TRIM28-208ENST00000597172 EGFEM1PQ0D2K5 195 aa7.13□□□□□ -1.27
TRIM28-208ENST00000597172 DPPA3Q6W0C5 159 aa7.13□□□□□ -1.27
TRIM28-208ENST00000597172 LINC00482Q8N8I6 264 aa7.13□□□□□ -1.27
TRIM28-208ENST00000597172 OR9G4Q8NGQ1 327 aa7.13□□□□□ -1.27
TRIM28-208ENST00000597172 FAM213BQ8TBF2 198 aa7.13□□□□□ -1.27
TRIM28-208ENST00000597172 PCNPQ8WW12 178 aaKnown RBP7.13□□□□□ -1.27
TRIM28-208ENST00000597172 MBD3L1Q8WWY6 194 aa7.13□□□□□ -1.27
TRIM28-208ENST00000597172 ZNF503Q96F45 646 aa7.13□□□□□ -1.27
TRIM28-208ENST00000597172 METTL26Q96S19 204 aa7.13□□□□□ -1.27
TRIM28-208ENST00000597172 RNF2Q99496 336 aa7.13□□□□□ -1.27
TRIM28-208ENST00000597172 ASCL2Q99929 193 aa7.13□□□□□ -1.27
TRIM28-208ENST00000597172 SCRT1Q9BWW7 348 aa7.13□□□□□ -1.27
TRIM28-208ENST00000597172 SLC25A2Q9BXI2 301 aa7.13□□□□□ -1.27
TRIM28-208ENST00000597172 ACTR3CQ9C0K3 210 aaPredicted RBP7.13□□□□□ -1.27
TRIM28-208ENST00000597172 SLC25A22Q9H936 323 aa7.13□□□□□ -1.27
TRIM28-208ENST00000597172 DAZ1Q9NQZ3 744 aaKnown RBP7.13□□□□□ -1.27
TRIM28-208ENST00000597172 TECRQ9NZ01 308 aaKnown RBP7.13□□□□□ -1.27
TRIM28-208ENST00000597172 UBQLN2Q9UHD9 624 aa7.13□□□□□ -1.27
TRIM28-208ENST00000597172 CTXND1A0A1B0GTU2 59 aa7.12□□□□□ -1.27
TRIM28-208ENST00000597172 A0A1W2PPV4 95 aa7.12□□□□□ -1.27
TRIM28-208ENST00000597172 ZNF705EA8MWA4 302 aaPredicted RBP7.12□□□□□ -1.27
TRIM28-208ENST00000597172 OVOL1O14753 267 aa7.12□□□□□ -1.27
TRIM28-208ENST00000597172 CHEK1O14757 476 aa7.12□□□□□ -1.27
TRIM28-208ENST00000597172 RGS13O14921 159 aa7.12□□□□□ -1.27
TRIM28-208ENST00000597172 MRPS12O15235 138 aaKnown RBP7.12□□□□□ -1.27
TRIM28-208ENST00000597172 STAG3L2P0CL84 134 aa7.12□□□□□ -1.27
TRIM28-208ENST00000597172 STAG3L3P0CL85 134 aa7.12□□□□□ -1.27
TRIM28-208ENST00000597172 FOLR2P14207 255 aa7.12□□□□□ -1.27
TRIM28-208ENST00000597172 CBLN1P23435 193 aa7.12□□□□□ -1.27
TRIM28-208ENST00000597172 CDC34P49427 236 aaPredicted RBP7.12□□□□□ -1.27
TRIM28-208ENST00000597172 CCL20P78556 96 aa7.12□□□□□ -1.27
TRIM28-208ENST00000597172 C16orf54Q6UWD8 224 aa7.12□□□□□ -1.27
TRIM28-208ENST00000597172 LCN15Q6UWW0 184 aa7.12□□□□□ -1.27
TRIM28-208ENST00000597172 ZNF767PQ75MW2 155 aa7.12□□□□□ -1.27
TRIM28-208ENST00000597172 C17orf77Q96MU5 243 aa7.12□□□□□ -1.27
TRIM28-208ENST00000597172 RHPN1-AS1Q9BWJ2 59 aa7.12□□□□□ -1.27
TRIM28-208ENST00000597172 MRPL32Q9BYC8 188 aaKnown RBP7.12□□□□□ -1.27
TRIM28-208ENST00000597172 SELENOKQ9Y6D0 94 aa7.12□□□□□ -1.27
TRIM28-208ENST00000597172 SMAD5-AS1Q9Y6J3 95 aa7.12□□□□□ -1.27
TRIM28-208ENST00000597172 NMBP08949 121 aa7.11□□□□□ -1.27
TRIM28-208ENST00000597172 H2AFB1P0C5Y9 115 aa7.11□□□□□ -1.27
TRIM28-208ENST00000597172 FGF8P55075 233 aaPredicted RBP7.11□□□□□ -1.27
TRIM28-208ENST00000597172 C1orf194Q5T5A4 169 aa7.11□□□□□ -1.27
TRIM28-208ENST00000597172 LYPD6BQ8NI32 183 aa7.11□□□□□ -1.27
TRIM28-208ENST00000597172 SFT2D1Q8WV19 159 aa7.11□□□□□ -1.27
TRIM28-208ENST00000597172 GLMPQ8WWB7 406 aa7.11□□□□□ -1.27
TRIM28-208ENST00000597172 SAT2Q96F10 170 aaPredicted RBP7.11□□□□□ -1.27
TRIM28-208ENST00000597172 ELOVL1Q9BW60 279 aa7.11□□□□□ -1.27
TRIM28-208ENST00000597172 TMPRSS5Q9H3S3 457 aa7.11□□□□□ -1.27
TRIM28-208ENST00000597172 PEMTQ9UBM1 199 aa7.11□□□□□ -1.27
TRIM28-208ENST00000597172 MLXQ9UH92 298 aa7.11□□□□□ -1.27
TRIM28-208ENST00000597172 TRAV1-1A0A0B4J248 108 aa7.1□□□□□ -1.27
TRIM28-208ENST00000597172 MAP1LC3B2A6NCE7 125 aa7.1□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms