RNA–Protein interactions for RNA: ENST00000596672.5

LIG1-213, Transcript of DNA ligase 1, humanhuman

TSL 3

Gene LIG1, Length 792 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-213ENST00000596672 METTL26Q96S19 204 aa7.6□□□□□ -1.19
LIG1-213ENST00000596672 RARRES2Q99969 163 aa7.6□□□□□ -1.19
LIG1-213ENST00000596672 C11orf1Q9H5F2 150 aa7.6□□□□□ -1.19
LIG1-213ENST00000596672 CLEC5AQ9NY25 188 aa7.6□□□□□ -1.19
LIG1-213ENST00000596672 PFDN2Q9UHV9 154 aa7.6□□□□□ -1.19
LIG1-213ENST00000596672 ELOA3CA0A087WX78 387 aaPredicted RBP7.59□□□□□ -1.19
LIG1-213ENST00000596672 RPS10-NUDT3A0A1W2PQS6 291 aa7.59□□□□□ -1.19
LIG1-213ENST00000596672 FAM24AA6NFZ4 105 aa7.59□□□□□ -1.19
LIG1-213ENST00000596672 KRBOX1C9JBD0 128 aa7.59□□□□□ -1.19
LIG1-213ENST00000596672 PRSS46E5RG02 174 aa7.59□□□□□ -1.19
LIG1-213ENST00000596672 DNASE2O00115 360 aaPredicted RBP7.59□□□□□ -1.19
LIG1-213ENST00000596672 SYNGR2O43760 224 aa7.59□□□□□ -1.19
LIG1-213ENST00000596672 IL4P05112 153 aa7.59□□□□□ -1.19
LIG1-213ENST00000596672 PAX9P55771 341 aa7.59□□□□□ -1.19
LIG1-213ENST00000596672 GDF5OSQ5U4N7 250 aa7.59□□□□□ -1.19
LIG1-213ENST00000596672 OR51G1Q8NGK1 321 aa7.59□□□□□ -1.19
LIG1-213ENST00000596672 DTD1Q8TEA8 209 aa7.59□□□□□ -1.19
LIG1-213ENST00000596672 GATAD1Q8WUU5 269 aa7.59□□□□□ -1.19
LIG1-213ENST00000596672 AQP10Q96PS8 301 aa7.59□□□□□ -1.19
LIG1-213ENST00000596672 RAB40CQ96S21 281 aa7.59□□□□□ -1.19
LIG1-213ENST00000596672 SCRT1Q9BWW7 348 aa7.59□□□□□ -1.19
LIG1-213ENST00000596672 TRAV30A0A087WSZ9 112 aa7.58□□□□□ -1.2
LIG1-213ENST00000596672 IGHV4-28A0A0C4DH34 117 aa7.58□□□□□ -1.2
LIG1-213ENST00000596672 KANTRA0A1W2PQU2 76 aa7.58□□□□□ -1.2
LIG1-213ENST00000596672 IGSF23A1L1A6 192 aa7.58□□□□□ -1.2
LIG1-213ENST00000596672 FAM90A26D6RGX4 464 aa7.58□□□□□ -1.2
LIG1-213ENST00000596672 BCL2L11O43521 198 aa7.58□□□□□ -1.2
LIG1-213ENST00000596672 MED6O75586 246 aa7.58□□□□□ -1.2
LIG1-213ENST00000596672 LY6G6CO95867 125 aa7.58□□□□□ -1.2
LIG1-213ENST00000596672 TOMM40O96008 361 aa7.58□□□□□ -1.2
LIG1-213ENST00000596672 CAV2P51636 162 aa7.58□□□□□ -1.2
LIG1-213ENST00000596672 CMC4P56277 68 aaPredicted RBP7.58□□□□□ -1.2
LIG1-213ENST00000596672 ZNF345Q14585 488 aa7.58□□□□□ -1.2
LIG1-213ENST00000596672 ACTL10Q5JWF8 245 aa7.58□□□□□ -1.2
LIG1-213ENST00000596672 Q8WTZ3 238 aa7.58□□□□□ -1.2
LIG1-213ENST00000596672 GRAMD2BQ96HH9 432 aa7.58□□□□□ -1.2
LIG1-213ENST00000596672 ARPC5LQ9BPX5 153 aa7.58□□□□□ -1.2
LIG1-213ENST00000596672 SMIM3Q9BZL3 60 aa7.58□□□□□ -1.2
LIG1-213ENST00000596672 C11orf68Q9H3H3 251 aaKnown RBP7.58□□□□□ -1.2
LIG1-213ENST00000596672 PSENENQ9NZ42 101 aa7.58□□□□□ -1.2
LIG1-213ENST00000596672 A0A1W2PS18 150 aa7.57□□□□□ -1.2
LIG1-213ENST00000596672 ZNF705EA8MWA4 302 aaPredicted RBP7.57□□□□□ -1.2
LIG1-213ENST00000596672 H3BP45 60 aa7.57□□□□□ -1.2
LIG1-213ENST00000596672 SOCS3O14543 225 aa7.57□□□□□ -1.2
LIG1-213ENST00000596672 CFDP00746 253 aaPredicted RBP7.57□□□□□ -1.2
LIG1-213ENST00000596672 IFNA10P01566 189 aa7.57□□□□□ -1.2
LIG1-213ENST00000596672 CD5P06127 495 aa7.57□□□□□ -1.2
LIG1-213ENST00000596672 RD3LP0DJH9 198 aa7.57□□□□□ -1.2
LIG1-213ENST00000596672 PAFAH1B2P68402 229 aa7.57□□□□□ -1.2
LIG1-213ENST00000596672 NHLH2Q02577 135 aa7.57□□□□□ -1.2
LIG1-213ENST00000596672 PSMG4Q5JS54 123 aa7.57□□□□□ -1.2
LIG1-213ENST00000596672 SLC51BQ86UW2 128 aa7.57□□□□□ -1.2
LIG1-213ENST00000596672 SMIM8Q96KF7 97 aa7.57□□□□□ -1.2
LIG1-213ENST00000596672 ZNF471Q9BX82 626 aaPredicted RBP7.57□□□□□ -1.2
LIG1-213ENST00000596672 SLC25A31Q9H0C2 315 aa7.57□□□□□ -1.2
LIG1-213ENST00000596672 SLC25A32Q9H2D1 315 aa7.57□□□□□ -1.2
LIG1-213ENST00000596672 CELA1Q9UNI1 258 aa7.57□□□□□ -1.2
LIG1-213ENST00000596672 TMA7Q9Y2S6 64 aaKnown RBP7.57□□□□□ -1.2
LIG1-213ENST00000596672 PKHD1P08F94 4074 aa7.57□□□□□ -1.2
LIG1-213ENST00000596672 PKD1P98161 4303 aa7.56□□□□□ -1.2
LIG1-213ENST00000596672 NUPR2A6NF83 97 aa7.56□□□□□ -1.2
LIG1-213ENST00000596672 H3BMM0 161 aa7.56□□□□□ -1.2
LIG1-213ENST00000596672 CST7O76096 145 aa7.56□□□□□ -1.2
LIG1-213ENST00000596672 GATA2P23769 480 aaPredicted RBP7.56□□□□□ -1.2
LIG1-213ENST00000596672 SPANXN5Q5MJ07 72 aa7.56□□□□□ -1.2
LIG1-213ENST00000596672 EIF4E3Q8N5X7 224 aaKnown RBP7.56□□□□□ -1.2
LIG1-213ENST00000596672 TMEM252Q8N6L7 170 aa7.56□□□□□ -1.2
LIG1-213ENST00000596672 C11orf45Q8TAV5 145 aa7.56□□□□□ -1.2
LIG1-213ENST00000596672 RNF125Q96EQ8 232 aa7.56□□□□□ -1.2
LIG1-213ENST00000596672 WFDC1Q9HC57 220 aa7.56□□□□□ -1.2
LIG1-213ENST00000596672 CYTL1Q9NRR1 136 aa7.56□□□□□ -1.2
LIG1-213ENST00000596672 LYRM2Q9NU23 88 aaPredicted RBP7.56□□□□□ -1.2
LIG1-213ENST00000596672 FBXL17Q9UF56 701 aa7.56□□□□□ -1.2
LIG1-213ENST00000596672 IFNA4P05014 189 aa7.55□□□□□ -1.2
LIG1-213ENST00000596672 GPX4P36969 197 aaPredicted RBP7.55□□□□□ -1.2
LIG1-213ENST00000596672 STHQ8IWL8 128 aa7.55□□□□□ -1.2
LIG1-213ENST00000596672 THAP8Q8NA92 274 aa7.55□□□□□ -1.2
LIG1-213ENST00000596672 PHYHIPLQ96FC7 376 aa7.55□□□□□ -1.2
LIG1-213ENST00000596672 C20orf173Q96LM9 149 aa7.55□□□□□ -1.2
LIG1-213ENST00000596672 TMEM231Q9H6L2 316 aa7.55□□□□□ -1.2
LIG1-213ENST00000596672 NRN1Q9NPD7 142 aa7.55□□□□□ -1.2
LIG1-213ENST00000596672 APLNQ9ULZ1 77 aa7.55□□□□□ -1.2
LIG1-213ENST00000596672 HELTA6NFD8 242 aa7.54□□□□□ -1.2
LIG1-213ENST00000596672 PMS2P5A8MQ11 134 aa7.54□□□□□ -1.2
LIG1-213ENST00000596672 F6UB75 175 aa7.54□□□□□ -1.2
LIG1-213ENST00000596672 TAAR5O14804 337 aa7.54□□□□□ -1.2
LIG1-213ENST00000596672 METTL15P1P0C7V9 234 aa7.54□□□□□ -1.2
LIG1-213ENST00000596672 FXYD7P58549 80 aa7.54□□□□□ -1.2
LIG1-213ENST00000596672 TAS2R30P59541 319 aa7.54□□□□□ -1.2
LIG1-213ENST00000596672 CLINT1Q14677 625 aa7.54□□□□□ -1.2
LIG1-213ENST00000596672 RPL7L1Q6DKI1 246 aaKnown RBP7.54□□□□□ -1.2
LIG1-213ENST00000596672 SIGLEC15Q6ZMC9 328 aa7.54□□□□□ -1.2
LIG1-213ENST00000596672 TMEM217Q8N7C4 229 aa7.54□□□□□ -1.2
LIG1-213ENST00000596672 CIB3Q96Q77 187 aaPredicted RBP7.54□□□□□ -1.2
LIG1-213ENST00000596672 PBDC1Q9BVG4 233 aa7.54□□□□□ -1.2
LIG1-213ENST00000596672 XCL2Q9UBD3 114 aa7.54□□□□□ -1.2
LIG1-213ENST00000596672 STRAPQ9Y3F4 350 aaKnown RBP7.54□□□□□ -1.2
LIG1-213ENST00000596672 NMBP08949 121 aa7.53□□□□□ -1.2
LIG1-213ENST00000596672 PRB4P10163 310 aaPredicted RBP7.53□□□□□ -1.2
LIG1-213ENST00000596672 HLA-DMBP28068 263 aa7.53□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms